Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02330 and IAI47_02335 are separated by 82 nucleotides IAI47_02335 and IAI47_02340 are separated by 221 nucleotides IAI47_02340 and IAI47_02345 are separated by 182 nucleotides IAI47_02345 and IAI47_02350 are separated by 14 nucleotides IAI47_02350 and IAI47_02355 are separated by 34 nucleotides IAI47_02355 and IAI47_02360 are separated by 221 nucleotides
IAI47_02330: IAI47_02330 - 16S ribosomal RNA, at 480,510 to 482,056
_02330
IAI47_02335: IAI47_02335 - tRNA-Glu, at 482,139 to 482,213
_02335
IAI47_02340: IAI47_02340 - 23S ribosomal RNA, at 482,435 to 485,369
_02340
IAI47_02345: IAI47_02345 - 5S ribosomal RNA, at 485,552 to 485,667
_02345
IAI47_02350: IAI47_02350 - tRNA-Thr, at 485,682 to 485,757
_02350
IAI47_02355: IAI47_02355 - 5S ribosomal RNA, at 485,792 to 485,907
_02355
IAI47_02360: IAI47_02360 - amino acid ABC transporter ATP-binding protein, at 486,129 to 486,890
_02360
Position (kb) 482
483
484
485
486 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 485.395 kb on + strand at 485.405 kb on + strand at 485.470 kb on + strand at 485.478 kb on + strand at 485.478 kb on + strand at 485.478 kb on + strand at 485.478 kb on + strand at 485.478 kb on + strand at 485.478 kb on + strand at 485.478 kb on + strand at 485.479 kb on - strand at 485.521 kb on + strand at 485.521 kb on + strand at 485.652 kb on + strand, within IAI47_02345 at 485.652 kb on + strand, within IAI47_02345 at 485.676 kb on + strand at 485.747 kb on + strand, within IAI47_02350 at 485.780 kb on + strand at 485.780 kb on + strand at 485.780 kb on + strand at 485.914 kb on + strand at 485.914 kb on + strand at 485.914 kb on + strand at 485.914 kb on + strand at 485.914 kb on + strand at 485.914 kb on + strand at 485.914 kb on + strand at 485.914 kb on + strand at 485.933 kb on + strand at 485.933 kb on + strand at 485.933 kb on + strand at 485.933 kb on + strand at 485.989 kb on - strand at 485.989 kb on - strand at 486.001 kb on + strand at 486.001 kb on + strand at 486.001 kb on + strand at 486.001 kb on + strand at 486.001 kb on + strand at 486.001 kb on + strand at 486.002 kb on - strand at 486.002 kb on - strand at 486.002 kb on - strand at 486.109 kb on + strand at 486.109 kb on + strand at 486.109 kb on + strand at 486.109 kb on + strand at 486.109 kb on + strand at 486.110 kb on - strand at 486.110 kb on - strand at 486.110 kb on - strand at 486.110 kb on - strand at 486.110 kb on - strand at 486.126 kb on + strand at 486.127 kb on - strand at 486.137 kb on + strand at 486.147 kb on + strand at 486.174 kb on - strand at 486.174 kb on - strand at 486.174 kb on - strand at 486.230 kb on + strand, within IAI47_02360 at 486.230 kb on + strand, within IAI47_02360 at 486.231 kb on - strand, within IAI47_02360 at 486.231 kb on - strand, within IAI47_02360 at 486.324 kb on - strand, within IAI47_02360 at 486.339 kb on - strand, within IAI47_02360
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 485,395 + -0.9 485,405 + +0.2 485,470 + +0.9 485,478 + +0.8 485,478 + +0.5 485,478 + -0.1 485,478 + +0.7 485,478 + -0.6 485,478 + +1.7 485,478 + -0.4 485,479 - +1.1 485,521 + +0.1 485,521 + -0.2 485,652 + IAI47_02345 0.86 -0.9 485,652 + IAI47_02345 0.86 -0.4 485,676 + -1.2 485,747 + IAI47_02350 0.86 -2.1 485,780 + -0.2 485,780 + +1.6 485,780 + -1.5 485,914 + +0.6 485,914 + -1.0 485,914 + -2.0 485,914 + +1.0 485,914 + -0.2 485,914 + -1.5 485,914 + +0.2 485,914 + -0.1 485,933 + -1.6 485,933 + -0.1 485,933 + -0.5 485,933 + -1.5 485,989 - -0.0 485,989 - +1.0 486,001 + -0.2 486,001 + -0.5 486,001 + -1.9 486,001 + +0.4 486,001 + +1.4 486,001 + +1.6 486,002 - -0.5 486,002 - +2.3 486,002 - -0.1 486,109 + -0.4 486,109 + +2.3 486,109 + -0.8 486,109 + +1.7 486,109 + +0.4 486,110 - +0.4 486,110 - +0.1 486,110 - +0.2 486,110 - +0.1 486,110 - -0.4 486,126 + -1.1 486,127 - +0.2 486,137 + +0.5 486,147 + -3.8 486,174 - -0.6 486,174 - -0.2 486,174 - -1.3 486,230 + IAI47_02360 0.13 +1.6 486,230 + IAI47_02360 0.13 +1.5 486,231 - IAI47_02360 0.13 -1.0 486,231 - IAI47_02360 0.13 -2.0 486,324 - IAI47_02360 0.26 -1.4 486,339 - IAI47_02360 0.28 -0.1
Or see this region's nucleotide sequence