Experiment: McCas_formate_complete no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02085 and MMJJ_RS02090 are separated by 19 nucleotides MMJJ_RS02090 and MMJJ_RS02095 are separated by 64 nucleotides MMJJ_RS02095 and MMJJ_RS02100 are separated by 151 nucleotides MMJJ_RS02100 and MMJJ_RS02105 are separated by 59 nucleotides
MMJJ_RS02085: MMJJ_RS02085 - hypothetical protein, at 397,225 to 398,148
_RS02085
MMJJ_RS02090: MMJJ_RS02090 - tyramine--L-glutamate ligase, at 398,168 to 399,076
_RS02090
MMJJ_RS02095: MMJJ_RS02095 - DUF2124 family protein, at 399,141 to 399,623
_RS02095
MMJJ_RS02100: MMJJ_RS02100 - hypothetical protein, at 399,775 to 400,065
_RS02100
MMJJ_RS02105: MMJJ_RS02105 - right-handed parallel beta-helix repeat-containing protein, at 400,125 to 403,277
_RS02105
Position (kb) 399
400 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 398.184 kb on - strand at 398.261 kb on + strand, within MMJJ_RS02090 at 398.268 kb on - strand, within MMJJ_RS02090 at 398.374 kb on + strand, within MMJJ_RS02090 at 398.458 kb on + strand, within MMJJ_RS02090 at 398.463 kb on + strand, within MMJJ_RS02090 at 398.479 kb on + strand, within MMJJ_RS02090 at 398.527 kb on + strand, within MMJJ_RS02090 at 398.556 kb on + strand, within MMJJ_RS02090 at 398.667 kb on + strand, within MMJJ_RS02090 at 398.752 kb on - strand, within MMJJ_RS02090 at 398.753 kb on + strand at 398.795 kb on + strand, within MMJJ_RS02090 at 398.804 kb on + strand, within MMJJ_RS02090 at 398.845 kb on - strand, within MMJJ_RS02090 at 398.916 kb on - strand, within MMJJ_RS02090 at 399.100 kb on + strand at 399.109 kb on + strand at 399.113 kb on - strand at 399.113 kb on - strand at 399.152 kb on + strand at 399.192 kb on + strand, within MMJJ_RS02095 at 399.226 kb on - strand, within MMJJ_RS02095 at 399.288 kb on + strand, within MMJJ_RS02095 at 399.309 kb on - strand, within MMJJ_RS02095 at 399.310 kb on + strand, within MMJJ_RS02095 at 399.314 kb on - strand, within MMJJ_RS02095 at 399.314 kb on - strand, within MMJJ_RS02095 at 399.357 kb on + strand, within MMJJ_RS02095 at 399.357 kb on + strand, within MMJJ_RS02095 at 399.408 kb on + strand, within MMJJ_RS02095 at 399.475 kb on - strand, within MMJJ_RS02095 at 399.484 kb on - strand, within MMJJ_RS02095 at 399.489 kb on + strand, within MMJJ_RS02095 at 399.515 kb on + strand, within MMJJ_RS02095 at 399.515 kb on + strand, within MMJJ_RS02095 at 399.520 kb on - strand, within MMJJ_RS02095 at 399.520 kb on - strand, within MMJJ_RS02095 at 399.520 kb on - strand, within MMJJ_RS02095 at 399.521 kb on + strand, within MMJJ_RS02095 at 399.535 kb on - strand, within MMJJ_RS02095 at 399.576 kb on + strand at 399.580 kb on - strand at 399.584 kb on + strand at 399.584 kb on + strand at 399.625 kb on - strand at 399.654 kb on + strand at 399.711 kb on - strand at 399.711 kb on - strand at 399.711 kb on - strand at 399.711 kb on - strand at 399.711 kb on - strand at 399.712 kb on + strand at 399.716 kb on + strand at 399.716 kb on + strand at 399.737 kb on + strand at 399.741 kb on + strand at 399.741 kb on + strand at 399.742 kb on - strand at 399.742 kb on - strand at 399.742 kb on - strand at 399.743 kb on + strand at 399.804 kb on + strand, within MMJJ_RS02100 at 399.817 kb on - strand, within MMJJ_RS02100 at 399.817 kb on - strand, within MMJJ_RS02100 at 399.822 kb on - strand, within MMJJ_RS02100 at 399.822 kb on - strand, within MMJJ_RS02100 at 399.823 kb on + strand, within MMJJ_RS02100 at 399.823 kb on + strand, within MMJJ_RS02100 at 399.823 kb on + strand, within MMJJ_RS02100 at 399.824 kb on - strand, within MMJJ_RS02100 at 399.825 kb on + strand, within MMJJ_RS02100 at 399.825 kb on + strand, within MMJJ_RS02100 at 399.825 kb on + strand, within MMJJ_RS02100 at 399.825 kb on + strand, within MMJJ_RS02100 at 399.825 kb on + strand, within MMJJ_RS02100 at 399.912 kb on + strand, within MMJJ_RS02100 at 399.954 kb on + strand, within MMJJ_RS02100 at 399.961 kb on - strand, within MMJJ_RS02100 at 399.962 kb on + strand, within MMJJ_RS02100 at 399.962 kb on + strand, within MMJJ_RS02100 at 399.965 kb on + strand, within MMJJ_RS02100 at 399.965 kb on + strand, within MMJJ_RS02100 at 399.987 kb on - strand, within MMJJ_RS02100 at 399.993 kb on + strand, within MMJJ_RS02100 at 400.022 kb on + strand, within MMJJ_RS02100 at 400.022 kb on + strand, within MMJJ_RS02100 at 400.210 kb on + strand at 400.247 kb on - strand at 400.247 kb on - strand at 400.247 kb on - strand at 400.247 kb on - strand at 400.248 kb on + strand at 400.248 kb on + strand at 400.248 kb on + strand at 400.248 kb on + strand at 400.249 kb on - strand at 400.249 kb on - strand at 400.249 kb on - strand at 400.249 kb on - strand at 400.251 kb on - strand at 400.252 kb on + strand at 400.252 kb on + strand at 400.300 kb on + strand at 400.370 kb on + strand at 400.462 kb on + strand, within MMJJ_RS02105 at 400.499 kb on + strand, within MMJJ_RS02105 at 400.499 kb on + strand, within MMJJ_RS02105 at 400.500 kb on - strand, within MMJJ_RS02105 at 400.500 kb on - strand, within MMJJ_RS02105 at 400.500 kb on - strand, within MMJJ_RS02105 at 400.500 kb on - strand, within MMJJ_RS02105 at 400.500 kb on - strand, within MMJJ_RS02105 at 400.501 kb on + strand, within MMJJ_RS02105 at 400.501 kb on + strand, within MMJJ_RS02105 at 400.501 kb on + strand, within MMJJ_RS02105 at 400.501 kb on + strand, within MMJJ_RS02105 at 400.501 kb on + strand, within MMJJ_RS02105 at 400.503 kb on + strand, within MMJJ_RS02105 at 400.503 kb on + strand, within MMJJ_RS02105 at 400.503 kb on + strand, within MMJJ_RS02105 at 400.503 kb on + strand, within MMJJ_RS02105 at 400.503 kb on + strand, within MMJJ_RS02105 at 400.533 kb on - strand, within MMJJ_RS02105
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete no stress control remove 398,184 - +0.3 398,261 + MMJJ_RS02090 0.10 -1.7 398,268 - MMJJ_RS02090 0.11 -1.4 398,374 + MMJJ_RS02090 0.23 -1.4 398,458 + MMJJ_RS02090 0.32 +0.9 398,463 + MMJJ_RS02090 0.32 +0.9 398,479 + MMJJ_RS02090 0.34 -2.4 398,527 + MMJJ_RS02090 0.39 -0.1 398,556 + MMJJ_RS02090 0.43 -0.1 398,667 + MMJJ_RS02090 0.55 -1.1 398,752 - MMJJ_RS02090 0.64 -1.7 398,753 + -0.7 398,795 + MMJJ_RS02090 0.69 -0.1 398,804 + MMJJ_RS02090 0.70 -2.1 398,845 - MMJJ_RS02090 0.74 -2.1 398,916 - MMJJ_RS02090 0.82 +1.7 399,100 + +1.4 399,109 + -0.7 399,113 - +1.3 399,113 - +1.0 399,152 + -1.4 399,192 + MMJJ_RS02095 0.11 -2.4 399,226 - MMJJ_RS02095 0.18 -2.5 399,288 + MMJJ_RS02095 0.30 +0.4 399,309 - MMJJ_RS02095 0.35 -3.7 399,310 + MMJJ_RS02095 0.35 -5.7 399,314 - MMJJ_RS02095 0.36 -4.2 399,314 - MMJJ_RS02095 0.36 +1.9 399,357 + MMJJ_RS02095 0.45 -0.6 399,357 + MMJJ_RS02095 0.45 -1.2 399,408 + MMJJ_RS02095 0.55 -2.0 399,475 - MMJJ_RS02095 0.69 -0.1 399,484 - MMJJ_RS02095 0.71 +0.8 399,489 + MMJJ_RS02095 0.72 +0.3 399,515 + MMJJ_RS02095 0.77 -0.7 399,515 + MMJJ_RS02095 0.77 +1.9 399,520 - MMJJ_RS02095 0.78 -1.7 399,520 - MMJJ_RS02095 0.78 +3.8 399,520 - MMJJ_RS02095 0.78 +3.2 399,521 + MMJJ_RS02095 0.79 +0.1 399,535 - MMJJ_RS02095 0.82 -2.5 399,576 + -2.6 399,580 - -1.9 399,584 + +0.3 399,584 + +0.8 399,625 - -3.8 399,654 + -1.0 399,711 - +1.1 399,711 - -3.1 399,711 - +0.1 399,711 - -0.3 399,711 - -3.5 399,712 + +1.5 399,716 + +0.0 399,716 + -0.7 399,737 + +0.7 399,741 + +1.8 399,741 + -1.7 399,742 - -0.6 399,742 - +0.4 399,742 - -0.0 399,743 + -2.1 399,804 + MMJJ_RS02100 0.10 +2.3 399,817 - MMJJ_RS02100 0.14 -1.6 399,817 - MMJJ_RS02100 0.14 +0.8 399,822 - MMJJ_RS02100 0.16 +1.2 399,822 - MMJJ_RS02100 0.16 +3.0 399,823 + MMJJ_RS02100 0.16 -1.3 399,823 + MMJJ_RS02100 0.16 +2.9 399,823 + MMJJ_RS02100 0.16 +1.3 399,824 - MMJJ_RS02100 0.17 +1.0 399,825 + MMJJ_RS02100 0.17 +0.1 399,825 + MMJJ_RS02100 0.17 -0.1 399,825 + MMJJ_RS02100 0.17 +0.1 399,825 + MMJJ_RS02100 0.17 +2.0 399,825 + MMJJ_RS02100 0.17 -0.7 399,912 + MMJJ_RS02100 0.47 -1.7 399,954 + MMJJ_RS02100 0.62 -0.3 399,961 - MMJJ_RS02100 0.64 +0.3 399,962 + MMJJ_RS02100 0.64 +1.5 399,962 + MMJJ_RS02100 0.64 +1.7 399,965 + MMJJ_RS02100 0.65 -0.5 399,965 + MMJJ_RS02100 0.65 +2.2 399,987 - MMJJ_RS02100 0.73 +1.3 399,993 + MMJJ_RS02100 0.75 +0.5 400,022 + MMJJ_RS02100 0.85 -0.4 400,022 + MMJJ_RS02100 0.85 -1.1 400,210 + +1.0 400,247 - +0.5 400,247 - +1.1 400,247 - +1.3 400,247 - +4.1 400,248 + -2.9 400,248 + +0.2 400,248 + +1.1 400,248 + -3.5 400,249 - -1.0 400,249 - +0.8 400,249 - -2.2 400,249 - +1.3 400,251 - +1.0 400,252 + -0.7 400,252 + -0.8 400,300 + +0.5 400,370 + -0.7 400,462 + MMJJ_RS02105 0.11 -1.0 400,499 + MMJJ_RS02105 0.12 +0.5 400,499 + MMJJ_RS02105 0.12 -0.1 400,500 - MMJJ_RS02105 0.12 -0.3 400,500 - MMJJ_RS02105 0.12 +1.3 400,500 - MMJJ_RS02105 0.12 +3.4 400,500 - MMJJ_RS02105 0.12 +4.0 400,500 - MMJJ_RS02105 0.12 +1.4 400,501 + MMJJ_RS02105 0.12 +1.3 400,501 + MMJJ_RS02105 0.12 -0.2 400,501 + MMJJ_RS02105 0.12 -0.1 400,501 + MMJJ_RS02105 0.12 -2.6 400,501 + MMJJ_RS02105 0.12 -2.4 400,503 + MMJJ_RS02105 0.12 -3.5 400,503 + MMJJ_RS02105 0.12 +0.6 400,503 + MMJJ_RS02105 0.12 -0.8 400,503 + MMJJ_RS02105 0.12 +1.1 400,503 + MMJJ_RS02105 0.12 -1.0 400,533 - MMJJ_RS02105 0.13 +2.8
Or see this region's nucleotide sequence