Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03915

Experiment: McCas_formate_complete no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03905 and MMJJ_RS03910 are separated by 25 nucleotidesMMJJ_RS03910 and MMJJ_RS03915 are separated by 1 nucleotidesMMJJ_RS03915 and MMJJ_RS03920 are separated by 9 nucleotides MMJJ_RS03905: MMJJ_RS03905 - ATP-binding cassette domain-containing protein, at 729,597 to 730,388 _RS03905 MMJJ_RS03910: MMJJ_RS03910 - hypothetical protein, at 730,414 to 731,112 _RS03910 MMJJ_RS03915: MMJJ_RS03915 - hypothetical protein, at 731,114 to 731,773 _RS03915 MMJJ_RS03920: MMJJ_RS03920 - nickel pincer cofactor biosynthesis protein LarC, at 731,783 to 732,997 _RS03920 Position (kb) 731 732Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 730.169 kb on + strand, within MMJJ_RS03905at 730.172 kb on - strand, within MMJJ_RS03905at 730.173 kb on + strand, within MMJJ_RS03905at 730.173 kb on + strand, within MMJJ_RS03905at 730.360 kb on - strandat 730.360 kb on - strandat 730.386 kb on - strandat 730.387 kb on + strandat 730.472 kb on - strandat 730.484 kb on - strand, within MMJJ_RS03910at 730.484 kb on - strand, within MMJJ_RS03910at 730.512 kb on - strand, within MMJJ_RS03910at 730.527 kb on + strand, within MMJJ_RS03910at 730.528 kb on - strandat 730.529 kb on + strand, within MMJJ_RS03910at 730.529 kb on + strand, within MMJJ_RS03910at 730.529 kb on + strand, within MMJJ_RS03910at 730.530 kb on - strand, within MMJJ_RS03910at 730.530 kb on - strand, within MMJJ_RS03910at 730.583 kb on - strand, within MMJJ_RS03910at 730.588 kb on + strand, within MMJJ_RS03910at 730.588 kb on + strand, within MMJJ_RS03910at 730.588 kb on + strand, within MMJJ_RS03910at 730.588 kb on + strand, within MMJJ_RS03910at 730.593 kb on - strand, within MMJJ_RS03910at 730.594 kb on + strand, within MMJJ_RS03910at 730.594 kb on + strand, within MMJJ_RS03910at 730.594 kb on + strand, within MMJJ_RS03910at 730.618 kb on - strand, within MMJJ_RS03910at 730.621 kb on + strand, within MMJJ_RS03910at 730.670 kb on - strand, within MMJJ_RS03910at 730.671 kb on + strand, within MMJJ_RS03910at 730.671 kb on + strand, within MMJJ_RS03910at 730.671 kb on + strand, within MMJJ_RS03910at 730.764 kb on - strand, within MMJJ_RS03910at 730.815 kb on + strand, within MMJJ_RS03910at 730.818 kb on - strand, within MMJJ_RS03910at 730.818 kb on - strand, within MMJJ_RS03910at 730.818 kb on - strand, within MMJJ_RS03910at 730.819 kb on + strand, within MMJJ_RS03910at 730.827 kb on - strand, within MMJJ_RS03910at 730.827 kb on - strand, within MMJJ_RS03910at 730.827 kb on - strand, within MMJJ_RS03910at 730.830 kb on - strand, within MMJJ_RS03910at 730.830 kb on - strand, within MMJJ_RS03910at 730.830 kb on - strand, within MMJJ_RS03910at 730.830 kb on - strand, within MMJJ_RS03910at 730.831 kb on + strand, within MMJJ_RS03910at 730.831 kb on + strand, within MMJJ_RS03910at 730.831 kb on + strand, within MMJJ_RS03910at 730.833 kb on + strand, within MMJJ_RS03910at 730.833 kb on + strand, within MMJJ_RS03910at 730.833 kb on + strand, within MMJJ_RS03910at 730.833 kb on + strand, within MMJJ_RS03910at 730.853 kb on - strand, within MMJJ_RS03910at 730.890 kb on - strand, within MMJJ_RS03910at 730.891 kb on + strand, within MMJJ_RS03910at 730.893 kb on - strand, within MMJJ_RS03910at 730.893 kb on - strand, within MMJJ_RS03910at 730.894 kb on + strand, within MMJJ_RS03910at 730.894 kb on + strand, within MMJJ_RS03910at 730.895 kb on - strand, within MMJJ_RS03910at 730.895 kb on - strand, within MMJJ_RS03910at 730.895 kb on - strand, within MMJJ_RS03910at 730.897 kb on - strand, within MMJJ_RS03910at 730.897 kb on - strand, within MMJJ_RS03910at 730.897 kb on - strand, within MMJJ_RS03910at 730.897 kb on - strand, within MMJJ_RS03910at 730.897 kb on - strand, within MMJJ_RS03910at 730.898 kb on + strand, within MMJJ_RS03910at 730.898 kb on + strand, within MMJJ_RS03910at 730.905 kb on + strand, within MMJJ_RS03910at 730.949 kb on - strand, within MMJJ_RS03910at 731.099 kb on + strandat 731.135 kb on + strandat 731.153 kb on - strandat 731.242 kb on + strand, within MMJJ_RS03915at 731.267 kb on + strand, within MMJJ_RS03915at 731.355 kb on - strand, within MMJJ_RS03915at 731.531 kb on - strand, within MMJJ_RS03915at 731.539 kb on + strand, within MMJJ_RS03915at 731.586 kb on + strand, within MMJJ_RS03915at 731.586 kb on + strand, within MMJJ_RS03915at 731.632 kb on - strand, within MMJJ_RS03915at 731.638 kb on - strand, within MMJJ_RS03915at 731.686 kb on - strand, within MMJJ_RS03915at 731.686 kb on - strand, within MMJJ_RS03915at 731.687 kb on + strand, within MMJJ_RS03915at 731.687 kb on + strand, within MMJJ_RS03915at 731.766 kb on - strandat 731.767 kb on + strandat 731.767 kb on + strandat 731.767 kb on + strandat 731.771 kb on - strandat 731.774 kb on - strandat 731.774 kb on - strandat 731.774 kb on - strandat 731.775 kb on + strandat 731.775 kb on + strandat 731.775 kb on + strandat 731.775 kb on + strandat 731.775 kb on + strandat 731.775 kb on + strandat 731.777 kb on - strandat 731.778 kb on + strandat 731.778 kb on + strandat 731.779 kb on - strandat 731.780 kb on + strandat 731.780 kb on + strandat 731.780 kb on + strandat 731.784 kb on - strandat 731.785 kb on + strandat 731.785 kb on + strandat 731.794 kb on + strandat 731.804 kb on - strandat 731.810 kb on + strandat 731.810 kb on + strandat 731.812 kb on - strandat 731.893 kb on - strandat 731.893 kb on - strandat 731.894 kb on + strandat 731.954 kb on - strand, within MMJJ_RS03920at 731.955 kb on + strand, within MMJJ_RS03920at 731.955 kb on + strand, within MMJJ_RS03920at 731.994 kb on + strand, within MMJJ_RS03920at 732.044 kb on - strand, within MMJJ_RS03920at 732.084 kb on + strand, within MMJJ_RS03920at 732.084 kb on + strand, within MMJJ_RS03920at 732.084 kb on + strand, within MMJJ_RS03920at 732.125 kb on - strand, within MMJJ_RS03920at 732.135 kb on + strand, within MMJJ_RS03920at 732.136 kb on - strand, within MMJJ_RS03920at 732.140 kb on - strand, within MMJJ_RS03920at 732.141 kb on + strand, within MMJJ_RS03920at 732.141 kb on + strand, within MMJJ_RS03920at 732.180 kb on - strand, within MMJJ_RS03920at 732.181 kb on + strand, within MMJJ_RS03920at 732.202 kb on - strand, within MMJJ_RS03920at 732.203 kb on + strand, within MMJJ_RS03920at 732.211 kb on - strand, within MMJJ_RS03920at 732.214 kb on - strand, within MMJJ_RS03920at 732.215 kb on + strand, within MMJJ_RS03920at 732.215 kb on + strand, within MMJJ_RS03920at 732.215 kb on + strand, within MMJJ_RS03920at 732.276 kb on + strand, within MMJJ_RS03920at 732.338 kb on - strand, within MMJJ_RS03920at 732.383 kb on - strand, within MMJJ_RS03920at 732.384 kb on + strand, within MMJJ_RS03920at 732.384 kb on + strand, within MMJJ_RS03920at 732.425 kb on - strand, within MMJJ_RS03920at 732.425 kb on - strand, within MMJJ_RS03920at 732.426 kb on + strand, within MMJJ_RS03920at 732.426 kb on + strand, within MMJJ_RS03920at 732.451 kb on - strand, within MMJJ_RS03920at 732.506 kb on + strand, within MMJJ_RS03920at 732.596 kb on - strand, within MMJJ_RS03920at 732.596 kb on - strand, within MMJJ_RS03920at 732.596 kb on - strand, within MMJJ_RS03920at 732.597 kb on + strand, within MMJJ_RS03920at 732.597 kb on + strand, within MMJJ_RS03920at 732.614 kb on - strand, within MMJJ_RS03920at 732.614 kb on - strand, within MMJJ_RS03920at 732.614 kb on - strand, within MMJJ_RS03920at 732.614 kb on - strand, within MMJJ_RS03920at 732.683 kb on - strand, within MMJJ_RS03920at 732.723 kb on + strand, within MMJJ_RS03920at 732.736 kb on - strand, within MMJJ_RS03920at 732.736 kb on - strand, within MMJJ_RS03920at 732.736 kb on - strand, within MMJJ_RS03920at 732.736 kb on - strand, within MMJJ_RS03920at 732.737 kb on + strand, within MMJJ_RS03920at 732.737 kb on + strand, within MMJJ_RS03920at 732.737 kb on + strand, within MMJJ_RS03920at 732.737 kb on + strand, within MMJJ_RS03920at 732.741 kb on + strand, within MMJJ_RS03920at 732.746 kb on + strand, within MMJJ_RS03920at 732.756 kb on + strand, within MMJJ_RS03920

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete no stress control
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730,169 + MMJJ_RS03905 0.72 +0.5
730,172 - MMJJ_RS03905 0.73 -0.6
730,173 + MMJJ_RS03905 0.73 +2.3
730,173 + MMJJ_RS03905 0.73 -2.6
730,360 - +1.0
730,360 - +1.9
730,386 - +0.7
730,387 + -3.8
730,472 - +0.0
730,484 - MMJJ_RS03910 0.10 -1.3
730,484 - MMJJ_RS03910 0.10 +1.0
730,512 - MMJJ_RS03910 0.14 -0.5
730,527 + MMJJ_RS03910 0.16 +1.7
730,528 - -0.6
730,529 + MMJJ_RS03910 0.16 +2.4
730,529 + MMJJ_RS03910 0.16 -0.6
730,529 + MMJJ_RS03910 0.16 -0.0
730,530 - MMJJ_RS03910 0.17 -1.5
730,530 - MMJJ_RS03910 0.17 +2.6
730,583 - MMJJ_RS03910 0.24 +1.3
730,588 + MMJJ_RS03910 0.25 -2.9
730,588 + MMJJ_RS03910 0.25 -0.6
730,588 + MMJJ_RS03910 0.25 -1.9
730,588 + MMJJ_RS03910 0.25 -0.4
730,593 - MMJJ_RS03910 0.26 +0.6
730,594 + MMJJ_RS03910 0.26 +1.5
730,594 + MMJJ_RS03910 0.26 -1.6
730,594 + MMJJ_RS03910 0.26 +1.9
730,618 - MMJJ_RS03910 0.29 -1.1
730,621 + MMJJ_RS03910 0.30 +2.9
730,670 - MMJJ_RS03910 0.37 +3.9
730,671 + MMJJ_RS03910 0.37 -1.1
730,671 + MMJJ_RS03910 0.37 +2.9
730,671 + MMJJ_RS03910 0.37 -1.2
730,764 - MMJJ_RS03910 0.50 +1.5
730,815 + MMJJ_RS03910 0.57 -1.9
730,818 - MMJJ_RS03910 0.58 +1.7
730,818 - MMJJ_RS03910 0.58 +1.0
730,818 - MMJJ_RS03910 0.58 -0.9
730,819 + MMJJ_RS03910 0.58 -4.3
730,827 - MMJJ_RS03910 0.59 -3.8
730,827 - MMJJ_RS03910 0.59 +3.1
730,827 - MMJJ_RS03910 0.59 +0.0
730,830 - MMJJ_RS03910 0.60 -0.4
730,830 - MMJJ_RS03910 0.60 +0.7
730,830 - MMJJ_RS03910 0.60 +2.4
730,830 - MMJJ_RS03910 0.60 -3.3
730,831 + MMJJ_RS03910 0.60 -2.6
730,831 + MMJJ_RS03910 0.60 -1.8
730,831 + MMJJ_RS03910 0.60 -0.0
730,833 + MMJJ_RS03910 0.60 +1.1
730,833 + MMJJ_RS03910 0.60 -1.3
730,833 + MMJJ_RS03910 0.60 +0.8
730,833 + MMJJ_RS03910 0.60 +0.1
730,853 - MMJJ_RS03910 0.63 -2.6
730,890 - MMJJ_RS03910 0.68 -1.0
730,891 + MMJJ_RS03910 0.68 +3.0
730,893 - MMJJ_RS03910 0.69 -1.8
730,893 - MMJJ_RS03910 0.69 +0.2
730,894 + MMJJ_RS03910 0.69 +3.6
730,894 + MMJJ_RS03910 0.69 +3.0
730,895 - MMJJ_RS03910 0.69 -0.6
730,895 - MMJJ_RS03910 0.69 -0.2
730,895 - MMJJ_RS03910 0.69 -0.9
730,897 - MMJJ_RS03910 0.69 -1.3
730,897 - MMJJ_RS03910 0.69 -3.1
730,897 - MMJJ_RS03910 0.69 -0.4
730,897 - MMJJ_RS03910 0.69 -2.8
730,897 - MMJJ_RS03910 0.69 +1.5
730,898 + MMJJ_RS03910 0.69 -0.4
730,898 + MMJJ_RS03910 0.69 -2.3
730,905 + MMJJ_RS03910 0.70 -2.8
730,949 - MMJJ_RS03910 0.77 -3.9
731,099 + +0.4
731,135 + -0.0
731,153 - +2.2
731,242 + MMJJ_RS03915 0.19 +1.0
731,267 + MMJJ_RS03915 0.23 +1.8
731,355 - MMJJ_RS03915 0.37 +0.0
731,531 - MMJJ_RS03915 0.63 -0.4
731,539 + MMJJ_RS03915 0.64 +1.0
731,586 + MMJJ_RS03915 0.72 -2.1
731,586 + MMJJ_RS03915 0.72 -0.1
731,632 - MMJJ_RS03915 0.78 +0.3
731,638 - MMJJ_RS03915 0.79 -1.1
731,686 - MMJJ_RS03915 0.87 -0.6
731,686 - MMJJ_RS03915 0.87 -0.4
731,687 + MMJJ_RS03915 0.87 -1.9
731,687 + MMJJ_RS03915 0.87 +0.3
731,766 - -2.3
731,767 + -1.2
731,767 + +1.9
731,767 + +2.0
731,771 - +2.7
731,774 - +1.1
731,774 - -0.0
731,774 - +1.3
731,775 + -0.7
731,775 + +0.1
731,775 + -0.4
731,775 + +0.5
731,775 + +1.1
731,775 + -1.5
731,777 - +0.6
731,778 + +1.0
731,778 + -0.3
731,779 - +1.6
731,780 + -1.5
731,780 + +1.8
731,780 + +1.5
731,784 - -0.4
731,785 + +2.4
731,785 + +1.1
731,794 + -0.0
731,804 - -2.9
731,810 + -3.0
731,810 + -2.1
731,812 - -0.0
731,893 - -0.5
731,893 - -4.3
731,894 + -0.8
731,954 - MMJJ_RS03920 0.14 -4.0
731,955 + MMJJ_RS03920 0.14 -0.7
731,955 + MMJJ_RS03920 0.14 -2.4
731,994 + MMJJ_RS03920 0.17 -4.3
732,044 - MMJJ_RS03920 0.21 -3.3
732,084 + MMJJ_RS03920 0.25 -1.3
732,084 + MMJJ_RS03920 0.25 -2.6
732,084 + MMJJ_RS03920 0.25 -3.5
732,125 - MMJJ_RS03920 0.28 -1.1
732,135 + MMJJ_RS03920 0.29 -3.3
732,136 - MMJJ_RS03920 0.29 -4.1
732,140 - MMJJ_RS03920 0.29 -0.6
732,141 + MMJJ_RS03920 0.29 -2.5
732,141 + MMJJ_RS03920 0.29 -3.5
732,180 - MMJJ_RS03920 0.33 -3.1
732,181 + MMJJ_RS03920 0.33 -1.7
732,202 - MMJJ_RS03920 0.34 -4.1
732,203 + MMJJ_RS03920 0.35 -1.3
732,211 - MMJJ_RS03920 0.35 -3.4
732,214 - MMJJ_RS03920 0.35 -3.0
732,215 + MMJJ_RS03920 0.36 -1.5
732,215 + MMJJ_RS03920 0.36 -2.9
732,215 + MMJJ_RS03920 0.36 -4.4
732,276 + MMJJ_RS03920 0.41 -2.0
732,338 - MMJJ_RS03920 0.46 -3.9
732,383 - MMJJ_RS03920 0.49 -0.0
732,384 + MMJJ_RS03920 0.49 -4.6
732,384 + MMJJ_RS03920 0.49 -4.3
732,425 - MMJJ_RS03920 0.53 -3.4
732,425 - MMJJ_RS03920 0.53 -2.0
732,426 + MMJJ_RS03920 0.53 -2.6
732,426 + MMJJ_RS03920 0.53 -3.9
732,451 - MMJJ_RS03920 0.55 +1.0
732,506 + MMJJ_RS03920 0.60 -2.0
732,596 - MMJJ_RS03920 0.67 -2.7
732,596 - MMJJ_RS03920 0.67 -2.8
732,596 - MMJJ_RS03920 0.67 -3.5
732,597 + MMJJ_RS03920 0.67 -3.2
732,597 + MMJJ_RS03920 0.67 -1.9
732,614 - MMJJ_RS03920 0.68 -3.0
732,614 - MMJJ_RS03920 0.68 -2.7
732,614 - MMJJ_RS03920 0.68 -0.0
732,614 - MMJJ_RS03920 0.68 -2.2
732,683 - MMJJ_RS03920 0.74 -4.4
732,723 + MMJJ_RS03920 0.77 -1.3
732,736 - MMJJ_RS03920 0.78 -1.0
732,736 - MMJJ_RS03920 0.78 -2.2
732,736 - MMJJ_RS03920 0.78 -2.7
732,736 - MMJJ_RS03920 0.78 -1.0
732,737 + MMJJ_RS03920 0.79 -2.4
732,737 + MMJJ_RS03920 0.79 -2.9
732,737 + MMJJ_RS03920 0.79 -1.0
732,737 + MMJJ_RS03920 0.79 -0.0
732,741 + MMJJ_RS03920 0.79 -0.3
732,746 + MMJJ_RS03920 0.79 -2.1
732,756 + MMJJ_RS03920 0.80 -2.0

Or see this region's nucleotide sequence