Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04625 and IAI47_04630 overlap by 4 nucleotides IAI47_04630 and IAI47_04635 overlap by 4 nucleotides IAI47_04635 and IAI47_04640 overlap by 1 nucleotides
IAI47_04625: IAI47_04625 - ribokinase, at 974,267 to 975,229
_04625
IAI47_04630: IAI47_04630 - allose kinase, at 975,226 to 976,122
_04630
IAI47_04635: IAI47_04635 - ribulose-phosphate 3-epimerase, at 976,119 to 976,811
_04635
IAI47_04640: IAI47_04640 - ABC transporter permease, at 976,811 to 977,860
_04640
Position (kb) 975
976
977 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 974.277 kb on - strand at 974.277 kb on - strand at 974.277 kb on - strand at 974.296 kb on + strand at 974.299 kb on + strand at 974.299 kb on + strand at 974.300 kb on - strand at 974.300 kb on - strand at 974.300 kb on - strand at 974.300 kb on - strand at 974.340 kb on + strand at 974.341 kb on - strand at 974.515 kb on + strand, within IAI47_04625 at 974.515 kb on + strand, within IAI47_04625 at 974.516 kb on - strand, within IAI47_04625 at 974.516 kb on - strand, within IAI47_04625 at 974.536 kb on + strand, within IAI47_04625 at 974.536 kb on + strand, within IAI47_04625 at 974.536 kb on + strand, within IAI47_04625 at 974.536 kb on + strand, within IAI47_04625 at 974.536 kb on + strand, within IAI47_04625 at 974.537 kb on - strand, within IAI47_04625 at 974.537 kb on - strand, within IAI47_04625 at 974.569 kb on + strand, within IAI47_04625 at 974.569 kb on + strand, within IAI47_04625 at 974.590 kb on + strand, within IAI47_04625 at 974.591 kb on - strand, within IAI47_04625 at 974.600 kb on + strand, within IAI47_04625 at 974.601 kb on - strand, within IAI47_04625 at 974.601 kb on - strand, within IAI47_04625 at 974.601 kb on - strand, within IAI47_04625 at 974.635 kb on + strand, within IAI47_04625 at 974.636 kb on - strand, within IAI47_04625 at 974.636 kb on - strand, within IAI47_04625 at 974.643 kb on - strand, within IAI47_04625 at 974.650 kb on + strand, within IAI47_04625 at 974.651 kb on - strand, within IAI47_04625 at 974.675 kb on - strand, within IAI47_04625 at 974.770 kb on + strand, within IAI47_04625 at 974.770 kb on + strand, within IAI47_04625 at 974.771 kb on - strand, within IAI47_04625 at 974.813 kb on + strand, within IAI47_04625 at 974.813 kb on + strand, within IAI47_04625 at 974.814 kb on - strand, within IAI47_04625 at 974.814 kb on - strand, within IAI47_04625 at 974.842 kb on + strand, within IAI47_04625 at 974.842 kb on + strand, within IAI47_04625 at 974.843 kb on - strand, within IAI47_04625 at 974.881 kb on + strand, within IAI47_04625 at 974.881 kb on + strand, within IAI47_04625 at 974.882 kb on - strand, within IAI47_04625 at 974.882 kb on - strand, within IAI47_04625 at 974.908 kb on + strand, within IAI47_04625 at 974.909 kb on - strand, within IAI47_04625 at 974.934 kb on + strand, within IAI47_04625 at 974.934 kb on + strand, within IAI47_04625 at 974.934 kb on + strand, within IAI47_04625 at 974.935 kb on - strand, within IAI47_04625 at 974.935 kb on - strand, within IAI47_04625 at 974.935 kb on - strand, within IAI47_04625 at 974.966 kb on - strand, within IAI47_04625 at 974.971 kb on + strand, within IAI47_04625 at 974.971 kb on + strand, within IAI47_04625 at 974.971 kb on + strand, within IAI47_04625 at 974.971 kb on + strand, within IAI47_04625 at 974.972 kb on - strand, within IAI47_04625 at 974.972 kb on - strand, within IAI47_04625 at 974.980 kb on + strand, within IAI47_04625 at 974.980 kb on + strand, within IAI47_04625 at 974.981 kb on - strand, within IAI47_04625 at 974.981 kb on - strand, within IAI47_04625 at 974.981 kb on - strand, within IAI47_04625 at 974.981 kb on - strand, within IAI47_04625 at 974.981 kb on - strand, within IAI47_04625 at 974.981 kb on - strand, within IAI47_04625 at 974.981 kb on - strand, within IAI47_04625 at 975.057 kb on + strand, within IAI47_04625 at 975.057 kb on + strand, within IAI47_04625 at 975.057 kb on + strand, within IAI47_04625 at 975.058 kb on - strand, within IAI47_04625 at 975.058 kb on - strand, within IAI47_04625 at 975.109 kb on + strand, within IAI47_04625 at 975.196 kb on + strand at 975.196 kb on + strand at 975.196 kb on + strand at 975.197 kb on - strand at 975.215 kb on + strand at 975.215 kb on + strand at 975.215 kb on + strand at 975.215 kb on + strand at 975.215 kb on + strand at 975.215 kb on + strand at 975.215 kb on + strand at 975.216 kb on - strand at 975.285 kb on - strand at 975.433 kb on + strand, within IAI47_04630 at 975.433 kb on + strand, within IAI47_04630 at 975.433 kb on + strand, within IAI47_04630 at 975.433 kb on + strand, within IAI47_04630 at 975.433 kb on + strand, within IAI47_04630 at 975.433 kb on + strand, within IAI47_04630 at 975.433 kb on + strand, within IAI47_04630 at 975.434 kb on - strand, within IAI47_04630 at 975.434 kb on - strand, within IAI47_04630 at 975.434 kb on - strand, within IAI47_04630 at 975.434 kb on - strand, within IAI47_04630 at 975.434 kb on - strand, within IAI47_04630 at 975.435 kb on + strand, within IAI47_04630 at 975.435 kb on + strand, within IAI47_04630 at 975.435 kb on + strand, within IAI47_04630 at 975.435 kb on + strand, within IAI47_04630 at 975.435 kb on + strand, within IAI47_04630 at 975.435 kb on + strand, within IAI47_04630 at 975.435 kb on + strand, within IAI47_04630 at 975.436 kb on - strand, within IAI47_04630 at 975.436 kb on - strand, within IAI47_04630 at 975.436 kb on - strand, within IAI47_04630 at 975.525 kb on + strand, within IAI47_04630 at 975.680 kb on + strand, within IAI47_04630 at 975.680 kb on + strand, within IAI47_04630 at 975.681 kb on - strand, within IAI47_04630 at 975.681 kb on - strand, within IAI47_04630 at 975.681 kb on - strand, within IAI47_04630 at 975.873 kb on + strand, within IAI47_04630 at 975.874 kb on - strand, within IAI47_04630 at 975.933 kb on + strand, within IAI47_04630 at 975.933 kb on + strand, within IAI47_04630 at 975.934 kb on - strand, within IAI47_04630 at 975.934 kb on - strand, within IAI47_04630 at 975.934 kb on - strand, within IAI47_04630 at 975.934 kb on - strand, within IAI47_04630 at 975.972 kb on + strand, within IAI47_04630 at 975.972 kb on + strand, within IAI47_04630 at 975.972 kb on + strand, within IAI47_04630 at 975.972 kb on + strand, within IAI47_04630 at 975.973 kb on - strand, within IAI47_04630 at 975.973 kb on - strand, within IAI47_04630 at 975.973 kb on - strand, within IAI47_04630 at 976.188 kb on + strand at 976.205 kb on + strand, within IAI47_04635 at 976.205 kb on + strand, within IAI47_04635 at 976.206 kb on - strand, within IAI47_04635 at 976.206 kb on - strand, within IAI47_04635 at 976.210 kb on - strand, within IAI47_04635 at 976.210 kb on - strand, within IAI47_04635 at 976.210 kb on - strand, within IAI47_04635 at 976.210 kb on - strand, within IAI47_04635 at 976.253 kb on + strand, within IAI47_04635 at 976.253 kb on + strand, within IAI47_04635 at 976.253 kb on + strand, within IAI47_04635 at 976.253 kb on + strand, within IAI47_04635 at 976.253 kb on + strand, within IAI47_04635 at 976.253 kb on + strand, within IAI47_04635 at 976.254 kb on - strand, within IAI47_04635 at 976.264 kb on + strand, within IAI47_04635 at 976.264 kb on + strand, within IAI47_04635 at 976.264 kb on + strand, within IAI47_04635 at 976.265 kb on - strand, within IAI47_04635 at 976.265 kb on - strand, within IAI47_04635 at 976.277 kb on + strand, within IAI47_04635 at 976.294 kb on + strand, within IAI47_04635 at 976.303 kb on + strand, within IAI47_04635 at 976.303 kb on + strand, within IAI47_04635 at 976.303 kb on + strand, within IAI47_04635 at 976.303 kb on + strand, within IAI47_04635 at 976.303 kb on + strand, within IAI47_04635 at 976.303 kb on + strand, within IAI47_04635 at 976.303 kb on + strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.304 kb on - strand, within IAI47_04635 at 976.309 kb on + strand, within IAI47_04635 at 976.368 kb on - strand, within IAI47_04635 at 976.429 kb on - strand, within IAI47_04635 at 976.430 kb on + strand, within IAI47_04635 at 976.430 kb on + strand, within IAI47_04635 at 976.431 kb on - strand, within IAI47_04635 at 976.431 kb on - strand, within IAI47_04635 at 976.431 kb on - strand, within IAI47_04635 at 976.431 kb on - strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.432 kb on + strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.433 kb on - strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.442 kb on + strand, within IAI47_04635 at 976.443 kb on - strand, within IAI47_04635 at 976.443 kb on - strand, within IAI47_04635 at 976.443 kb on - strand, within IAI47_04635 at 976.443 kb on - strand, within IAI47_04635 at 976.444 kb on + strand, within IAI47_04635 at 976.444 kb on + strand, within IAI47_04635 at 976.444 kb on + strand, within IAI47_04635 at 976.444 kb on + strand, within IAI47_04635 at 976.444 kb on + strand, within IAI47_04635 at 976.444 kb on + strand, within IAI47_04635 at 976.444 kb on + strand, within IAI47_04635 at 976.445 kb on - strand, within IAI47_04635 at 976.445 kb on - strand, within IAI47_04635 at 976.445 kb on - strand, within IAI47_04635 at 976.445 kb on - strand, within IAI47_04635 at 976.445 kb on - strand, within IAI47_04635 at 976.492 kb on + strand, within IAI47_04635 at 976.493 kb on - strand, within IAI47_04635 at 976.493 kb on - strand, within IAI47_04635 at 976.493 kb on - strand, within IAI47_04635 at 976.508 kb on + strand, within IAI47_04635 at 976.508 kb on + strand, within IAI47_04635 at 976.509 kb on - strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.556 kb on + strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.557 kb on - strand, within IAI47_04635 at 976.558 kb on + strand, within IAI47_04635 at 976.558 kb on + strand, within IAI47_04635 at 976.558 kb on + strand, within IAI47_04635 at 976.559 kb on - strand, within IAI47_04635 at 976.559 kb on - strand, within IAI47_04635 at 976.559 kb on - strand, within IAI47_04635 at 976.559 kb on - strand, within IAI47_04635 at 976.559 kb on - strand, within IAI47_04635 at 976.559 kb on - strand, within IAI47_04635 at 976.559 kb on - strand, within IAI47_04635 at 976.595 kb on + strand, within IAI47_04635 at 976.680 kb on + strand, within IAI47_04635 at 976.680 kb on + strand, within IAI47_04635 at 976.680 kb on + strand, within IAI47_04635 at 976.680 kb on + strand, within IAI47_04635 at 976.680 kb on + strand, within IAI47_04635 at 976.680 kb on + strand, within IAI47_04635 at 976.680 kb on + strand, within IAI47_04635 at 976.681 kb on - strand, within IAI47_04635 at 976.682 kb on + strand, within IAI47_04635 at 976.682 kb on + strand, within IAI47_04635 at 976.693 kb on + strand, within IAI47_04635 at 976.693 kb on + strand, within IAI47_04635 at 976.693 kb on + strand, within IAI47_04635 at 976.693 kb on + strand, within IAI47_04635 at 976.693 kb on + strand, within IAI47_04635 at 976.693 kb on + strand, within IAI47_04635 at 976.694 kb on - strand, within IAI47_04635 at 976.749 kb on + strand at 976.750 kb on - strand at 976.778 kb on + strand at 976.778 kb on + strand at 976.778 kb on + strand at 976.778 kb on + strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.779 kb on - strand at 976.806 kb on - strand at 976.814 kb on + strand at 976.815 kb on - strand at 976.815 kb on - strand at 976.815 kb on - strand at 976.815 kb on - strand at 976.815 kb on - strand at 976.815 kb on - strand at 976.840 kb on + strand at 976.840 kb on + strand at 976.840 kb on + strand at 976.840 kb on + strand at 976.840 kb on + strand at 976.841 kb on - strand at 976.841 kb on - strand at 976.868 kb on + strand at 976.868 kb on + strand at 976.868 kb on + strand at 976.897 kb on + strand at 976.898 kb on - strand at 976.907 kb on - strand at 976.928 kb on + strand, within IAI47_04640 at 976.929 kb on - strand, within IAI47_04640 at 976.929 kb on - strand, within IAI47_04640 at 976.929 kb on - strand, within IAI47_04640 at 976.994 kb on + strand, within IAI47_04640 at 976.994 kb on + strand, within IAI47_04640 at 976.994 kb on + strand, within IAI47_04640 at 976.994 kb on + strand, within IAI47_04640 at 976.995 kb on - strand, within IAI47_04640 at 977.081 kb on + strand, within IAI47_04640 at 977.081 kb on + strand, within IAI47_04640 at 977.081 kb on + strand, within IAI47_04640 at 977.082 kb on - strand, within IAI47_04640 at 977.082 kb on - strand, within IAI47_04640 at 977.082 kb on - strand, within IAI47_04640 at 977.091 kb on - strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.097 kb on + strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640 at 977.098 kb on - strand, within IAI47_04640
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 974,277 - +0.4 974,277 - +0.4 974,277 - -2.6 974,296 + -1.4 974,299 + -2.4 974,299 + -0.2 974,300 - +0.3 974,300 - +1.4 974,300 - +1.8 974,300 - +0.1 974,340 + +0.3 974,341 - -0.2 974,515 + IAI47_04625 0.26 +0.4 974,515 + IAI47_04625 0.26 +1.1 974,516 - IAI47_04625 0.26 +0.5 974,516 - IAI47_04625 0.26 -0.7 974,536 + IAI47_04625 0.28 +2.3 974,536 + IAI47_04625 0.28 +0.3 974,536 + IAI47_04625 0.28 +2.2 974,536 + IAI47_04625 0.28 -0.3 974,536 + IAI47_04625 0.28 +1.9 974,537 - IAI47_04625 0.28 -1.3 974,537 - IAI47_04625 0.28 -0.5 974,569 + IAI47_04625 0.31 -0.2 974,569 + IAI47_04625 0.31 -1.8 974,590 + IAI47_04625 0.34 -1.0 974,591 - IAI47_04625 0.34 -0.7 974,600 + IAI47_04625 0.35 +1.4 974,601 - IAI47_04625 0.35 -0.2 974,601 - IAI47_04625 0.35 -0.0 974,601 - IAI47_04625 0.35 +2.4 974,635 + IAI47_04625 0.38 -0.4 974,636 - IAI47_04625 0.38 -0.7 974,636 - IAI47_04625 0.38 +0.2 974,643 - IAI47_04625 0.39 +0.3 974,650 + IAI47_04625 0.40 -0.7 974,651 - IAI47_04625 0.40 +1.2 974,675 - IAI47_04625 0.42 -0.4 974,770 + IAI47_04625 0.52 +0.3 974,770 + IAI47_04625 0.52 -0.7 974,771 - IAI47_04625 0.52 +0.9 974,813 + IAI47_04625 0.57 -1.1 974,813 + IAI47_04625 0.57 +0.3 974,814 - IAI47_04625 0.57 +0.7 974,814 - IAI47_04625 0.57 +0.1 974,842 + IAI47_04625 0.60 +0.4 974,842 + IAI47_04625 0.60 -0.4 974,843 - IAI47_04625 0.60 -0.5 974,881 + IAI47_04625 0.64 -0.7 974,881 + IAI47_04625 0.64 -0.2 974,882 - IAI47_04625 0.64 +1.0 974,882 - IAI47_04625 0.64 +0.5 974,908 + IAI47_04625 0.67 -0.2 974,909 - IAI47_04625 0.67 +0.2 974,934 + IAI47_04625 0.69 -0.9 974,934 + IAI47_04625 0.69 -0.2 974,934 + IAI47_04625 0.69 -0.6 974,935 - IAI47_04625 0.69 -0.7 974,935 - IAI47_04625 0.69 +1.1 974,935 - IAI47_04625 0.69 +2.9 974,966 - IAI47_04625 0.73 +1.1 974,971 + IAI47_04625 0.73 +1.3 974,971 + IAI47_04625 0.73 -1.1 974,971 + IAI47_04625 0.73 -0.9 974,971 + IAI47_04625 0.73 +0.5 974,972 - IAI47_04625 0.73 -0.2 974,972 - IAI47_04625 0.73 -1.5 974,980 + IAI47_04625 0.74 -2.2 974,980 + IAI47_04625 0.74 +1.6 974,981 - IAI47_04625 0.74 -1.0 974,981 - IAI47_04625 0.74 +0.8 974,981 - IAI47_04625 0.74 +0.3 974,981 - IAI47_04625 0.74 -0.6 974,981 - IAI47_04625 0.74 -0.1 974,981 - IAI47_04625 0.74 +0.3 974,981 - IAI47_04625 0.74 +2.3 975,057 + IAI47_04625 0.82 +1.2 975,057 + IAI47_04625 0.82 +0.4 975,057 + IAI47_04625 0.82 -0.6 975,058 - IAI47_04625 0.82 -1.8 975,058 - IAI47_04625 0.82 +1.0 975,109 + IAI47_04625 0.87 +0.4 975,196 + -1.1 975,196 + +0.3 975,196 + -0.6 975,197 - -0.6 975,215 + -2.1 975,215 + +1.6 975,215 + -0.0 975,215 + -0.2 975,215 + -1.1 975,215 + -0.0 975,215 + +0.7 975,216 - +0.5 975,285 - -0.0 975,433 + IAI47_04630 0.23 +1.5 975,433 + IAI47_04630 0.23 -0.7 975,433 + IAI47_04630 0.23 +0.3 975,433 + IAI47_04630 0.23 -0.9 975,433 + IAI47_04630 0.23 +1.0 975,433 + IAI47_04630 0.23 -1.7 975,433 + IAI47_04630 0.23 -1.4 975,434 - IAI47_04630 0.23 +0.8 975,434 - IAI47_04630 0.23 -1.0 975,434 - 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Or see this region's nucleotide sequence