Strain Fitness in Pantoea sp. MT58 around IAI47_12475

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,628,576	-		IAI47_12470	0.17	-3.1
2,628,583	-		IAI47_12470	0.18	-2.2
2,628,654	+		IAI47_12470	0.28	-2.1
2,628,654	+		IAI47_12470	0.28	-1.0
2,628,655	-		IAI47_12470	0.29	-1.2
2,628,655	-		IAI47_12470	0.29	-0.0
2,628,655	-		IAI47_12470	0.29	-0.3
2,628,655	-		IAI47_12470	0.29	-0.1
2,628,684	+		IAI47_12470	0.33	+0.1
2,628,684	+		IAI47_12470	0.33	-1.5
2,628,684	+		IAI47_12470	0.33	-0.7
2,628,684	+		IAI47_12470	0.33	-2.4
2,628,685	-		IAI47_12470	0.33	-2.5
2,628,685	-		IAI47_12470	0.33	-0.5
2,628,685	-		IAI47_12470	0.33	-3.1
2,628,685	-		IAI47_12470	0.33	+0.2
2,628,685	-		IAI47_12470	0.33	-1.6
2,628,685	-		IAI47_12470	0.33	-0.6
2,628,685	-		IAI47_12470	0.33	-1.9
2,628,753	+		IAI47_12470	0.43	+0.2
2,628,753	+		IAI47_12470	0.43	-0.2
2,628,753	+		IAI47_12470	0.43	-0.1
2,628,753	+		IAI47_12470	0.43	-1.4
2,628,753	+		IAI47_12470	0.43	-2.6
2,628,753	+		IAI47_12470	0.43	+0.1
2,628,753	+		IAI47_12470	0.43	-0.7
2,628,754	-		IAI47_12470	0.44	-0.9
2,628,754	-		IAI47_12470	0.44	-1.1
2,628,754	-		IAI47_12470	0.44	-0.5
2,628,754	-		IAI47_12470	0.44	-0.8
2,628,754	-		IAI47_12470	0.44	+0.3
2,628,754	-		IAI47_12470	0.44	-2.6
2,628,754	-		IAI47_12470	0.44	-1.3
2,628,754	-		IAI47_12470	0.44	-0.5
2,628,755	+		IAI47_12470	0.44	+0.6
2,628,755	+		IAI47_12470	0.44	+0.1
2,628,755	+		IAI47_12470	0.44	-1.7
2,628,755	+		IAI47_12470	0.44	-1.9
2,628,755	+		IAI47_12470	0.44	-1.2
2,628,755	+		IAI47_12470	0.44	-1.5
2,628,755	+		IAI47_12470	0.44	-0.7
2,628,755	+		IAI47_12470	0.44	+0.6
2,628,755	+		IAI47_12470	0.44	-0.2
2,628,756	-		IAI47_12470	0.44	-1.4
2,628,756	-		IAI47_12470	0.44	+1.3
2,628,756	-		IAI47_12470	0.44	-1.9
2,628,756	-		IAI47_12470	0.44	-1.0
2,628,756	-		IAI47_12470	0.44	-0.2
2,628,816	+		IAI47_12470	0.53	-1.2
2,628,847	-		IAI47_12470	0.58	-2.0
2,628,847	-		IAI47_12470	0.58	+0.7
2,628,847	-		IAI47_12470	0.58	-2.0
2,628,852	+		IAI47_12470	0.58	-0.1
2,628,853	-		IAI47_12470	0.59	-0.6
2,628,873	+		IAI47_12470	0.62	-2.2
2,628,874	-		IAI47_12470	0.62	-0.9
2,628,879	+		IAI47_12470	0.63	+0.4
2,628,879	+		IAI47_12470	0.63	-2.9
2,628,879	+		IAI47_12470	0.63	-0.2
2,628,880	-		IAI47_12470	0.63	-0.2
2,628,880	-		IAI47_12470	0.63	-0.8
2,628,880	-		IAI47_12470	0.63	-1.2
2,628,880	-		IAI47_12470	0.63	-0.9
2,628,888	+		IAI47_12470	0.64	+0.2
2,628,888	+		IAI47_12470	0.64	-1.4
2,628,889	-		IAI47_12470	0.64	-2.0
2,628,911	+		IAI47_12470	0.67	-2.2
2,628,912	-		IAI47_12470	0.68	-2.0
2,628,991	-		IAI47_12470	0.80	-0.1
2,629,005	+		IAI47_12470	0.82	-2.8
2,629,005	+		IAI47_12470	0.82	-1.6
2,629,005	+		IAI47_12470	0.82	+0.3
2,629,005	+		IAI47_12470	0.82	-3.0
2,629,005	+		IAI47_12470	0.82	-0.3
2,629,006	-		IAI47_12470	0.82	+0.3
2,629,053	+		IAI47_12470	0.89	-3.4
2,629,053	+		IAI47_12470	0.89	-2.6
2,629,053	+		IAI47_12470	0.89	-1.0
2,629,053	+		IAI47_12470	0.89	-2.7
2,629,053	+		IAI47_12470	0.89	-1.0
2,629,053	+		IAI47_12470	0.89	+1.5
2,629,054	-		IAI47_12470	0.89	-3.4
2,629,054	-		IAI47_12470	0.89	-1.9
2,629,054	-		IAI47_12470	0.89	-2.6
2,629,084	-				-0.0
2,629,184	+				-1.3
2,629,185	-				-0.5
2,629,195	-				-1.7
2,629,218	+				+0.3
2,629,234	+				+0.5
2,629,235	-				+0.8
2,629,235	-				+0.5
2,629,269	+				-2.0
2,629,269	+				+0.7
2,629,269	+				+0.0
2,629,313	-				-0.4
2,629,313	-				+1.2
2,629,323	+				-1.0
2,629,336	+				+1.0
2,629,336	+				+1.1
2,629,336	+				-2.4
2,629,346	+				-1.5
2,629,346	+				+1.0
2,629,347	-				+0.3
2,629,347	-				+0.6
2,629,349	+				-0.5
2,629,349	+				+1.7
2,629,349	+				-0.7
2,629,350	-				-0.6
2,629,350	-				-2.2
2,629,350	-				-0.7
2,629,377	+				+1.0
2,629,377	+				+0.4
2,629,377	+				+0.6
2,629,378	-				-0.1
2,629,378	-				+1.3
2,629,378	-				+0.0
2,629,378	-				+1.3
2,629,378	-				-0.8
2,629,378	-				+0.3
2,629,378	-				+1.0
2,629,380	+				+0.2
2,629,380	+				-0.6
2,629,405	+				+1.0
2,629,406	-				-0.7
2,629,406	-				-0.3
2,629,422	+				+2.2
2,629,423	-				-0.7
2,629,480	+				+1.4
2,629,480	+				-2.0
2,629,480	+				-0.6
2,629,480	+				+1.7
2,629,480	+				-0.2
2,629,480	+				-0.3
2,629,480	+				-0.8
2,629,480	+				-0.0
2,629,480	+				-0.8
2,629,480	+				+0.4
2,629,481	-				+2.8
2,629,481	-				+0.9
2,629,481	-				+0.6
2,629,494	+				-1.0
2,629,495	-				-0.4
2,629,495	-				+1.3
2,629,495	-				-1.2
2,629,497	-				-0.6
2,629,497	-				-0.9
2,629,497	-				-0.7
2,629,497	-				-0.5
2,629,497	-				+0.7
2,629,497	-				+0.7
2,629,497	-				-0.1
2,629,497	-				+0.3
2,629,497	-				-1.1
2,629,552	+				-0.7
2,629,552	+				-0.5
2,629,552	+				-2.6
2,629,553	-				+1.4
2,629,553	-				+0.4
2,629,553	-				+0.8
2,629,553	-				-0.1
2,629,553	-				+2.7
2,629,553	-				-2.1
2,629,652	+		IAI47_12475	0.42	-1.0
2,629,652	+		IAI47_12475	0.42	+0.7
2,629,652	+		IAI47_12475	0.42	+0.8
2,629,652	+		IAI47_12475	0.42	-3.4
2,629,653	-		IAI47_12475	0.43	+1.0
2,629,653	-		IAI47_12475	0.43	-1.6
2,629,653	-		IAI47_12475	0.43	-1.3
2,629,653	-				-0.3
2,629,653	-		IAI47_12475	0.43	+1.4
2,629,698	+		IAI47_12475	0.63	-0.5
2,629,698	+		IAI47_12475	0.63	+0.3
2,629,698	+		IAI47_12475	0.63	-0.8
2,629,699	-		IAI47_12475	0.63	+0.8
2,629,699	-		IAI47_12475	0.63	-0.7
2,629,699	-		IAI47_12475	0.63	+0.1
2,629,699	-		IAI47_12475	0.63	+0.1
2,629,699	-		IAI47_12475	0.63	+0.4
2,629,702	+		IAI47_12475	0.64	-2.0
2,629,702	+		IAI47_12475	0.64	-0.7
2,629,702	+		IAI47_12475	0.64	-0.8
2,629,702	+		IAI47_12475	0.64	-0.1
2,629,703	-		IAI47_12475	0.65	-0.3
2,629,703	-		IAI47_12475	0.65	+0.2
2,629,703	-		IAI47_12475	0.65	-0.7
2,629,703	-		IAI47_12475	0.65	+1.6
2,629,703	-		IAI47_12475	0.65	-0.6
2,629,751	+		IAI47_12475	0.86	-1.6
2,629,752	-		IAI47_12475	0.87	-0.6
2,629,761	-				-1.0
2,629,761	-				+1.9
2,629,761	-				+0.7
2,629,808	+				-0.3
2,629,808	+				+0.4
2,629,808	+				-0.0
2,629,809	-				-0.7
2,629,809	-				+2.5
2,629,809	-				-2.2
2,629,809	-				+0.7
2,629,809	-				+0.5
2,629,809	-				+0.3
2,629,810	+				-0.3
2,629,810	+				+0.6
2,629,810	+				+0.1
2,629,810	+				+0.0
2,629,810	+				+1.3
2,629,810	+				+1.0
2,629,810	+				+0.6
2,629,810	+				+1.1
2,629,810	+				-2.3
2,629,810	+				+0.7
2,629,811	-				+1.5
2,629,811	-				+0.3
2,629,811	-				-0.1
2,629,811	-				+0.3
2,629,811	-				+0.5
2,629,811	-				-0.6
2,629,811	-				+0.9
2,629,811	-				-1.8
2,629,811	-				+0.9
2,629,811	-				-2.0
2,629,811	-				+0.1
2,629,811	-				+0.4
2,629,815	+				+3.0
2,629,816	-				-2.0
2,629,859	+				-1.7
2,629,860	-				-1.0
2,629,893	+		IAI47_12480	0.13	-0.3
2,629,893	+		IAI47_12480	0.13	+0.4
2,629,894	-		IAI47_12480	0.13	-1.0
2,629,894	-		IAI47_12480	0.13	-1.0
2,629,894	-		IAI47_12480	0.13	+0.5
2,629,946	-		IAI47_12480	0.22	-0.0
2,629,946	-		IAI47_12480	0.22	-0.1
2,629,960	+		IAI47_12480	0.24	+0.4
2,629,960	+		IAI47_12480	0.24	+1.3
2,629,960	+		IAI47_12480	0.24	-0.2
2,629,960	+		IAI47_12480	0.24	-0.6
2,629,960	+		IAI47_12480	0.24	+0.5
2,629,960	+		IAI47_12480	0.24	+0.3
2,629,960	+		IAI47_12480	0.24	-1.1
2,629,961	-		IAI47_12480	0.24	+0.1
2,629,961	-		IAI47_12480	0.24	-1.3
2,629,961	-		IAI47_12480	0.24	+0.8
2,629,961	-		IAI47_12480	0.24	+0.6
2,629,973	-		IAI47_12480	0.26	-1.5
2,629,983	+		IAI47_12480	0.28	-0.3
2,629,983	+		IAI47_12480	0.28	+0.1
2,629,983	+		IAI47_12480	0.28	+0.2
2,629,984	-		IAI47_12480	0.28	+0.3
2,629,984	-		IAI47_12480	0.28	-0.7
2,629,984	-		IAI47_12480	0.28	-0.5
2,629,984	-		IAI47_12480	0.28	-1.2
2,629,984	-		IAI47_12480	0.28	-0.6
2,629,984	-		IAI47_12480	0.28	-0.7
2,629,984	-		IAI47_12480	0.28	+1.1
2,630,035	+		IAI47_12480	0.36	+1.2
2,630,035	+		IAI47_12480	0.36	+1.4
2,630,035	+		IAI47_12480	0.36	-1.1
2,630,035	+		IAI47_12480	0.36	+0.0
2,630,035	+		IAI47_12480	0.36	+2.0
2,630,035	+		IAI47_12480	0.36	+0.5
2,630,035	+		IAI47_12480	0.36	-1.5
2,630,035	+		IAI47_12480	0.36	+0.9
2,630,036	-		IAI47_12480	0.36	+1.7
2,630,036	-		IAI47_12480	0.36	-0.1
2,630,036	-		IAI47_12480	0.36	-1.1
2,630,036	-		IAI47_12480	0.36	+0.6
2,630,036	-		IAI47_12480	0.36	-0.8
2,630,036	-		IAI47_12480	0.36	+0.7
2,630,036	-		IAI47_12480	0.36	-0.7
2,630,036	-		IAI47_12480	0.36	+1.4
2,630,043	+		IAI47_12480	0.37	+0.7
2,630,043	+		IAI47_12480	0.37	-0.8
2,630,043	+		IAI47_12480	0.37	-2.4
2,630,043	+		IAI47_12480	0.37	+0.7
2,630,043	+		IAI47_12480	0.37	-0.7
2,630,043	+		IAI47_12480	0.37	-0.2
2,630,043	+		IAI47_12480	0.37	+0.5
2,630,044	-		IAI47_12480	0.38	+1.1
2,630,044	-		IAI47_12480	0.38	+1.0
2,630,044	-		IAI47_12480	0.38	-0.1
2,630,044	-		IAI47_12480	0.38	-0.1
2,630,044	-		IAI47_12480	0.38	+1.3
2,630,044	-		IAI47_12480	0.38	-0.4
2,630,044	-		IAI47_12480	0.38	-1.7
2,630,044	-		IAI47_12480	0.38	+1.2
2,630,280	+		IAI47_12480	0.76	+0.2
2,630,280	+		IAI47_12480	0.76	+0.6
2,630,281	-		IAI47_12480	0.76	+0.1
2,630,289	+		IAI47_12480	0.78	-0.3
2,630,290	-		IAI47_12480	0.78	-0.6
2,630,290	-		IAI47_12480	0.78	+1.8
2,630,290	-		IAI47_12480	0.78	+0.1
2,630,290	-		IAI47_12480	0.78	-0.4
2,630,290	-		IAI47_12480	0.78	+1.5
2,630,290	-		IAI47_12480	0.78	+1.1
2,630,355	+		IAI47_12480	0.88	+0.1
2,630,356	-		IAI47_12480	0.89	-1.7
2,630,361	+		IAI47_12480	0.89	+0.3
2,630,362	-		IAI47_12480	0.90	-0.3
2,630,395	+				-0.3
2,630,395	+				+0.3
2,630,395	+				-1.9
2,630,396	+				+0.2
2,630,396	-				+0.9
2,630,396	-				+0.3
2,630,396	-				-0.9
2,630,402	+				-0.5
2,630,402	+				+1.0
2,630,403	-				+0.3
2,630,403	-				+0.0
2,630,403	-				-0.6
2,630,403	-				+1.5
2,630,418	-				+1.6
2,630,418	-				+0.7
2,630,451	+				+1.4
2,630,496	+				+0.8
2,630,511	+				+1.4
2,630,512	-				-0.8
2,630,512	-				+1.5
2,630,512	-				+0.5
2,630,512	-				-0.6
2,630,532	-				-0.7
2,630,543	+				+0.2
2,630,543	+				+1.4
2,630,573	+				+2.5
2,630,573	+				-0.1
2,630,574	-				-1.2
2,630,574	-				-0.8
2,630,643	+		IAI47_12485	0.13	-2.4
2,630,643	+		IAI47_12485	0.13	+0.8
2,630,644	-		IAI47_12485	0.13	-0.7
2,630,644	-		IAI47_12485	0.13	+0.1
2,630,644	-		IAI47_12485	0.13	-0.3
2,630,644	-		IAI47_12485	0.13	+1.0
2,630,659	+		IAI47_12485	0.15	+0.4
2,630,664	+		IAI47_12485	0.16	+2.3
2,630,664	+		IAI47_12485	0.16	-0.6
2,630,665	-		IAI47_12485	0.16	+1.2
2,630,665	-		IAI47_12485	0.16	+0.9
2,630,730	+		IAI47_12485	0.25	-0.4
2,630,731	-		IAI47_12485	0.25	-0.0
2,630,766	+		IAI47_12485	0.30	-0.1