Strain Fitness in Pantoea sp. MT58 around IAI47_10620

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,243,245	+				+1.5
2,243,245	+				-1.4
2,243,246	-				+1.8
2,243,295	+				-1.5
2,243,372	+				-0.8
2,243,372	+				+2.3
2,243,415	+		IAI47_10615	0.12	-1.1
2,243,415	+		IAI47_10615	0.12	-0.1
2,243,415	+		IAI47_10615	0.12	+0.2
2,243,415	+		IAI47_10615	0.12	+1.2
2,243,415	+		IAI47_10615	0.12	+3.6
2,243,416	-		IAI47_10615	0.12	+1.8
2,243,416	-		IAI47_10615	0.12	+1.3
2,243,532	+		IAI47_10615	0.26	+2.1
2,243,532	+		IAI47_10615	0.26	+0.3
2,243,532	+		IAI47_10615	0.26	-1.7
2,243,532	+		IAI47_10615	0.26	-0.9
2,243,532	+		IAI47_10615	0.26	-0.7
2,243,533	-		IAI47_10615	0.26	+0.4
2,243,535	-		IAI47_10615	0.26	+1.5
2,243,636	+		IAI47_10615	0.38	-1.2
2,243,636	+		IAI47_10615	0.38	-1.0
2,243,637	-		IAI47_10615	0.38	-0.8
2,243,637	-		IAI47_10615	0.38	+0.6
2,243,637	-		IAI47_10615	0.38	+0.8
2,243,678	+		IAI47_10615	0.43	+0.2
2,243,678	+		IAI47_10615	0.43	+0.9
2,243,679	-		IAI47_10615	0.43	-1.6
2,243,679	-		IAI47_10615	0.43	-0.4
2,243,679	-		IAI47_10615	0.43	+0.8
2,243,679	-		IAI47_10615	0.43	-1.1
2,243,693	+		IAI47_10615	0.44	+0.2
2,243,693	+		IAI47_10615	0.44	-0.5
2,243,694	-		IAI47_10615	0.44	+1.2
2,243,703	+		IAI47_10615	0.45	+1.5
2,243,775	+		IAI47_10615	0.54	-0.8
2,243,776	-		IAI47_10615	0.54	+0.3
2,243,787	+		IAI47_10615	0.55	-0.2
2,243,787	+		IAI47_10615	0.55	+0.0
2,243,788	-		IAI47_10615	0.55	-1.5
2,243,788	-		IAI47_10615	0.55	+0.1
2,243,788	-		IAI47_10615	0.55	-0.8
2,243,796	-		IAI47_10615	0.56	-1.4
2,243,796	-		IAI47_10615	0.56	-1.8
2,243,796	-		IAI47_10615	0.56	+0.1
2,243,886	+		IAI47_10615	0.67	-0.1
2,243,909	+		IAI47_10615	0.69	+0.4
2,243,909	+		IAI47_10615	0.69	+0.8
2,243,910	-		IAI47_10615	0.69	+1.3
2,243,912	+		IAI47_10615	0.70	+0.3
2,243,913	-		IAI47_10615	0.70	-0.2
2,243,954	+		IAI47_10615	0.75	-1.4
2,243,963	+		IAI47_10615	0.76	+0.8
2,243,963	+		IAI47_10615	0.76	-1.4
2,243,964	-		IAI47_10615	0.76	+0.3
2,243,964	-		IAI47_10615	0.76	-1.2
2,243,964	-		IAI47_10615	0.76	+0.7
2,243,984	+		IAI47_10615	0.78	-0.2
2,243,985	-		IAI47_10615	0.78	-1.1
2,243,998	+		IAI47_10615	0.80	-1.9
2,244,093	+				-0.1
2,244,093	+				+0.4
2,244,094	-				+0.2
2,244,094	-				-0.1
2,244,094	-				+1.1
2,244,094	-				+0.2
2,244,094	-				-0.9
2,244,100	+				-0.1
2,244,123	+				-1.2
2,244,165	-				-2.1
2,244,165	-				-0.6
2,244,167	+				-1.8
2,244,167	+				-0.2
2,244,168	-				+0.8
2,244,168	-				+0.2
2,244,171	+				-1.1
2,244,171	+				+0.6
2,244,172	-				-1.4
2,244,214	+				+2.2
2,244,289	-		IAI47_10620	0.12	+1.2
2,244,333	+		IAI47_10620	0.17	+2.0
2,244,333	+		IAI47_10620	0.17	+0.1
2,244,341	+		IAI47_10620	0.17	-0.8
2,244,341	+		IAI47_10620	0.17	+0.7
2,244,341	+		IAI47_10620	0.17	+1.6
2,244,437	+		IAI47_10620	0.27	+0.6
2,244,438	-		IAI47_10620	0.27	-0.8
2,244,507	+		IAI47_10620	0.34	-0.2
2,244,507	+		IAI47_10620	0.34	-1.1
2,244,508	-		IAI47_10620	0.34	-1.1
2,244,541	-		IAI47_10620	0.37	+1.1
2,244,693	+		IAI47_10620	0.52	-0.9
2,244,693	+				-1.1
2,244,693	+		IAI47_10620	0.52	-0.4
2,244,693	+		IAI47_10620	0.52	-1.4
2,244,693	+		IAI47_10620	0.52	-0.1
2,244,694	-		IAI47_10620	0.52	-0.6
2,244,694	-		IAI47_10620	0.52	+0.0
2,244,694	-		IAI47_10620	0.52	+1.1
2,244,726	+		IAI47_10620	0.55	+0.4
2,244,726	+		IAI47_10620	0.55	+1.3
2,244,727	-		IAI47_10620	0.55	-0.8
2,244,727	-		IAI47_10620	0.55	+0.5
2,244,727	-		IAI47_10620	0.55	+0.3
2,244,762	-		IAI47_10620	0.59	-0.0
2,244,818	+		IAI47_10620	0.64	+0.4
2,244,819	+		IAI47_10620	0.65	+0.6
2,244,819	+		IAI47_10620	0.65	+0.3
2,244,819	+		IAI47_10620	0.65	+0.7
2,244,819	+		IAI47_10620	0.65	-3.2
2,244,819	+		IAI47_10620	0.65	-0.6
2,244,819	+		IAI47_10620	0.65	+0.0
2,244,819	+		IAI47_10620	0.65	-2.3
2,244,819	+		IAI47_10620	0.65	+0.1
2,244,819	+		IAI47_10620	0.65	+0.9
2,244,819	+		IAI47_10620	0.65	+0.3
2,244,819	+		IAI47_10620	0.65	+1.6
2,244,819	+		IAI47_10620	0.65	-2.4
2,244,819	+		IAI47_10620	0.65	-0.5
2,244,820	-		IAI47_10620	0.65	-0.9
2,244,820	-		IAI47_10620	0.65	-1.2
2,244,820	-		IAI47_10620	0.65	-0.3
2,244,820	-		IAI47_10620	0.65	-0.8
2,244,820	-		IAI47_10620	0.65	-0.1
2,244,820	-		IAI47_10620	0.65	-0.8
2,244,820	-		IAI47_10620	0.65	-0.2
2,244,820	-		IAI47_10620	0.65	-2.3
2,244,820	-		IAI47_10620	0.65	+0.1
2,244,820	-		IAI47_10620	0.65	-0.3
2,244,820	-		IAI47_10620	0.65	+0.0
2,244,820	-		IAI47_10620	0.65	-1.0
2,244,820	-		IAI47_10620	0.65	+0.7
2,244,820	-		IAI47_10620	0.65	-0.2
2,244,820	-		IAI47_10620	0.65	+0.2
2,244,820	-		IAI47_10620	0.65	-0.7
2,244,820	-		IAI47_10620	0.65	+0.3
2,244,820	-		IAI47_10620	0.65	-1.5
2,244,820	-		IAI47_10620	0.65	-2.5
2,244,821	+		IAI47_10620	0.65	-1.5
2,244,821	+		IAI47_10620	0.65	+0.1
2,244,821	+		IAI47_10620	0.65	-0.3
2,244,821	+		IAI47_10620	0.65	+1.2
2,244,822	-		IAI47_10620	0.65	-1.5
2,244,822	-		IAI47_10620	0.65	-0.5
2,244,822	-		IAI47_10620	0.65	-0.8
2,244,822	-		IAI47_10620	0.65	-0.1
2,244,822	-		IAI47_10620	0.65	+0.6
2,244,822	-		IAI47_10620	0.65	+0.5
2,244,893	+		IAI47_10620	0.72	-0.8
2,244,893	+		IAI47_10620	0.72	+0.7
2,244,893	+		IAI47_10620	0.72	+0.0
2,244,894	-		IAI47_10620	0.72	+1.2
2,244,894	-		IAI47_10620	0.72	+1.9
2,244,942	+		IAI47_10620	0.77	-0.1
2,244,942	+		IAI47_10620	0.77	+0.7
2,244,943	-		IAI47_10620	0.77	-0.3
2,244,943	-		IAI47_10620	0.77	-0.4
2,244,943	-		IAI47_10620	0.77	+0.7
2,244,943	-		IAI47_10620	0.77	+0.2
2,244,944	+		IAI47_10620	0.77	+1.0
2,244,944	+		IAI47_10620	0.77	-0.4
2,244,944	+		IAI47_10620	0.77	-1.3
2,244,945	-		IAI47_10620	0.77	-0.2
2,244,999	+		IAI47_10620	0.82	-1.4
2,244,999	+		IAI47_10620	0.82	+2.0
2,244,999	+		IAI47_10620	0.82	+0.8
2,245,023	-		IAI47_10620	0.85	+0.9
2,245,028	+		IAI47_10620	0.85	-0.7
2,245,029	+		IAI47_10620	0.85	+0.0
2,245,029	+		IAI47_10620	0.85	-1.3
2,245,029	+		IAI47_10620	0.85	-0.1
2,245,030	-		IAI47_10620	0.85	-0.0
2,245,030	-		IAI47_10620	0.85	+0.4
2,245,030	-		IAI47_10620	0.85	-1.5
2,245,032	+		IAI47_10620	0.86	+1.8
2,245,038	+		IAI47_10620	0.86	-0.8
2,245,039	-		IAI47_10620	0.86	+0.4
2,245,041	+		IAI47_10620	0.87	-0.8
2,245,041	+		IAI47_10620	0.87	-0.5
2,245,041	+		IAI47_10620	0.87	+0.0
2,245,042	-		IAI47_10620	0.87	+0.1
2,245,047	+		IAI47_10620	0.87	-0.2
2,245,048	-		IAI47_10620	0.87	-1.4
2,245,151	+				+0.7
2,245,151	+				+2.3
2,245,152	-				-0.4
2,245,152	-				+2.8
2,245,152	-				-1.0
2,245,152	-				-0.6
2,245,152	-				+1.2
2,245,152	-				-0.4
2,245,155	+				+0.5
2,245,155	+				+0.6
2,245,155	+				-0.7
2,245,155	+				+0.7
2,245,155	+				-0.4
2,245,155	+				+1.0
2,245,155	+				-1.7
2,245,155	+				-0.9
2,245,155	+				+0.7
2,245,155	+				+0.2
2,245,155	+				-1.7
2,245,155	+				-1.1
2,245,155	+				-0.2
2,245,155	+				+0.3
2,245,155	+				-2.1
2,245,155	+				-1.0
2,245,155	+				-1.6
2,245,155	+				-1.2
2,245,156	-				-0.2
2,245,156	-				-0.2
2,245,156	-				+1.2
2,245,156	-				+1.8
2,245,156	-				-0.4
2,245,156	-				+1.3
2,245,156	-				-0.9
2,245,156	-				-0.4
2,245,156	-				+0.8
2,245,156	-				+1.4
2,245,168	+				+0.4
2,245,191	+				-1.2
2,245,191	+				+0.0
2,245,191	+				+0.5
2,245,191	+				+0.4
2,245,191	+				+0.8
2,245,191	+				+0.8
2,245,191	+				-0.4
2,245,191	+				-0.3
2,245,192	-				-1.7
2,245,192	-				+1.3
2,245,192	-				+0.9
2,245,192	-				+1.3
2,245,197	+				-0.1
2,245,198	-				-1.9
2,245,198	-				+0.2
2,245,208	+				-1.4
2,245,208	+				+0.8
2,245,208	+				+1.3
2,245,208	+				-1.2
2,245,209	-				+0.2
2,245,278	+				+1.3
2,245,278	+				-0.4
2,245,279	-				-0.3
2,245,348	+		IAI47_10625	0.19	-1.7
2,245,375	+		IAI47_10625	0.26	+0.8
2,245,375	+		IAI47_10625	0.26	+1.1
2,245,377	+		IAI47_10625	0.27	-0.4
2,245,377	+		IAI47_10625	0.27	+1.3
2,245,377	+		IAI47_10625	0.27	-0.5
2,245,378	-		IAI47_10625	0.27	-0.2
2,245,431	+		IAI47_10625	0.42	+0.6
2,245,480	+		IAI47_10625	0.55	-1.5
2,245,480	+		IAI47_10625	0.55	-0.1
2,245,480	+		IAI47_10625	0.55	+0.1
2,245,480	+		IAI47_10625	0.55	+0.5
2,245,481	-		IAI47_10625	0.55	+0.7
2,245,481	-		IAI47_10625	0.55	-1.1
2,245,481	-		IAI47_10625	0.55	+1.0
2,245,501	+		IAI47_10625	0.61	+1.6
2,245,506	+		IAI47_10625	0.62	+0.1
2,245,506	+		IAI47_10625	0.62	+2.0
2,245,506	+		IAI47_10625	0.62	+0.9
2,245,506	+		IAI47_10625	0.62	-1.2
2,245,506	+		IAI47_10625	0.62	+1.8
2,245,506	+		IAI47_10625	0.62	-2.5
2,245,507	-		IAI47_10625	0.62	+0.9
2,245,507	-		IAI47_10625	0.62	+0.5
2,245,507	-		IAI47_10625	0.62	-0.9
2,245,507	-		IAI47_10625	0.62	-1.1
2,245,512	+		IAI47_10625	0.64	-0.4
2,245,513	-		IAI47_10625	0.64	+0.0
2,245,513	-		IAI47_10625	0.64	-0.5
2,245,513	-		IAI47_10625	0.64	-1.0
2,245,513	-		IAI47_10625	0.64	+2.0
2,245,513	-		IAI47_10625	0.64	+0.0
2,245,534	+		IAI47_10625	0.70	+1.1
2,245,534	+		IAI47_10625	0.70	-2.1
2,245,642	+				+0.8
2,245,712	+				+0.1
2,245,712	+				-2.2
2,245,712	+				+0.0
2,245,713	-				+1.9
2,245,713	-				+1.6
2,245,713	-				+0.9
2,245,713	-				-1.5
2,245,713	-				-1.8
2,245,713	-				+2.3
2,245,713	-				-1.8
2,245,758	-				+0.3
2,245,764	-				-1.0
2,245,764	-				+0.4
2,245,764	-				-0.4
2,245,766	+				+0.3
2,245,766	+				+0.5
2,245,766	+				+0.1
2,245,766	+				+0.5
2,245,766	+				+0.4
2,245,766	+				-1.9
2,245,766	+				-0.8
2,245,766	+				-1.2
2,245,767	-				-1.9
2,245,767	-				-0.7
2,245,767	-				+1.1
2,245,767	-				-0.5
2,245,767	-				-1.5
2,245,767	-				+2.3
2,245,767	-				+0.2
2,245,767	-				+1.2
2,245,813	-		IAI47_10630	0.15	+1.5
2,245,821	+		IAI47_10630	0.16	-0.5
2,245,821	+		IAI47_10630	0.16	+0.2
2,245,821	+		IAI47_10630	0.16	-1.6
2,245,822	-		IAI47_10630	0.17	-0.1
2,245,860	+		IAI47_10630	0.22	-1.1
2,245,860	+		IAI47_10630	0.22	-0.5
2,245,860	+		IAI47_10630	0.22	-1.0
2,245,861	-		IAI47_10630	0.22	+1.9
2,245,861	-		IAI47_10630	0.22	+1.9
2,245,861	-		IAI47_10630	0.22	-0.1
2,245,880	+		IAI47_10630	0.25	+0.7
2,245,880	+		IAI47_10630	0.25	+0.2
2,245,880	+		IAI47_10630	0.25	-1.4
2,245,880	+		IAI47_10630	0.25	+2.3
2,245,881	-		IAI47_10630	0.25	-0.4
2,245,922	+		IAI47_10630	0.31	+1.8
2,245,947	+		IAI47_10630	0.35	-0.4
2,245,947	+		IAI47_10630	0.35	+0.2
2,245,948	-		IAI47_10630	0.35	+0.3
2,245,948	-		IAI47_10630	0.35	-1.4
2,245,949	+		IAI47_10630	0.35	+0.4
2,245,949	+		IAI47_10630	0.35	+1.2
2,245,949	+		IAI47_10630	0.35	+0.5
2,245,949	+		IAI47_10630	0.35	+0.4
2,245,949	+		IAI47_10630	0.35	+1.7
2,245,949	+		IAI47_10630	0.35	-0.0
2,245,949	+		IAI47_10630	0.35	+0.5
2,245,949	+		IAI47_10630	0.35	-1.6
2,245,950	-		IAI47_10630	0.36	+1.1
2,245,950	-		IAI47_10630	0.36	-0.8
2,245,950	-		IAI47_10630	0.36	-0.1
2,245,950	-		IAI47_10630	0.36	-0.3
2,245,950	-		IAI47_10630	0.36	+0.5
2,246,040	+		IAI47_10630	0.49	+0.3
2,246,044	-		IAI47_10630	0.50	-2.3
2,246,044	-		IAI47_10630	0.50	-2.1
2,246,044	-		IAI47_10630	0.50	+0.2
2,246,044	-		IAI47_10630	0.50	+0.3
2,246,061	-		IAI47_10630	0.52	-0.6
2,246,072	+		IAI47_10630	0.54	-0.7
2,246,073	-		IAI47_10630	0.54	-0.6
2,246,075	+		IAI47_10630	0.54	-0.1
2,246,075	+		IAI47_10630	0.54	-2.1
2,246,075	+		IAI47_10630	0.54	-1.7
2,246,075	+		IAI47_10630	0.54	-1.0
2,246,075	+		IAI47_10630	0.54	-0.2
2,246,076	-		IAI47_10630	0.54	+0.0
2,246,076	-		IAI47_10630	0.54	+0.3
2,246,082	+		IAI47_10630	0.55	-0.5