Strain Fitness in Pantoea sp. MT58 around IAI47_07910

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,675,155	+		IAI47_07900	0.18	-0.4
1,675,156	-		IAI47_07900	0.18	+0.0
1,675,175	+		IAI47_07900	0.21	-0.1
1,675,176	-		IAI47_07900	0.21	+0.9
1,675,209	+		IAI47_07900	0.26	+0.6
1,675,209	+		IAI47_07900	0.26	+0.7
1,675,209	+		IAI47_07900	0.26	+0.0
1,675,252	+		IAI47_07900	0.32	+1.4
1,675,252	+		IAI47_07900	0.32	-1.6
1,675,252	+		IAI47_07900	0.32	+0.7
1,675,252	+		IAI47_07900	0.32	+1.4
1,675,253	-		IAI47_07900	0.32	+1.8
1,675,253	-		IAI47_07900	0.32	+0.2
1,675,253	-		IAI47_07900	0.32	+0.4
1,675,386	+		IAI47_07900	0.51	+0.8
1,675,386	+		IAI47_07900	0.51	+0.5
1,675,386	+		IAI47_07900	0.51	-2.0
1,675,387	-		IAI47_07900	0.51	-0.4
1,675,479	-		IAI47_07900	0.64	+0.1
1,675,527	+		IAI47_07900	0.71	-0.8
1,675,527	+		IAI47_07900	0.71	+0.1
1,675,527	+		IAI47_07900	0.71	+1.1
1,675,528	-		IAI47_07900	0.71	-1.4
1,675,528	-		IAI47_07900	0.71	-0.6
1,675,528	-		IAI47_07900	0.71	-1.8
1,675,528	-		IAI47_07900	0.71	+0.7
1,675,528	-		IAI47_07900	0.71	+0.5
1,675,528	-		IAI47_07900	0.71	-2.5
1,675,603	+		IAI47_07900	0.82	+0.7
1,675,604	+		IAI47_07900	0.82	-0.1
1,675,604	+		IAI47_07900	0.82	-0.6
1,675,604	+		IAI47_07900	0.82	-1.1
1,675,605	-		IAI47_07900	0.82	+0.8
1,675,605	-		IAI47_07900	0.82	+1.4
1,675,605	-		IAI47_07900	0.82	-1.9
1,675,605	-		IAI47_07900	0.82	+0.9
1,675,614	+		IAI47_07900	0.83	+0.6
1,675,615	-		IAI47_07900	0.83	-1.8
1,675,636	+		IAI47_07900	0.86	-1.2
1,675,636	+		IAI47_07900	0.86	-1.0
1,675,636	+		IAI47_07900	0.86	+2.1
1,675,637	-		IAI47_07900	0.87	+1.0
1,675,637	-		IAI47_07900	0.87	-0.5
1,675,637	-		IAI47_07900	0.87	+0.8
1,675,651	+		IAI47_07900	0.89	+1.2
1,675,652	-		IAI47_07900	0.89	-1.9
1,675,695	-				+2.0
1,675,695	-				+0.7
1,675,726	+				-0.0
1,675,737	+				+1.1
1,675,745	+				+0.1
1,675,745	+				+0.3
1,675,745	+				-0.1
1,675,745	+				+1.6
1,675,745	+				+0.6
1,675,745	+				+1.4
1,675,745	+				+0.0
1,675,745	+				-0.5
1,675,745	+				-0.9
1,675,745	+				+2.3
1,675,746	-				-0.0
1,675,746	-				-0.2
1,675,746	-				-0.8
1,675,746	-				+1.1
1,675,746	-				+0.4
1,675,746	-				+0.1
1,675,746	-				-1.7
1,675,746	-				+1.0
1,675,746	-				-0.0
1,675,747	+				-0.2
1,675,747	+				+0.6
1,675,747	+				+0.4
1,675,747	+				+0.6
1,675,747	+				-1.1
1,675,747	+				+0.1
1,675,747	+				+0.9
1,675,747	+				-2.9
1,675,747	+				+0.9
1,675,747	+				-1.8
1,675,748	-				-1.0
1,675,748	-				-0.6
1,675,748	-				-0.3
1,675,748	-				-0.7
1,675,750	+				-0.0
1,675,751	-				+2.9
1,675,751	-				-0.2
1,675,751	-				+1.4
1,675,751	-				+0.6
1,675,778	-				-0.5
1,675,781	+				-0.6
1,675,817	+				+0.7
1,675,823	-				+0.3
1,675,860	-		IAI47_07905	0.20	-1.9
1,676,083	-				+0.6
1,676,129	+				+0.1
1,676,130	-				-0.1
1,676,130	-				+0.4
1,676,146	+				-0.4
1,676,146	+				+0.1
1,676,146	+				+2.4
1,676,146	+				-1.3
1,676,146	+				+0.9
1,676,146	+				+1.2
1,676,146	+				+0.5
1,676,146	+				-0.1
1,676,147	-				-0.4
1,676,147	-				-1.1
1,676,147	-				-0.7
1,676,147	-				+0.4
1,676,147	-				+0.9
1,676,147	-				-1.5
1,676,147	-				+0.3
1,676,147	-				-0.1
1,676,147	-				+0.1
1,676,147	-				+1.3
1,676,147	-				-1.0
1,676,148	+				+0.2
1,676,148	+				+0.8
1,676,148	+				+0.2
1,676,148	+				+0.6
1,676,148	+				+1.1
1,676,148	+				+0.2
1,676,148	+				-0.9
1,676,148	+				-1.1
1,676,148	+				-0.2
1,676,148	+				-0.8
1,676,148	+				+0.2
1,676,148	+				+1.3
1,676,148	+				+0.1
1,676,149	-				+0.0
1,676,149	-				+1.3
1,676,149	-				-0.2
1,676,149	-				-0.1
1,676,149	-				-0.1
1,676,149	-				-2.3
1,676,149	-				+1.3
1,676,149	-				-0.4
1,676,149	-				-0.9
1,676,149	-				-0.2
1,676,149	-				+0.2
1,676,149	-				+0.3
1,676,149	-				+1.7
1,676,149	-				-1.5
1,676,149	-				+2.0
1,676,214	+				+2.4
1,676,215	-				-0.1
1,676,215	-				-0.6
1,676,216	+				+1.3
1,676,216	+				+1.7
1,676,217	-				-1.1
1,676,217	-				-1.8
1,676,217	-				-0.6
1,676,325	+		IAI47_07910	0.14	+1.3
1,676,325	+		IAI47_07910	0.14	+0.1
1,676,325	+		IAI47_07910	0.14	-1.5
1,676,325	+		IAI47_07910	0.14	-0.1
1,676,325	+		IAI47_07910	0.14	-1.6
1,676,326	-		IAI47_07910	0.14	+0.1
1,676,326	-		IAI47_07910	0.14	-1.1
1,676,326	-		IAI47_07910	0.14	+1.7
1,676,326	-		IAI47_07910	0.14	-0.0
1,676,326	-		IAI47_07910	0.14	+0.9
1,676,403	+		IAI47_07910	0.20	-1.7
1,676,403	+		IAI47_07910	0.20	+1.1
1,676,404	-		IAI47_07910	0.20	-0.8
1,676,404	-		IAI47_07910	0.20	+2.5
1,676,404	-		IAI47_07910	0.20	-0.4
1,676,405	+		IAI47_07910	0.20	+1.6
1,676,405	+		IAI47_07910	0.20	+0.5
1,676,405	+		IAI47_07910	0.20	+0.7
1,676,405	+		IAI47_07910	0.20	+0.7
1,676,406	-		IAI47_07910	0.20	+0.9
1,676,406	-		IAI47_07910	0.20	+0.1
1,676,406	-		IAI47_07910	0.20	+1.9
1,676,406	-		IAI47_07910	0.20	+0.8
1,676,406	-		IAI47_07910	0.20	+1.2
1,676,406	-		IAI47_07910	0.20	+0.2
1,676,406	-		IAI47_07910	0.20	+0.4
1,676,406	-		IAI47_07910	0.20	+0.0
1,676,445	+		IAI47_07910	0.23	+2.4
1,676,445	+		IAI47_07910	0.23	-0.4
1,676,445	+		IAI47_07910	0.23	-0.6
1,676,446	-		IAI47_07910	0.23	-0.8
1,676,446	-		IAI47_07910	0.23	+0.6
1,676,457	+		IAI47_07910	0.24	+0.9
1,676,457	+		IAI47_07910	0.24	-1.5
1,676,491	-		IAI47_07910	0.26	+1.0
1,676,505	-		IAI47_07910	0.27	-0.0
1,676,510	+		IAI47_07910	0.28	+0.8
1,676,511	-		IAI47_07910	0.28	+0.2
1,676,516	+		IAI47_07910	0.28	-0.0
1,676,516	+		IAI47_07910	0.28	+1.7
1,676,517	-		IAI47_07910	0.28	-1.8
1,676,517	-		IAI47_07910	0.28	+1.0
1,676,517	-		IAI47_07910	0.28	-0.2
1,676,524	+		IAI47_07910	0.29	-0.7
1,676,524	+		IAI47_07910	0.29	-0.0
1,676,525	-		IAI47_07910	0.29	-0.4
1,676,525	-		IAI47_07910	0.29	-1.1
1,676,541	+		IAI47_07910	0.30	+0.1
1,676,542	-		IAI47_07910	0.30	-0.6
1,676,542	-		IAI47_07910	0.30	+0.2
1,676,542	-		IAI47_07910	0.30	-2.1
1,676,542	-		IAI47_07910	0.30	+0.1
1,676,543	+		IAI47_07910	0.30	-0.9
1,676,543	+		IAI47_07910	0.30	-0.4
1,676,543	+		IAI47_07910	0.30	+0.7
1,676,543	+		IAI47_07910	0.30	-1.4
1,676,543	+		IAI47_07910	0.30	-0.4
1,676,544	-		IAI47_07910	0.30	-1.2
1,676,544	-		IAI47_07910	0.30	-0.5
1,676,544	-		IAI47_07910	0.30	+0.1
1,676,544	-		IAI47_07910	0.30	-1.0
1,676,544	-		IAI47_07910	0.30	+0.4
1,676,544	-		IAI47_07910	0.30	+0.0
1,676,625	+		IAI47_07910	0.36	+1.1
1,676,626	-		IAI47_07910	0.36	+0.1
1,676,781	+		IAI47_07910	0.47	+0.2
1,676,782	-		IAI47_07910	0.47	+0.3
1,676,782	-		IAI47_07910	0.47	-0.7
1,676,803	-		IAI47_07910	0.49	-0.0
1,676,992	+		IAI47_07910	0.63	+0.6
1,676,992	+		IAI47_07910	0.63	+0.9
1,676,993	-		IAI47_07910	0.63	-0.2
1,677,087	+		IAI47_07910	0.70	-1.1
1,677,088	-		IAI47_07910	0.70	-0.8
1,677,088	-		IAI47_07910	0.70	+1.0
1,677,088	-		IAI47_07910	0.70	+1.2
1,677,088	-		IAI47_07910	0.70	-0.3
1,677,088	-		IAI47_07910	0.70	-0.7
1,677,113	+		IAI47_07910	0.72	+1.6
1,677,114	-		IAI47_07910	0.72	+0.1
1,677,114	-		IAI47_07910	0.72	-0.0
1,677,128	+		IAI47_07910	0.73	-0.9
1,677,128	+		IAI47_07910	0.73	-1.9
1,677,129	-		IAI47_07910	0.73	+0.1
1,677,129	-		IAI47_07910	0.73	+1.3
1,677,147	+		IAI47_07910	0.74	+0.1
1,677,198	+		IAI47_07910	0.78	+0.6
1,677,198	+		IAI47_07910	0.78	+1.6
1,677,250	-		IAI47_07910	0.81	+0.9
1,677,250	-		IAI47_07910	0.81	-0.1
1,677,250	-		IAI47_07910	0.81	+1.3
1,677,254	+		IAI47_07910	0.82	-0.8
1,677,254	+		IAI47_07910	0.82	-0.6
1,677,254	+		IAI47_07910	0.82	+0.3
1,677,254	+		IAI47_07910	0.82	+0.1
1,677,254	+		IAI47_07910	0.82	+0.4
1,677,255	-		IAI47_07910	0.82	-0.6
1,677,330	+		IAI47_07910	0.87	+2.0
1,677,330	+		IAI47_07910	0.87	+1.0
1,677,331	-		IAI47_07910	0.87	-1.4
1,677,399	+				+0.8
1,677,400	-				-0.1
1,677,400	-				+1.4
1,677,416	+				+0.7
1,677,416	+				-0.9
1,677,416	+				+1.1
1,677,417	-				-1.9
1,677,522	+				+0.1
1,677,522	+				-0.8
1,677,522	+				-0.1
1,677,522	+				+2.2
1,677,523	-				-0.3
1,677,523	-				-0.1
1,677,531	+				-0.9
1,677,531	+				+0.6
1,677,531	+				-0.5
1,677,532	-				+0.8
1,677,532	-				-2.1
1,677,532	-				-0.0
1,677,532	-				+0.9
1,677,536	+				+0.7
1,677,537	-				-0.6
1,677,537	-				-0.3
1,677,551	+				+0.7
1,677,551	+				+2.4
1,677,552	-				+0.4
1,677,613	+				+0.3
1,677,613	+				+0.4
1,677,613	+				+2.6
1,677,614	-				+0.1
1,677,614	-				+0.7
1,677,614	-				+0.1
1,677,662	+				-0.4
1,677,662	+				-0.5
1,677,663	-				-1.3
1,677,663	-				-0.6
1,677,663	-				+0.9
1,677,694	+				-0.8
1,677,694	+				-1.5
1,677,695	-				+0.4
1,677,695	-				-1.2
1,677,775	+		IAI47_07915	0.17	+1.4
1,677,775	+		IAI47_07915	0.17	-0.6
1,677,775	+		IAI47_07915	0.17	-0.6
1,677,775	+		IAI47_07915	0.17	+0.3
1,677,775	+		IAI47_07915	0.17	+0.2
1,677,776	-		IAI47_07915	0.17	+1.4
1,677,776	-		IAI47_07915	0.17	-0.0
1,677,776	-		IAI47_07915	0.17	+2.7
1,677,914	+		IAI47_07915	0.46	+1.1
1,677,914	+		IAI47_07915	0.46	+1.4
1,677,914	+		IAI47_07915	0.46	-0.8
1,677,914	+		IAI47_07915	0.46	-2.3
1,677,914	+		IAI47_07915	0.46	+0.8
1,677,914	+		IAI47_07915	0.46	-0.5
1,677,914	+		IAI47_07915	0.46	-0.5
1,677,914	+		IAI47_07915	0.46	+0.9
1,677,915	-		IAI47_07915	0.46	-1.3
1,677,915	-		IAI47_07915	0.46	+0.4
1,677,915	-		IAI47_07915	0.46	-1.1
1,677,922	+		IAI47_07915	0.47	+0.4
1,677,922	+		IAI47_07915	0.47	+1.1
1,677,923	-		IAI47_07915	0.47	-0.4
1,677,923	-		IAI47_07915	0.47	+0.6
1,677,992	+		IAI47_07915	0.62	-0.8
1,677,992	+		IAI47_07915	0.62	-1.4
1,677,992	+		IAI47_07915	0.62	+1.3
1,677,993	-		IAI47_07915	0.62	-0.7
1,677,993	-		IAI47_07915	0.62	-0.1
1,677,993	-		IAI47_07915	0.62	+0.6
1,678,026	+		IAI47_07915	0.69	-0.1
1,678,026	+		IAI47_07915	0.69	-1.0
1,678,026	+		IAI47_07915	0.69	-0.6
1,678,026	+		IAI47_07915	0.69	+0.9
1,678,026	+		IAI47_07915	0.69	-0.6
1,678,027	-		IAI47_07915	0.69	+1.9
1,678,051	-		IAI47_07915	0.74	+0.2
1,678,148	-				-0.6
1,678,148	-				+0.2
1,678,148	-				-0.4
1,678,157	+				+0.5
1,678,157	+				+0.2
1,678,157	+				-0.4
1,678,157	+				-0.8
1,678,158	-				-0.4
1,678,158	-				-1.5
1,678,173	-				+0.4
1,678,184	+				-1.6
1,678,184	+				+0.1
1,678,184	+				-1.7
1,678,184	+				+0.4
1,678,184	+				-0.4
1,678,184	+				-1.5
1,678,184	+				-0.0
1,678,184	+				-2.0
1,678,184	+				+0.2
1,678,184	+				-0.3
1,678,184	+				-0.9
1,678,184	+				+0.6
1,678,185	-				-2.8
1,678,185	-				-0.9
1,678,185	-				-2.1
1,678,185	-				-2.3
1,678,185	-				-0.2
1,678,185	-				+1.3
1,678,185	-				-0.1
1,678,223	+				+0.7
1,678,249	-				-0.4
1,678,259	+		IAI47_07920	0.12	+1.6
1,678,259	+		IAI47_07920	0.12	-0.2
1,678,259	+		IAI47_07920	0.12	+0.6
1,678,259	+		IAI47_07920	0.12	+0.5
1,678,260	-		IAI47_07920	0.12	-1.7
1,678,260	-		IAI47_07920	0.12	+1.0
1,678,310	+		IAI47_07920	0.30	-0.2
1,678,327	+		IAI47_07920	0.37	-0.7
1,678,327	+		IAI47_07920	0.37	+0.6
1,678,327	+		IAI47_07920	0.37	+1.2
1,678,327	+		IAI47_07920	0.37	+1.1
1,678,327	+		IAI47_07920	0.37	-0.9
1,678,328	-		IAI47_07920	0.37	-2.4
1,678,328	-		IAI47_07920	0.37	-1.9
1,678,328	-		IAI47_07920	0.37	-0.4
1,678,328	-		IAI47_07920	0.37	+0.1
1,678,376	+		IAI47_07920	0.54	+0.8
1,678,376	+		IAI47_07920	0.54	+0.3
1,678,377	-		IAI47_07920	0.55	-2.1
1,678,486	+				+0.2
1,678,486	+				+0.7
1,678,486	+				-0.6
1,678,487	-				-0.5
1,678,487	-				-0.6
1,678,499	+				-1.1
1,678,499	+				+0.2
1,678,500	-				-1.7
1,678,500	-				+0.6