Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS09215

Experiment: McCas_formate_complete no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete no stress control
1,708,740	-				-0.9
1,708,740	-				-0.1
1,708,740	-				+0.4
1,708,761	-				-2.1
1,708,762	+				+0.2
1,708,778	-				-0.5
1,708,780	-				-0.7
1,708,780	-				+0.3
1,708,780	-				-1.7
1,708,780	-				+0.7
1,708,781	+				+1.2
1,708,781	+				+0.5
1,708,781	+				-0.2
1,708,785	-				+0.5
1,708,786	+				-0.6
1,708,786	+				-0.0
1,708,805	+		MMJJ_RS09205	0.13	-0.2
1,708,805	+		MMJJ_RS09205	0.13	-1.2
1,708,816	+		MMJJ_RS09205	0.17	+0.3
1,708,820	+		MMJJ_RS09205	0.19	+0.5
1,708,867	-		MMJJ_RS09205	0.38	-0.2
1,708,921	-		MMJJ_RS09205	0.59	+1.1
1,708,921	-		MMJJ_RS09205	0.59	-0.1
1,708,976	-		MMJJ_RS09205	0.82	+0.6
1,708,976	-		MMJJ_RS09205	0.82	-0.5
1,709,063	+				+0.7
1,709,063	+				-0.5
1,709,063	+				-0.5
1,709,063	+				+0.5
1,709,098	-		MMJJ_RS09210	0.14	-0.2
1,709,099	+		MMJJ_RS09210	0.14	+0.2
1,709,099	+		MMJJ_RS09210	0.14	-1.4
1,709,099	+		MMJJ_RS09210	0.14	+0.6
1,709,099	+		MMJJ_RS09210	0.14	-0.7
1,709,102	-		MMJJ_RS09210	0.14	-0.6
1,709,103	+		MMJJ_RS09210	0.14	-3.3
1,709,103	+		MMJJ_RS09210	0.14	+0.3
1,709,110	+		MMJJ_RS09210	0.16	+0.2
1,709,117	-		MMJJ_RS09210	0.17	-0.4
1,709,117	-		MMJJ_RS09210	0.17	-0.5
1,709,117	-		MMJJ_RS09210	0.17	-1.5
1,709,118	+		MMJJ_RS09210	0.17	+0.7
1,709,131	+		MMJJ_RS09210	0.19	-0.4
1,709,203	+		MMJJ_RS09210	0.31	-0.1
1,709,211	-		MMJJ_RS09210	0.33	-0.6
1,709,245	+		MMJJ_RS09210	0.39	+0.0
1,709,263	+		MMJJ_RS09210	0.42	+1.7
1,709,279	-		MMJJ_RS09210	0.44	-0.1
1,709,342	-		MMJJ_RS09210	0.55	+0.2
1,709,398	+		MMJJ_RS09210	0.65	-1.1
1,709,443	-		MMJJ_RS09210	0.72	-2.7
1,709,452	-		MMJJ_RS09210	0.74	-0.3
1,709,453	+		MMJJ_RS09210	0.74	+0.3
1,709,520	-		MMJJ_RS09210	0.85	+1.4
1,709,538	-		MMJJ_RS09210	0.88	-1.2
1,709,538	-		MMJJ_RS09210	0.88	-1.6
1,709,538	-		MMJJ_RS09210	0.88	+1.1
1,709,585	+				+0.7
1,709,585	+				-0.4
1,709,585	+				+1.2
1,709,589	-				-0.7
1,709,590	+				-0.4
1,709,604	+				+0.5
1,709,629	-				+0.3
1,709,630	+				+0.3
1,709,656	-				+2.3
1,709,656	-				+0.6
1,709,658	-				-0.8
1,709,658	-				-1.6
1,709,658	-				-1.7
1,709,658	-				+1.1
1,709,659	+				-1.1
1,709,659	+				-0.2
1,709,662	+				-2.5
1,709,735	+				+0.4
1,709,736	-				+1.2
1,709,736	-				+0.5
1,709,736	-				+1.0
1,709,736	-				+0.0
1,709,737	+				+0.4
1,709,740	+				-0.4
1,709,740	+				+1.2
1,709,754	-				-0.3
1,709,754	-				-0.3
1,709,754	-				-0.3
1,709,755	+				+0.6
1,709,758	-				-0.7
1,709,759	+				+0.2
1,709,768	-				-0.3
1,709,792	-				-0.2
1,709,792	-				+0.3
1,709,792	-				-2.5
1,709,792	-				+1.2
1,709,792	-				+0.1
1,709,793	+				-1.5
1,709,793	+				-0.5
1,709,793	+				-0.2
1,709,794	-				-0.0
1,709,794	-				-0.5
1,709,795	+				+2.3
1,709,795	+				+1.6
1,709,795	+				-0.2
1,709,799	-				+0.6
1,709,799	-				-1.7
1,709,799	-				+2.3
1,709,800	+				-0.1
1,709,806	-				-1.8
1,709,807	+				-1.3
1,709,807	+				-1.6
1,709,810	+				-2.8
1,709,831	-		MMJJ_RS09215	0.12	+3.0
1,709,831	-		MMJJ_RS09215	0.12	+1.0
1,709,832	+		MMJJ_RS09215	0.13	+3.2
1,709,832	+		MMJJ_RS09215	0.13	+1.7
1,709,833	-		MMJJ_RS09215	0.13	-0.9
1,709,834	+		MMJJ_RS09215	0.13	+1.3
1,709,834	+		MMJJ_RS09215	0.13	+1.1
1,709,836	-		MMJJ_RS09215	0.13	-0.1
1,709,837	+		MMJJ_RS09215	0.13	-1.5
1,709,837	+		MMJJ_RS09215	0.13	-0.3
1,709,839	-		MMJJ_RS09215	0.13	+0.2
1,709,839	-		MMJJ_RS09215	0.13	+0.1
1,709,839	-		MMJJ_RS09215	0.13	+0.9
1,709,845	-		MMJJ_RS09215	0.14	+0.1
1,709,854	-		MMJJ_RS09215	0.15	-1.9
1,709,865	+		MMJJ_RS09215	0.17	+0.5
1,709,879	+		MMJJ_RS09215	0.19	-1.0
1,709,883	-		MMJJ_RS09215	0.19	-2.7
1,709,884	+		MMJJ_RS09215	0.19	+0.9
1,709,884	+		MMJJ_RS09215	0.19	+0.2
1,709,957	-		MMJJ_RS09215	0.29	-0.7
1,709,958	+		MMJJ_RS09215	0.29	+0.1
1,709,958	+		MMJJ_RS09215	0.29	+2.8
1,709,958	+		MMJJ_RS09215	0.29	+0.7
1,709,958	+		MMJJ_RS09215	0.29	-0.3
1,709,990	-		MMJJ_RS09215	0.34	-2.8
1,709,991	+		MMJJ_RS09215	0.34	+0.6
1,709,991	+		MMJJ_RS09215	0.34	-1.1
1,709,997	+		MMJJ_RS09215	0.35	-3.4
1,710,002	-		MMJJ_RS09215	0.35	+0.6
1,710,003	+		MMJJ_RS09215	0.35	+0.3
1,710,003	+		MMJJ_RS09215	0.35	+2.5
1,710,003	+		MMJJ_RS09215	0.35	-0.5
1,710,013	-		MMJJ_RS09215	0.37	+3.5
1,710,016	-		MMJJ_RS09215	0.37	-0.3
1,710,017	+		MMJJ_RS09215	0.37	+1.1
1,710,023	-		MMJJ_RS09215	0.38	-0.7
1,710,046	-		MMJJ_RS09215	0.41	-1.1
1,710,046	-		MMJJ_RS09215	0.41	-0.9
1,710,047	+		MMJJ_RS09215	0.41	-0.9
1,710,047	+		MMJJ_RS09215	0.41	-1.9
1,710,050	+		MMJJ_RS09215	0.42	+2.2
1,710,050	+		MMJJ_RS09215	0.42	+2.0
1,710,058	+		MMJJ_RS09215	0.43	-2.1
1,710,067	-		MMJJ_RS09215	0.44	+0.5
1,710,067	-		MMJJ_RS09215	0.44	+0.4
1,710,068	+		MMJJ_RS09215	0.44	-0.8
1,710,070	-		MMJJ_RS09215	0.44	+0.2
1,710,070	-		MMJJ_RS09215	0.44	+2.0
1,710,071	+		MMJJ_RS09215	0.44	+2.6
1,710,071	+		MMJJ_RS09215	0.44	-0.4
1,710,071	+		MMJJ_RS09215	0.44	+1.2
1,710,079	-		MMJJ_RS09215	0.45	+0.2
1,710,080	+		MMJJ_RS09215	0.46	+1.0
1,710,094	-		MMJJ_RS09215	0.47	+2.5
1,710,100	-		MMJJ_RS09215	0.48	+0.2
1,710,164	+		MMJJ_RS09215	0.57	-0.6
1,710,176	-		MMJJ_RS09215	0.58	-0.1
1,710,198	-		MMJJ_RS09215	0.61	+0.3
1,710,198	-		MMJJ_RS09215	0.61	-1.1
1,710,199	+		MMJJ_RS09215	0.61	-1.1
1,710,199	+		MMJJ_RS09215	0.61	-0.2
1,710,199	+		MMJJ_RS09215	0.61	-0.6
1,710,199	+		MMJJ_RS09215	0.61	+0.4
1,710,199	+		MMJJ_RS09215	0.61	+1.8
1,710,228	-		MMJJ_RS09215	0.65	+0.4
1,710,228	-		MMJJ_RS09215	0.65	+0.7
1,710,229	+		MMJJ_RS09215	0.65	+0.5
1,710,232	-		MMJJ_RS09215	0.66	+2.8
1,710,233	+		MMJJ_RS09215	0.66	+1.6
1,710,233	+		MMJJ_RS09215	0.66	-0.4
1,710,233	+		MMJJ_RS09215	0.66	-1.7
1,710,250	+		MMJJ_RS09215	0.68	-0.0
1,710,250	+		MMJJ_RS09215	0.68	+0.5
1,710,250	+		MMJJ_RS09215	0.68	+0.5
1,710,270	+		MMJJ_RS09215	0.71	+0.5
1,710,272	-		MMJJ_RS09215	0.71	+0.7
1,710,272	-		MMJJ_RS09215	0.71	-2.3
1,710,273	+		MMJJ_RS09215	0.71	+0.3
1,710,273	+		MMJJ_RS09215	0.71	+0.9
1,710,273	+		MMJJ_RS09215	0.71	+0.9
1,710,306	+		MMJJ_RS09215	0.76	+0.9
1,710,325	-		MMJJ_RS09215	0.78	+1.0
1,710,325	-		MMJJ_RS09215	0.78	+2.3
1,710,325	-		MMJJ_RS09215	0.78	+0.3
1,710,326	+		MMJJ_RS09215	0.78	-0.4
1,710,326	+		MMJJ_RS09215	0.78	-2.5
1,710,332	-		MMJJ_RS09215	0.79	+3.1
1,710,332	-		MMJJ_RS09215	0.79	+0.5
1,710,336	-		MMJJ_RS09215	0.80	-0.5
1,710,337	+		MMJJ_RS09215	0.80	+1.2
1,710,375	+		MMJJ_RS09215	0.85	-1.7
1,710,379	+		MMJJ_RS09215	0.85	+1.1
1,710,385	-		MMJJ_RS09215	0.86	-2.8
1,710,385	-		MMJJ_RS09215	0.86	-0.9
1,710,385	-		MMJJ_RS09215	0.86	+0.9
1,710,545	+				-0.6
1,710,682	-				-0.5
1,710,689	-				-0.5
1,710,707	-				-1.1
1,710,708	+				-0.3
1,710,736	+				-1.2
1,710,738	+				+0.9
1,710,758	-				+0.3
1,710,758	-				-1.5
1,710,761	-				+0.3
1,710,761	-				+1.0
1,710,762	+				+0.2
1,710,788	+				+0.1
1,710,820	+		MMJJ_RS09220	0.10	+0.8
1,710,867	-		MMJJ_RS09220	0.23	+1.0
1,710,867	-		MMJJ_RS09220	0.23	+0.0
1,710,868	+		MMJJ_RS09220	0.24	-0.9
1,710,902	-		MMJJ_RS09220	0.33	+2.5
1,710,902	-		MMJJ_RS09220	0.33	+0.5
1,710,925	+		MMJJ_RS09220	0.39	+0.0
1,710,987	+		MMJJ_RS09220	0.57	-0.3
1,710,987	+		MMJJ_RS09220	0.57	-0.5
1,710,994	+		MMJJ_RS09220	0.59	+0.5
1,710,994	+		MMJJ_RS09220	0.59	-1.1
1,710,999	+		MMJJ_RS09220	0.60	-0.1
1,710,999	+		MMJJ_RS09220	0.60	-0.0
1,711,047	+		MMJJ_RS09220	0.74	+1.3
1,711,060	+		MMJJ_RS09220	0.77	-1.6
1,711,060	+		MMJJ_RS09220	0.77	+3.4
1,711,073	-		MMJJ_RS09220	0.81	-0.4
1,711,081	-		MMJJ_RS09220	0.83	+0.3
1,711,081	-		MMJJ_RS09220	0.83	-1.3
1,711,084	+		MMJJ_RS09220	0.84	-0.1
1,711,084	+		MMJJ_RS09220	0.84	+0.2
1,711,084	+		MMJJ_RS09220	0.84	+1.2
1,711,084	+		MMJJ_RS09220	0.84	+2.1
1,711,084	+		MMJJ_RS09220	0.84	-0.9
1,711,087	-		MMJJ_RS09220	0.85	-0.4
1,711,087	-		MMJJ_RS09220	0.85	+0.6
1,711,088	+		MMJJ_RS09220	0.85	-0.5
1,711,088	+		MMJJ_RS09220	0.85	-1.0
1,711,090	-		MMJJ_RS09220	0.86	-0.5
1,711,090	-		MMJJ_RS09220	0.86	+0.0
1,711,091	+		MMJJ_RS09220	0.86	+1.0
1,711,095	-				-1.1
1,711,095	-		MMJJ_RS09220	0.87	-2.5
1,711,095	-		MMJJ_RS09220	0.87	-0.1
1,711,096	+		MMJJ_RS09220	0.87	+0.8
1,711,109	+				+0.7
1,711,111	+				+0.6
1,711,168	+				-1.0
1,711,193	+				-2.3
1,711,196	-				+0.3
1,711,220	-				-0.5
1,711,221	+				+0.3
1,711,251	+				+0.4
1,711,297	+				-0.4
1,711,297	+				-2.8
1,711,321	-				+0.3
1,711,344	-				+0.2
1,711,345	+				+0.4
1,711,352	+				+0.8
1,711,352	+				-2.3
1,711,357	+				+0.5
1,711,372	+				+0.5
1,711,486	-		MMJJ_RS09225	0.43	+0.7