Experiment: McCas_formate_complete no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02955 and MMJJ_RS02960 overlap by 14 nucleotides MMJJ_RS02960 and MMJJ_RS02965 are separated by 0 nucleotides MMJJ_RS02965 and MMJJ_RS02970 are separated by 266 nucleotides MMJJ_RS02970 and MMJJ_RS02975 are separated by 38 nucleotides
MMJJ_RS02955: MMJJ_RS02955 - glutamate-cysteine ligase family protein, at 551,250 to 552,353
_RS02955
MMJJ_RS02960: MMJJ_RS02960 - RimK family alpha-L-glutamate ligase, at 552,340 to 553,290
_RS02960
MMJJ_RS02965: MMJJ_RS02965 - RimK-like ATPgrasp N-terminal domain-containing protein, at 553,291 to 553,896
_RS02965
MMJJ_RS02970: MMJJ_RS02970 - DUF378 domain-containing protein, at 554,163 to 554,411
_RS02970
MMJJ_RS02975: MMJJ_RS02975 - NAD(P)H-dependent oxidoreductase, at 554,450 to 554,944
_RS02975
Position (kb) 553
554 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 552.376 kb on - strand at 552.376 kb on - strand at 552.432 kb on - strand at 552.433 kb on + strand at 552.434 kb on - strand at 552.434 kb on - strand at 552.434 kb on - strand at 552.434 kb on - strand at 552.434 kb on - strand at 552.434 kb on - strand at 552.435 kb on + strand, within MMJJ_RS02960 at 552.435 kb on + strand, within MMJJ_RS02960 at 552.435 kb on + strand, within MMJJ_RS02960 at 552.435 kb on + strand, within MMJJ_RS02960 at 552.435 kb on + strand, within MMJJ_RS02960 at 552.435 kb on + strand, within MMJJ_RS02960 at 552.435 kb on + strand, within MMJJ_RS02960 at 552.447 kb on - strand, within MMJJ_RS02960 at 552.506 kb on + strand, within MMJJ_RS02960 at 552.514 kb on - strand, within MMJJ_RS02960 at 552.515 kb on + strand, within MMJJ_RS02960 at 552.515 kb on + strand, within MMJJ_RS02960 at 552.515 kb on + strand, within MMJJ_RS02960 at 552.518 kb on - strand, within MMJJ_RS02960 at 552.518 kb on - strand, within MMJJ_RS02960 at 552.518 kb on - strand, within MMJJ_RS02960 at 552.598 kb on - strand, within MMJJ_RS02960 at 552.601 kb on + strand, within MMJJ_RS02960 at 552.629 kb on + strand, within MMJJ_RS02960 at 552.642 kb on - strand, within MMJJ_RS02960 at 552.643 kb on + strand, within MMJJ_RS02960 at 552.648 kb on + strand, within MMJJ_RS02960 at 552.648 kb on + strand, within MMJJ_RS02960 at 552.650 kb on + strand, within MMJJ_RS02960 at 552.676 kb on - strand, within MMJJ_RS02960 at 552.676 kb on - strand, within MMJJ_RS02960 at 552.705 kb on + strand, within MMJJ_RS02960 at 552.705 kb on + strand, within MMJJ_RS02960 at 552.717 kb on + strand, within MMJJ_RS02960 at 552.734 kb on + strand, within MMJJ_RS02960 at 552.787 kb on - strand, within MMJJ_RS02960 at 552.787 kb on - strand, within MMJJ_RS02960 at 552.787 kb on - strand, within MMJJ_RS02960 at 552.817 kb on - strand, within MMJJ_RS02960 at 552.835 kb on - strand, within MMJJ_RS02960 at 552.893 kb on + strand, within MMJJ_RS02960 at 552.940 kb on + strand, within MMJJ_RS02960 at 552.940 kb on + strand, within MMJJ_RS02960 at 552.940 kb on + strand, within MMJJ_RS02960 at 552.979 kb on - strand, within MMJJ_RS02960 at 552.979 kb on - strand, within MMJJ_RS02960 at 552.979 kb on - strand, within MMJJ_RS02960 at 552.984 kb on - strand, within MMJJ_RS02960 at 552.992 kb on + strand, within MMJJ_RS02960 at 553.005 kb on + strand, within MMJJ_RS02960 at 553.013 kb on + strand, within MMJJ_RS02960 at 553.051 kb on - strand, within MMJJ_RS02960 at 553.099 kb on - strand, within MMJJ_RS02960 at 553.126 kb on - strand, within MMJJ_RS02960 at 553.151 kb on + strand, within MMJJ_RS02960 at 553.160 kb on + strand, within MMJJ_RS02960 at 553.209 kb on - strand at 553.248 kb on - strand at 553.248 kb on - strand at 553.248 kb on - strand at 553.249 kb on + strand at 553.249 kb on + strand at 553.480 kb on - strand, within MMJJ_RS02965 at 553.481 kb on + strand, within MMJJ_RS02965 at 553.611 kb on - strand, within MMJJ_RS02965 at 553.613 kb on - strand, within MMJJ_RS02965 at 553.614 kb on + strand, within MMJJ_RS02965 at 553.614 kb on + strand, within MMJJ_RS02965 at 553.614 kb on + strand, within MMJJ_RS02965 at 553.614 kb on + strand, within MMJJ_RS02965 at 553.614 kb on + strand, within MMJJ_RS02965 at 553.614 kb on + strand, within MMJJ_RS02965 at 553.616 kb on - strand, within MMJJ_RS02965 at 553.616 kb on - strand, within MMJJ_RS02965 at 553.617 kb on + strand, within MMJJ_RS02965 at 553.617 kb on + strand, within MMJJ_RS02965 at 553.638 kb on + strand, within MMJJ_RS02965 at 553.643 kb on + strand, within MMJJ_RS02965 at 553.643 kb on + strand, within MMJJ_RS02965 at 553.747 kb on + strand, within MMJJ_RS02965 at 553.749 kb on + strand, within MMJJ_RS02965 at 554.009 kb on - strand at 554.009 kb on - strand at 554.010 kb on + strand at 554.010 kb on + strand at 554.010 kb on + strand at 554.011 kb on - strand at 554.023 kb on - strand at 554.024 kb on + strand at 554.095 kb on - strand at 554.095 kb on - strand at 554.095 kb on - strand at 554.096 kb on + strand at 554.096 kb on + strand at 554.097 kb on - strand at 554.098 kb on + strand at 554.116 kb on + strand at 554.120 kb on - strand at 554.121 kb on + strand at 554.121 kb on + strand at 554.121 kb on + strand at 554.121 kb on + strand at 554.122 kb on - strand at 554.123 kb on + strand at 554.147 kb on + strand at 554.147 kb on + strand at 554.160 kb on + strand at 554.181 kb on + strand at 554.242 kb on - strand, within MMJJ_RS02970 at 554.246 kb on - strand, within MMJJ_RS02970 at 554.247 kb on + strand, within MMJJ_RS02970 at 554.247 kb on + strand, within MMJJ_RS02970 at 554.260 kb on - strand, within MMJJ_RS02970 at 554.273 kb on - strand, within MMJJ_RS02970 at 554.273 kb on - strand, within MMJJ_RS02970 at 554.274 kb on + strand, within MMJJ_RS02970 at 554.297 kb on - strand, within MMJJ_RS02970 at 554.297 kb on - strand, within MMJJ_RS02970 at 554.297 kb on - strand, within MMJJ_RS02970 at 554.297 kb on - strand, within MMJJ_RS02970 at 554.297 kb on - strand, within MMJJ_RS02970 at 554.298 kb on + strand, within MMJJ_RS02970 at 554.298 kb on + strand, within MMJJ_RS02970 at 554.298 kb on + strand, within MMJJ_RS02970 at 554.300 kb on - strand, within MMJJ_RS02970 at 554.302 kb on - strand, within MMJJ_RS02970 at 554.302 kb on - strand, within MMJJ_RS02970 at 554.303 kb on + strand, within MMJJ_RS02970 at 554.303 kb on + strand, within MMJJ_RS02970 at 554.303 kb on + strand, within MMJJ_RS02970 at 554.303 kb on + strand, within MMJJ_RS02970 at 554.303 kb on + strand, within MMJJ_RS02970 at 554.318 kb on + strand, within MMJJ_RS02970 at 554.321 kb on + strand, within MMJJ_RS02970 at 554.353 kb on - strand, within MMJJ_RS02970 at 554.353 kb on - strand, within MMJJ_RS02970 at 554.354 kb on + strand, within MMJJ_RS02970 at 554.354 kb on + strand, within MMJJ_RS02970 at 554.354 kb on + strand, within MMJJ_RS02970 at 554.355 kb on - strand, within MMJJ_RS02970 at 554.356 kb on + strand, within MMJJ_RS02970 at 554.357 kb on - strand, within MMJJ_RS02970 at 554.357 kb on - strand, within MMJJ_RS02970 at 554.357 kb on - strand, within MMJJ_RS02970 at 554.358 kb on + strand, within MMJJ_RS02970 at 554.358 kb on + strand, within MMJJ_RS02970 at 554.372 kb on + strand, within MMJJ_RS02970 at 554.380 kb on - strand, within MMJJ_RS02970 at 554.381 kb on + strand, within MMJJ_RS02970 at 554.382 kb on - strand, within MMJJ_RS02970 at 554.382 kb on - strand, within MMJJ_RS02970 at 554.382 kb on - strand, within MMJJ_RS02970 at 554.382 kb on - strand, within MMJJ_RS02970 at 554.382 kb on - strand, within MMJJ_RS02970 at 554.382 kb on - strand, within MMJJ_RS02970 at 554.382 kb on - strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.383 kb on + strand, within MMJJ_RS02970 at 554.392 kb on + strand at 554.392 kb on + strand at 554.392 kb on + strand at 554.395 kb on + strand at 554.427 kb on + strand at 554.469 kb on - strand at 554.476 kb on - strand at 554.477 kb on + strand at 554.477 kb on + strand at 554.477 kb on + strand at 554.477 kb on + strand at 554.477 kb on + strand at 554.480 kb on - strand at 554.496 kb on - strand at 554.497 kb on + strand at 554.522 kb on - strand, within MMJJ_RS02975 at 554.522 kb on - strand, within MMJJ_RS02975 at 554.531 kb on - strand, within MMJJ_RS02975 at 554.532 kb on + strand, within MMJJ_RS02975 at 554.532 kb on + strand, within MMJJ_RS02975 at 554.551 kb on - strand, within MMJJ_RS02975 at 554.594 kb on + strand, within MMJJ_RS02975 at 554.594 kb on + strand, within MMJJ_RS02975 at 554.653 kb on + strand, within MMJJ_RS02975 at 554.713 kb on - strand, within MMJJ_RS02975 at 554.718 kb on + strand, within MMJJ_RS02975 at 554.888 kb on - strand, within MMJJ_RS02975 at 554.888 kb on - strand, within MMJJ_RS02975 at 554.889 kb on + strand, within MMJJ_RS02975 at 554.892 kb on - strand, within MMJJ_RS02975 at 554.892 kb on - strand, within MMJJ_RS02975 at 554.892 kb on - strand, within MMJJ_RS02975 at 554.892 kb on - strand, within MMJJ_RS02975 at 554.893 kb on + strand, within MMJJ_RS02975
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete no stress control remove 552,376 - +0.0 552,376 - +2.1 552,432 - -0.5 552,433 + +0.0 552,434 - +0.2 552,434 - +0.6 552,434 - +0.7 552,434 - -1.4 552,434 - -0.8 552,434 - -0.3 552,435 + MMJJ_RS02960 0.10 +1.9 552,435 + MMJJ_RS02960 0.10 -2.5 552,435 + MMJJ_RS02960 0.10 +1.2 552,435 + MMJJ_RS02960 0.10 -0.4 552,435 + MMJJ_RS02960 0.10 -1.5 552,435 + MMJJ_RS02960 0.10 -0.0 552,435 + MMJJ_RS02960 0.10 -1.5 552,447 - MMJJ_RS02960 0.11 +0.9 552,506 + MMJJ_RS02960 0.17 -0.7 552,514 - MMJJ_RS02960 0.18 +0.2 552,515 + MMJJ_RS02960 0.18 +0.6 552,515 + MMJJ_RS02960 0.18 +1.0 552,515 + MMJJ_RS02960 0.18 -1.1 552,518 - MMJJ_RS02960 0.19 -0.5 552,518 - MMJJ_RS02960 0.19 -0.3 552,518 - MMJJ_RS02960 0.19 +0.5 552,598 - MMJJ_RS02960 0.27 +0.4 552,601 + MMJJ_RS02960 0.27 +2.4 552,629 + MMJJ_RS02960 0.30 +1.3 552,642 - MMJJ_RS02960 0.32 +0.1 552,643 + MMJJ_RS02960 0.32 +0.7 552,648 + MMJJ_RS02960 0.32 +1.9 552,648 + MMJJ_RS02960 0.32 +0.7 552,650 + MMJJ_RS02960 0.33 +2.6 552,676 - MMJJ_RS02960 0.35 -0.9 552,676 - MMJJ_RS02960 0.35 -0.2 552,705 + MMJJ_RS02960 0.38 -0.4 552,705 + MMJJ_RS02960 0.38 +0.5 552,717 + MMJJ_RS02960 0.40 +1.1 552,734 + MMJJ_RS02960 0.41 -1.8 552,787 - MMJJ_RS02960 0.47 -1.7 552,787 - MMJJ_RS02960 0.47 -0.1 552,787 - MMJJ_RS02960 0.47 +0.1 552,817 - MMJJ_RS02960 0.50 -0.7 552,835 - MMJJ_RS02960 0.52 -0.9 552,893 + MMJJ_RS02960 0.58 -1.7 552,940 + MMJJ_RS02960 0.63 +0.8 552,940 + MMJJ_RS02960 0.63 -1.8 552,940 + MMJJ_RS02960 0.63 -1.0 552,979 - MMJJ_RS02960 0.67 -1.5 552,979 - MMJJ_RS02960 0.67 +2.2 552,979 - MMJJ_RS02960 0.67 -1.8 552,984 - MMJJ_RS02960 0.68 +0.0 552,992 + MMJJ_RS02960 0.69 +1.6 553,005 + MMJJ_RS02960 0.70 +0.6 553,013 + MMJJ_RS02960 0.71 -0.7 553,051 - MMJJ_RS02960 0.75 -0.6 553,099 - MMJJ_RS02960 0.80 +0.4 553,126 - MMJJ_RS02960 0.83 +1.7 553,151 + MMJJ_RS02960 0.85 +1.9 553,160 + MMJJ_RS02960 0.86 +0.5 553,209 - -1.1 553,248 - -2.0 553,248 - -1.1 553,248 - +0.5 553,249 + -0.7 553,249 + -0.2 553,480 - MMJJ_RS02965 0.31 +1.9 553,481 + MMJJ_RS02965 0.31 +1.1 553,611 - MMJJ_RS02965 0.53 -0.3 553,613 - MMJJ_RS02965 0.53 -2.3 553,614 + MMJJ_RS02965 0.53 -0.2 553,614 + MMJJ_RS02965 0.53 +0.1 553,614 + MMJJ_RS02965 0.53 +0.5 553,614 + MMJJ_RS02965 0.53 +0.1 553,614 + MMJJ_RS02965 0.53 +0.4 553,614 + MMJJ_RS02965 0.53 +1.2 553,616 - MMJJ_RS02965 0.54 +2.0 553,616 - MMJJ_RS02965 0.54 -1.8 553,617 + MMJJ_RS02965 0.54 +1.8 553,617 + MMJJ_RS02965 0.54 +1.0 553,638 + MMJJ_RS02965 0.57 +0.6 553,643 + MMJJ_RS02965 0.58 -3.0 553,643 + MMJJ_RS02965 0.58 -0.2 553,747 + MMJJ_RS02965 0.75 -2.1 553,749 + MMJJ_RS02965 0.76 -0.8 554,009 - +1.7 554,009 - +0.4 554,010 + +0.2 554,010 + -0.4 554,010 + -0.5 554,011 - -0.5 554,023 - +1.9 554,024 + +0.7 554,095 - -1.4 554,095 - -3.1 554,095 - -0.1 554,096 + +0.5 554,096 + -0.1 554,097 - -0.0 554,098 + -0.2 554,116 + -1.0 554,120 - +0.1 554,121 + +1.0 554,121 + +0.1 554,121 + -0.2 554,121 + +0.1 554,122 - -0.9 554,123 + +0.1 554,147 + +0.1 554,147 + +0.5 554,160 + -2.6 554,181 + -0.5 554,242 - MMJJ_RS02970 0.32 -0.2 554,246 - MMJJ_RS02970 0.33 -0.0 554,247 + MMJJ_RS02970 0.34 +0.9 554,247 + MMJJ_RS02970 0.34 +0.6 554,260 - MMJJ_RS02970 0.39 +0.4 554,273 - MMJJ_RS02970 0.44 +3.0 554,273 - MMJJ_RS02970 0.44 +0.3 554,274 + MMJJ_RS02970 0.45 -0.8 554,297 - MMJJ_RS02970 0.54 -0.2 554,297 - MMJJ_RS02970 0.54 -1.7 554,297 - MMJJ_RS02970 0.54 -2.1 554,297 - MMJJ_RS02970 0.54 -0.0 554,297 - MMJJ_RS02970 0.54 +1.6 554,298 + MMJJ_RS02970 0.54 +0.5 554,298 + MMJJ_RS02970 0.54 -1.4 554,298 + MMJJ_RS02970 0.54 +0.2 554,300 - MMJJ_RS02970 0.55 +0.8 554,302 - MMJJ_RS02970 0.56 +2.0 554,302 - MMJJ_RS02970 0.56 +0.9 554,303 + MMJJ_RS02970 0.56 -1.1 554,303 + MMJJ_RS02970 0.56 -4.2 554,303 + MMJJ_RS02970 0.56 +1.4 554,303 + MMJJ_RS02970 0.56 -0.2 554,303 + MMJJ_RS02970 0.56 -0.1 554,318 + MMJJ_RS02970 0.62 -2.1 554,321 + MMJJ_RS02970 0.63 -2.5 554,353 - MMJJ_RS02970 0.76 +0.4 554,353 - MMJJ_RS02970 0.76 -0.2 554,354 + MMJJ_RS02970 0.77 -2.3 554,354 + MMJJ_RS02970 0.77 -0.2 554,354 + MMJJ_RS02970 0.77 -0.1 554,355 - MMJJ_RS02970 0.77 -0.8 554,356 + MMJJ_RS02970 0.78 +0.7 554,357 - MMJJ_RS02970 0.78 -1.2 554,357 - MMJJ_RS02970 0.78 -0.6 554,357 - MMJJ_RS02970 0.78 +0.1 554,358 + MMJJ_RS02970 0.78 +1.9 554,358 + MMJJ_RS02970 0.78 -0.4 554,372 + MMJJ_RS02970 0.84 -1.0 554,380 - MMJJ_RS02970 0.87 -0.3 554,381 + MMJJ_RS02970 0.88 -0.2 554,382 - MMJJ_RS02970 0.88 +2.7 554,382 - MMJJ_RS02970 0.88 -0.4 554,382 - MMJJ_RS02970 0.88 -0.0 554,382 - MMJJ_RS02970 0.88 -0.5 554,382 - MMJJ_RS02970 0.88 -1.1 554,382 - MMJJ_RS02970 0.88 +0.6 554,382 - MMJJ_RS02970 0.88 -0.2 554,383 + MMJJ_RS02970 0.88 -1.0 554,383 + MMJJ_RS02970 0.88 +1.3 554,383 + MMJJ_RS02970 0.88 -0.1 554,383 + MMJJ_RS02970 0.88 +0.5 554,383 + MMJJ_RS02970 0.88 -3.8 554,383 + MMJJ_RS02970 0.88 +0.2 554,383 + MMJJ_RS02970 0.88 -0.3 554,383 + MMJJ_RS02970 0.88 -2.3 554,392 + -0.8 554,392 + +1.5 554,392 + +0.4 554,395 + +0.5 554,427 + -0.4 554,469 - -0.7 554,476 - -1.0 554,477 + +0.7 554,477 + -0.0 554,477 + -1.3 554,477 + +0.2 554,477 + -0.2 554,480 - -0.3 554,496 - +0.4 554,497 + -2.1 554,522 - MMJJ_RS02975 0.15 -0.1 554,522 - MMJJ_RS02975 0.15 +0.9 554,531 - MMJJ_RS02975 0.16 -0.9 554,532 + MMJJ_RS02975 0.17 -0.2 554,532 + MMJJ_RS02975 0.17 -0.4 554,551 - MMJJ_RS02975 0.20 +0.0 554,594 + MMJJ_RS02975 0.29 -1.5 554,594 + MMJJ_RS02975 0.29 -2.1 554,653 + MMJJ_RS02975 0.41 -1.1 554,713 - MMJJ_RS02975 0.53 -2.0 554,718 + MMJJ_RS02975 0.54 -1.9 554,888 - MMJJ_RS02975 0.88 -0.2 554,888 - MMJJ_RS02975 0.88 +0.0 554,889 + MMJJ_RS02975 0.89 +0.5 554,892 - MMJJ_RS02975 0.89 +0.2 554,892 - MMJJ_RS02975 0.89 +0.4 554,892 - MMJJ_RS02975 0.89 +0.0 554,892 - MMJJ_RS02975 0.89 -1.3 554,893 + MMJJ_RS02975 0.89 -0.1
Or see this region's nucleotide sequence