Strain Fitness in Pantoea sp. MT58 around IAI47_06830

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,425,128	+		IAI47_06825	0.31	+0.8
1,425,183	+		IAI47_06825	0.36	+0.3
1,425,184	-		IAI47_06825	0.36	+0.1
1,425,221	+		IAI47_06825	0.38	+0.2
1,425,221	+		IAI47_06825	0.38	+1.6
1,425,221	+		IAI47_06825	0.38	-1.8
1,425,247	+		IAI47_06825	0.40	-2.2
1,425,247	+		IAI47_06825	0.40	-0.7
1,425,248	-		IAI47_06825	0.41	+2.0
1,425,283	+		IAI47_06825	0.43	-0.8
1,425,283	+		IAI47_06825	0.43	-0.2
1,425,283	+		IAI47_06825	0.43	-0.7
1,425,283	+		IAI47_06825	0.43	-0.3
1,425,283	+		IAI47_06825	0.43	+0.4
1,425,283	+		IAI47_06825	0.43	+0.5
1,425,283	+		IAI47_06825	0.43	+0.5
1,425,283	+		IAI47_06825	0.43	-0.1
1,425,283	+		IAI47_06825	0.43	+1.0
1,425,283	+		IAI47_06825	0.43	-0.2
1,425,283	+		IAI47_06825	0.43	+0.4
1,425,284	-		IAI47_06825	0.43	+0.5
1,425,284	-		IAI47_06825	0.43	+1.3
1,425,284	-		IAI47_06825	0.43	+0.4
1,425,284	-		IAI47_06825	0.43	-1.2
1,425,284	-		IAI47_06825	0.43	+0.8
1,425,284	-		IAI47_06825	0.43	-1.6
1,425,284	-		IAI47_06825	0.43	-0.5
1,425,284	-		IAI47_06825	0.43	-0.3
1,425,284	-		IAI47_06825	0.43	+0.4
1,425,289	+		IAI47_06825	0.44	-0.1
1,425,289	+		IAI47_06825	0.44	-0.6
1,425,289	+		IAI47_06825	0.44	-2.1
1,425,289	+		IAI47_06825	0.44	-0.2
1,425,289	+		IAI47_06825	0.44	-0.0
1,425,289	+		IAI47_06825	0.44	-1.0
1,425,289	+		IAI47_06825	0.44	-1.1
1,425,290	-		IAI47_06825	0.44	-1.0
1,425,320	+		IAI47_06825	0.46	+0.9
1,425,321	-		IAI47_06825	0.46	-0.4
1,425,337	+		IAI47_06825	0.48	-0.4
1,425,338	-		IAI47_06825	0.48	+0.7
1,425,338	-		IAI47_06825	0.48	+0.3
1,425,340	+		IAI47_06825	0.48	+0.2
1,425,340	+		IAI47_06825	0.48	-0.2
1,425,340	+		IAI47_06825	0.48	+0.7
1,425,341	-		IAI47_06825	0.48	+0.8
1,425,341	-		IAI47_06825	0.48	-1.4
1,425,456	-		IAI47_06825	0.57	+1.8
1,425,500	+		IAI47_06825	0.60	-0.4
1,425,500	+		IAI47_06825	0.60	+1.6
1,425,501	-		IAI47_06825	0.60	-0.4
1,425,535	+		IAI47_06825	0.63	-0.6
1,425,535	+		IAI47_06825	0.63	-0.4
1,425,536	-		IAI47_06825	0.63	+0.3
1,425,536	-		IAI47_06825	0.63	-0.2
1,425,603	+		IAI47_06825	0.68	+1.9
1,425,603	+		IAI47_06825	0.68	-2.7
1,425,603	+		IAI47_06825	0.68	-0.0
1,425,604	-		IAI47_06825	0.68	+1.5
1,425,604	-		IAI47_06825	0.68	+2.2
1,425,604	-		IAI47_06825	0.68	-0.7
1,425,696	+		IAI47_06825	0.75	+0.4
1,425,696	+		IAI47_06825	0.75	+0.1
1,425,696	+		IAI47_06825	0.75	-0.4
1,425,696	+		IAI47_06825	0.75	+0.8
1,425,696	+		IAI47_06825	0.75	-0.0
1,425,696	+		IAI47_06825	0.75	+1.0
1,425,696	+		IAI47_06825	0.75	-0.1
1,425,697	-		IAI47_06825	0.76	+0.3
1,425,833	+		IAI47_06825	0.86	+0.6
1,425,833	+		IAI47_06825	0.86	+0.3
1,425,834	-		IAI47_06825	0.86	-1.5
1,425,844	+		IAI47_06825	0.87	-0.8
1,425,845	-		IAI47_06825	0.87	-0.6
1,425,949	+				+0.3
1,425,949	+				+0.2
1,425,949	+				+0.3
1,425,961	+				-0.4
1,425,961	+				+0.2
1,425,962	-				-0.2
1,425,962	-				-0.6
1,426,010	+				-1.2
1,426,010	+				+2.5
1,426,010	+				-2.2
1,426,010	+				-0.3
1,426,010	+				+0.9
1,426,010	+				-1.8
1,426,010	+				-0.1
1,426,010	+				-0.2
1,426,011	-				-0.8
1,426,011	-				-1.7
1,426,011	-				-0.5
1,426,038	+				+0.7
1,426,039	-				-1.4
1,426,092	+				+0.6
1,426,179	+				+0.1
1,426,179	+				+1.7
1,426,179	+				+1.5
1,426,179	+				-0.4
1,426,180	-				+0.3
1,426,267	+		IAI47_06830	0.17	+1.8
1,426,268	-		IAI47_06830	0.18	-1.6
1,426,268	-		IAI47_06830	0.18	-0.2
1,426,306	+		IAI47_06830	0.21	+0.3
1,426,306	+		IAI47_06830	0.21	+1.2
1,426,307	-		IAI47_06830	0.21	+2.0
1,426,307	-		IAI47_06830	0.21	+0.8
1,426,307	-		IAI47_06830	0.21	-0.6
1,426,346	-		IAI47_06830	0.25	-2.1
1,426,465	+		IAI47_06830	0.37	-0.5
1,426,465	+		IAI47_06830	0.37	+1.0
1,426,549	+		IAI47_06830	0.45	+0.3
1,426,549	+		IAI47_06830	0.45	-0.3
1,426,550	-		IAI47_06830	0.45	-0.5
1,426,550	-		IAI47_06830	0.45	-1.8
1,426,551	+		IAI47_06830	0.45	+0.3
1,426,551	+		IAI47_06830	0.45	-0.1
1,426,552	-		IAI47_06830	0.46	-0.7
1,426,566	-		IAI47_06830	0.47	-1.4
1,426,602	+		IAI47_06830	0.51	-0.4
1,426,603	-		IAI47_06830	0.51	-1.2
1,426,603	-		IAI47_06830	0.51	-1.6
1,426,663	+		IAI47_06830	0.57	+1.3
1,426,664	-		IAI47_06830	0.57	-0.6
1,426,664	-		IAI47_06830	0.57	-3.3
1,426,825	-		IAI47_06830	0.73	-1.7
1,426,894	+		IAI47_06830	0.79	-1.6
1,426,894	+		IAI47_06830	0.79	-0.3
1,426,894	+		IAI47_06830	0.79	+0.4
1,426,895	-		IAI47_06830	0.80	+0.3
1,426,898	+		IAI47_06830	0.80	-1.6
1,426,899	-		IAI47_06830	0.80	-0.6
1,426,899	-		IAI47_06830	0.80	-0.7
1,426,945	-		IAI47_06830	0.84	+1.4
1,426,975	+		IAI47_06830	0.87	+0.3
1,426,975	+		IAI47_06830	0.87	-0.9
1,426,975	+		IAI47_06830	0.87	-0.0
1,426,975	+		IAI47_06830	0.87	-1.9
1,426,975	+		IAI47_06830	0.87	+1.6
1,426,975	+		IAI47_06830	0.87	-0.6
1,426,975	+		IAI47_06830	0.87	-0.5
1,426,975	+		IAI47_06830	0.87	+0.3
1,426,975	+		IAI47_06830	0.87	-0.3
1,426,976	-		IAI47_06830	0.88	-0.5
1,426,976	-		IAI47_06830	0.88	-1.7
1,426,976	-		IAI47_06830	0.88	+1.0
1,426,976	-		IAI47_06830	0.88	-0.3
1,426,976	-		IAI47_06830	0.88	-0.1
1,426,976	-		IAI47_06830	0.88	-0.7
1,426,976	-		IAI47_06830	0.88	-0.5
1,427,004	+				-0.4
1,427,005	-				+0.7
1,427,060	+				+1.1
1,427,061	-				+0.6
1,427,061	-				-1.0
1,427,086	+				+0.1
1,427,114	-				+1.4
1,427,158	+				-1.2
1,427,158	+				+0.7
1,427,158	+				+0.2
1,427,158	+				-1.9
1,427,159	-				-0.8
1,427,159	-				+0.9
1,427,159	-				-0.1
1,427,171	-				-0.0
1,427,176	+				-1.0
1,427,176	+				-1.4
1,427,176	+				+0.1
1,427,177	-				+0.9
1,427,205	+				-2.2
1,427,205	+				-0.6
1,427,206	-				+1.1
1,427,206	-				-0.7
1,427,237	+		IAI47_06835	0.10	+1.1
1,427,237	+		IAI47_06835	0.10	+1.8
1,427,237	+		IAI47_06835	0.10	+0.8
1,427,237	+		IAI47_06835	0.10	-1.8
1,427,237	+		IAI47_06835	0.10	+0.4
1,427,237	+		IAI47_06835	0.10	+1.0
1,427,237	+		IAI47_06835	0.10	-0.2
1,427,237	+		IAI47_06835	0.10	-2.9
1,427,238	-		IAI47_06835	0.10	-0.7
1,427,238	-		IAI47_06835	0.10	-0.0
1,427,238	-		IAI47_06835	0.10	+0.3
1,427,238	-		IAI47_06835	0.10	+0.8
1,427,238	-		IAI47_06835	0.10	+1.0
1,427,238	-		IAI47_06835	0.10	+2.4
1,427,238	-		IAI47_06835	0.10	+0.1
1,427,238	-		IAI47_06835	0.10	-0.0
1,427,238	-		IAI47_06835	0.10	-0.9
1,427,238	-		IAI47_06835	0.10	+0.1
1,427,238	-		IAI47_06835	0.10	-0.7
1,427,239	+		IAI47_06835	0.10	-0.4
1,427,239	+		IAI47_06835	0.10	+1.0
1,427,239	+		IAI47_06835	0.10	+1.0
1,427,239	+		IAI47_06835	0.10	-0.5
1,427,239	+		IAI47_06835	0.10	+0.5
1,427,240	-		IAI47_06835	0.11	+0.4
1,427,240	-		IAI47_06835	0.11	+0.1
1,427,240	-		IAI47_06835	0.11	-0.2
1,427,240	-		IAI47_06835	0.11	-0.1
1,427,240	-		IAI47_06835	0.11	-0.7
1,427,240	-		IAI47_06835	0.11	-0.7
1,427,240	-		IAI47_06835	0.11	-1.4
1,427,240	-		IAI47_06835	0.11	+0.4
1,427,271	+		IAI47_06835	0.13	+0.7
1,427,271	+		IAI47_06835	0.13	-0.9
1,427,271	+		IAI47_06835	0.13	+1.6
1,427,272	-		IAI47_06835	0.13	-0.0
1,427,272	-		IAI47_06835	0.13	-0.3
1,427,272	-		IAI47_06835	0.13	+1.1
1,427,272	-		IAI47_06835	0.13	+1.4
1,427,272	-		IAI47_06835	0.13	-0.5
1,427,272	-		IAI47_06835	0.13	-2.7
1,427,272	-		IAI47_06835	0.13	+0.8
1,427,302	+		IAI47_06835	0.16	-1.7
1,427,302	+		IAI47_06835	0.16	-2.0
1,427,302	+		IAI47_06835	0.16	-1.0
1,427,302	+		IAI47_06835	0.16	-0.4
1,427,302	+		IAI47_06835	0.16	-0.4
1,427,303	-		IAI47_06835	0.16	+0.6
1,427,303	-		IAI47_06835	0.16	-0.9
1,427,303	-		IAI47_06835	0.16	-1.6
1,427,408	-		IAI47_06835	0.24	-1.7
1,427,408	-		IAI47_06835	0.24	+0.6
1,427,429	+		IAI47_06835	0.26	+0.9
1,427,429	+		IAI47_06835	0.26	+0.2
1,427,429	+		IAI47_06835	0.26	+0.6
1,427,429	+		IAI47_06835	0.26	-0.5
1,427,430	-		IAI47_06835	0.26	+0.3
1,427,438	+		IAI47_06835	0.27	+0.4
1,427,479	+		IAI47_06835	0.30	+0.6
1,427,480	-		IAI47_06835	0.30	-2.1
1,427,480	-		IAI47_06835	0.30	+0.8
1,427,510	+		IAI47_06835	0.33	-0.2
1,427,510	+		IAI47_06835	0.33	+0.6
1,427,511	-		IAI47_06835	0.33	-0.8
1,427,511	-		IAI47_06835	0.33	-1.1
1,427,511	-		IAI47_06835	0.33	+1.7
1,427,511	-		IAI47_06835	0.33	-1.0
1,427,511	-		IAI47_06835	0.33	+0.3
1,427,511	-		IAI47_06835	0.33	+1.3
1,427,511	-		IAI47_06835	0.33	-0.4
1,427,511	-		IAI47_06835	0.33	+0.9
1,427,511	-		IAI47_06835	0.33	+0.1
1,427,649	-		IAI47_06835	0.44	-1.6
1,427,764	+		IAI47_06835	0.54	+1.1
1,427,764	+		IAI47_06835	0.54	+1.3
1,427,821	+		IAI47_06835	0.58	-0.7
1,427,822	-		IAI47_06835	0.58	-1.5
1,427,822	-		IAI47_06835	0.58	+1.2
1,427,852	-		IAI47_06835	0.61	+2.0
1,427,852	-		IAI47_06835	0.61	+1.9
1,427,852	-		IAI47_06835	0.61	-1.4
1,427,852	-		IAI47_06835	0.61	+1.6
1,427,852	-		IAI47_06835	0.61	+1.1
1,427,923	+		IAI47_06835	0.67	-1.4
1,427,923	+		IAI47_06835	0.67	-0.2
1,427,924	-		IAI47_06835	0.67	+2.3
1,427,924	-		IAI47_06835	0.67	+0.5
1,427,968	+		IAI47_06835	0.70	+0.4
1,427,968	+		IAI47_06835	0.70	-0.2
1,427,968	+		IAI47_06835	0.70	+0.4
1,427,968	+		IAI47_06835	0.70	-3.1
1,427,969	-		IAI47_06835	0.71	-1.3
1,427,969	-		IAI47_06835	0.71	-1.7
1,427,969	-		IAI47_06835	0.71	-0.2
1,427,969	-		IAI47_06835	0.71	-1.3
1,427,969	-		IAI47_06835	0.71	-0.3
1,428,010	+		IAI47_06835	0.74	-0.1
1,428,020	+		IAI47_06835	0.75	-0.4
1,428,021	-		IAI47_06835	0.75	+1.2
1,428,021	-		IAI47_06835	0.75	-0.7
1,428,021	-		IAI47_06835	0.75	-0.7
1,428,032	+		IAI47_06835	0.76	+1.7
1,428,033	-		IAI47_06835	0.76	+2.3
1,428,033	-		IAI47_06835	0.76	-0.3
1,428,041	+		IAI47_06835	0.76	+1.2
1,428,057	-		IAI47_06835	0.78	+0.3
1,428,071	+		IAI47_06835	0.79	+0.4