Strain Fitness in Pantoea sp. MT58 around IAI47_11760

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,492,793	+		IAI47_11755	0.54	+0.5
2,492,874	+		IAI47_11755	0.58	+1.1
2,492,875	-		IAI47_11755	0.59	+0.8
2,492,962	+		IAI47_11755	0.64	+1.4
2,492,973	+		IAI47_11755	0.64	-0.1
2,492,973	+		IAI47_11755	0.64	+1.6
2,492,973	+		IAI47_11755	0.64	+0.4
2,492,973	+		IAI47_11755	0.64	+0.8
2,492,974	-		IAI47_11755	0.64	+1.2
2,492,974	-		IAI47_11755	0.64	+0.7
2,492,974	-		IAI47_11755	0.64	+3.0
2,493,040	+		IAI47_11755	0.68	+0.8
2,493,077	-		IAI47_11755	0.71	-0.6
2,493,136	+		IAI47_11755	0.74	+1.4
2,493,137	-		IAI47_11755	0.74	+1.3
2,493,137	-		IAI47_11755	0.74	+0.8
2,493,137	-		IAI47_11755	0.74	+0.1
2,493,147	-		IAI47_11755	0.75	+0.2
2,493,147	-		IAI47_11755	0.75	+0.3
2,493,219	-		IAI47_11755	0.79	+2.7
2,493,219	-		IAI47_11755	0.79	+1.8
2,493,230	+		IAI47_11755	0.80	+1.9
2,493,230	+		IAI47_11755	0.80	-0.0
2,493,230	+		IAI47_11755	0.80	+1.0
2,493,230	+		IAI47_11755	0.80	-1.5
2,493,231	-		IAI47_11755	0.80	+1.4
2,493,231	-		IAI47_11755	0.80	+1.2
2,493,231	-		IAI47_11755	0.80	+1.2
2,493,231	-		IAI47_11755	0.80	+1.0
2,493,308	-		IAI47_11755	0.84	+1.4
2,493,308	-		IAI47_11755	0.84	+0.1
2,493,308	-		IAI47_11755	0.84	-2.1
2,493,308	-		IAI47_11755	0.84	+0.9
2,493,309	+		IAI47_11755	0.84	+1.4
2,493,309	+		IAI47_11755	0.84	+1.3
2,493,309	+		IAI47_11755	0.84	+0.2
2,493,309	+		IAI47_11755	0.84	+1.2
2,493,310	-		IAI47_11755	0.84	-1.8
2,493,310	-		IAI47_11755	0.84	+0.1
2,493,310	-		IAI47_11755	0.84	+1.6
2,493,310	-		IAI47_11755	0.84	+2.4
2,493,341	+		IAI47_11755	0.86	+0.7
2,493,342	-		IAI47_11755	0.86	+2.3
2,493,342	-		IAI47_11755	0.86	+0.4
2,493,342	-		IAI47_11755	0.86	+1.2
2,493,370	+		IAI47_11755	0.88	+1.5
2,493,370	+		IAI47_11755	0.88	+0.4
2,493,370	+		IAI47_11755	0.88	-0.1
2,493,371	-		IAI47_11755	0.88	+0.8
2,493,371	-		IAI47_11755	0.88	-0.1
2,493,371	-		IAI47_11755	0.88	+1.3
2,493,384	+		IAI47_11755	0.89	+1.4
2,493,384	+		IAI47_11755	0.89	+0.6
2,493,384	+		IAI47_11755	0.89	+0.3
2,493,384	+		IAI47_11755	0.89	+0.2
2,493,384	+		IAI47_11755	0.89	+0.4
2,493,384	+		IAI47_11755	0.89	+1.2
2,493,385	-		IAI47_11755	0.89	+0.2
2,493,385	-		IAI47_11755	0.89	+0.6
2,493,385	-		IAI47_11755	0.89	+1.3
2,493,385	-		IAI47_11755	0.89	+0.5
2,493,400	+		IAI47_11755	0.90	-0.6
2,493,400	+		IAI47_11755	0.90	+0.8
2,493,400	+		IAI47_11755	0.90	-0.6
2,493,400	+		IAI47_11755	0.90	+0.5
2,493,400	+		IAI47_11755	0.90	-0.9
2,493,400	+		IAI47_11755	0.90	+1.4
2,493,401	-		IAI47_11755	0.90	+1.2
2,493,401	-		IAI47_11755	0.90	+1.0
2,493,501	+				+0.7
2,493,501	+				+0.7
2,493,501	+				+1.9
2,493,505	+				+0.7
2,493,505	+				+0.9
2,493,505	+				+1.5
2,493,505	+				+1.3
2,493,505	+				+0.9
2,493,505	+				+1.7
2,493,505	+				+1.4
2,493,506	-				+1.2
2,493,506	-				+1.2
2,493,506	-				+1.2
2,493,506	-				+0.4
2,493,506	-				+2.2
2,493,519	+				+0.7
2,493,520	-				+2.2
2,493,571	+				+1.4
2,493,571	+				+1.9
2,493,572	-				+0.6
2,493,586	-				+0.2
2,493,607	-				+1.0
2,493,607	-				+0.4
2,493,651	+				-0.3
2,493,651	+				-0.3
2,493,652	-				+0.8
2,493,652	-				+0.0
2,493,652	-				+1.9
2,493,652	-				+0.4
2,493,652	-				+1.4
2,493,652	-				-0.8
2,493,652	-				+2.7
2,493,652	-				-0.4
2,493,652	-				+0.4
2,493,683	+				+0.3
2,494,515	+		IAI47_11760	0.36	-1.7
2,495,176	-		IAI47_11760	0.67	-0.2
2,495,545	-		IAI47_11760	0.85	-1.8
2,495,583	+		IAI47_11760	0.87	-0.2
2,495,865	+				-1.0
2,495,866	-				+1.6
2,495,874	-				+0.1
2,495,927	+				+1.3
2,495,934	-				+0.2
2,495,942	-				+0.1
2,495,942	-				-0.2
2,495,952	-				+1.1
2,496,007	-		IAI47_11765	0.30	+2.0
2,496,007	-		IAI47_11765	0.30	+1.2
2,496,007	-		IAI47_11765	0.30	+2.2
2,496,039	+		IAI47_11765	0.43	-1.0
2,496,039	+		IAI47_11765	0.43	-0.6
2,496,039	+		IAI47_11765	0.43	+0.9
2,496,039	+		IAI47_11765	0.43	+0.3
2,496,040	-		IAI47_11765	0.43	+0.6
2,496,040	-		IAI47_11765	0.43	+1.2
2,496,040	-		IAI47_11765	0.43	+1.1
2,496,040	-		IAI47_11765	0.43	+0.5
2,496,058	+		IAI47_11765	0.51	-1.2
2,496,058	+		IAI47_11765	0.51	-1.5
2,496,059	-		IAI47_11765	0.51	+0.4
2,496,070	-		IAI47_11765	0.55	+0.8
2,496,072	+		IAI47_11765	0.56	-0.8
2,496,073	-		IAI47_11765	0.57	-2.0
2,496,073	-		IAI47_11765	0.57	+0.3
2,496,079	+		IAI47_11765	0.59	-2.6
2,496,080	-		IAI47_11765	0.59	-0.4
2,496,111	+		IAI47_11765	0.72	-0.9
2,496,111	+		IAI47_11765	0.72	-0.7
2,496,112	-		IAI47_11765	0.72	+1.1
2,496,112	-		IAI47_11765	0.72	+0.9
2,496,121	-		IAI47_11765	0.76	-0.1
2,496,121	-		IAI47_11765	0.76	+1.3
2,496,139	-		IAI47_11765	0.83	+0.1
2,496,171	+				-1.0
2,496,171	+				+1.1
2,496,172	-				+0.2
2,496,172	-				-1.3
2,496,174	+				+0.9
2,496,175	-				-0.3
2,496,175	-				-2.9
2,496,199	+				-1.3
2,496,200	-				+0.1
2,496,245	+				-0.1
2,496,249	+				-0.0
2,496,249	+				+0.0
2,496,249	+				-0.8
2,496,249	+				-1.5
2,496,250	-				+1.4
2,496,252	-				-0.7
2,496,288	+				-0.7
2,496,288	+				+1.2
2,496,289	-				+2.8
2,496,289	-				-0.3
2,496,289	-				-0.7
2,496,289	-				+0.0
2,496,292	-				+1.3
2,496,360	+				+0.6
2,496,360	+				-1.3
2,496,360	+				-0.7
2,496,361	-				+0.2
2,496,364	+				+0.7
2,496,364	+				+1.1
2,496,364	+				-0.5
2,496,364	+				-2.0
2,496,364	+				+1.0
2,496,364	+				+1.9
2,496,365	-				-0.3
2,496,365	-				-1.9
2,496,365	-				+0.3
2,496,370	-				+2.5
2,496,414	+				-0.1
2,496,414	+				+0.5
2,496,414	+				+1.2
2,496,415	-				+0.2
2,496,415	-				-1.2
2,496,415	-				-1.6
2,496,415	-				-1.0
2,496,415	-				-1.3
2,496,415	-				-1.2
2,496,415	-				-1.7
2,496,419	-				-0.1
2,496,419	-				+0.5
2,496,481	+		IAI47_11770	0.12	+0.7
2,496,481	+		IAI47_11770	0.12	+1.1
2,496,563	+		IAI47_11770	0.24	+1.4
2,496,564	-		IAI47_11770	0.24	+0.1
2,496,564	-		IAI47_11770	0.24	+0.3
2,496,564	-		IAI47_11770	0.24	-0.0
2,496,566	+		IAI47_11770	0.24	-2.2
2,496,567	-		IAI47_11770	0.24	+0.2
2,496,582	+		IAI47_11770	0.26	-1.2
2,496,590	-		IAI47_11770	0.27	-1.3
2,496,608	+		IAI47_11770	0.30	-0.7
2,496,609	-		IAI47_11770	0.30	-2.4
2,496,804	-		IAI47_11770	0.56	+0.4
2,496,820	+		IAI47_11770	0.59	+0.5
2,496,820	+		IAI47_11770	0.59	-0.7