Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06430

Experiment: McCas_formate_complete sodium bromide 125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete sodium bromide 125 mM
1,189,011	+				-0.8
1,189,041	-				-0.1
1,189,050	+				-3.0
1,189,065	-				-0.1
1,189,074	+				+3.3
1,189,099	-				-3.6
1,189,104	+				-0.7
1,189,115	-				+2.5
1,189,115	-				+2.0
1,189,116	+				+1.8
1,189,154	-				+2.3
1,189,158	-				-1.3
1,189,240	+		MMJJ_RS06430	0.17	+4.7
1,189,370	-		MMJJ_RS06430	0.39	+0.3
1,189,371	+		MMJJ_RS06430	0.39	+4.0
1,189,371	+		MMJJ_RS06430	0.39	+2.7
1,189,371	+		MMJJ_RS06430	0.39	-0.8
1,189,375	+		MMJJ_RS06430	0.40	-1.9
1,189,375	+		MMJJ_RS06430	0.40	-2.7
1,189,388	-		MMJJ_RS06430	0.42	+1.4
1,189,388	-		MMJJ_RS06430	0.42	+2.7
1,189,391	-		MMJJ_RS06430	0.43	-1.9
1,189,446	-		MMJJ_RS06430	0.52	+3.3
1,189,447	+		MMJJ_RS06430	0.52	+0.1
1,189,458	+		MMJJ_RS06430	0.54	-1.2
1,189,460	+		MMJJ_RS06430	0.54	+3.8
1,189,493	+		MMJJ_RS06430	0.60	+2.5
1,189,493	+		MMJJ_RS06430	0.60	+0.9
1,189,501	+		MMJJ_RS06430	0.61	+1.0
1,189,557	+		MMJJ_RS06430	0.71	+0.5
1,189,558	-		MMJJ_RS06430	0.71	-0.5
1,189,558	-		MMJJ_RS06430	0.71	-3.5
1,189,558	-		MMJJ_RS06430	0.71	-0.9
1,189,559	+		MMJJ_RS06430	0.71	-1.6
1,189,559	+		MMJJ_RS06430	0.71	-0.1
1,189,599	+		MMJJ_RS06430	0.78	-1.9
1,189,618	-		MMJJ_RS06430	0.81	+1.3
1,189,671	-				-1.6
1,189,671	-				-1.1
1,189,671	-				+0.6
1,189,671	-				-1.9
1,189,671	-				+1.5
1,189,672	+				-2.5
1,189,672	+				+2.1
1,189,672	+				-1.1
1,189,672	+				+0.1
1,189,672	+				+0.5
1,189,672	+				+0.5
1,189,672	+				-0.6
1,189,672	+				-0.6
1,189,672	+				+0.4
1,189,672	+				-2.8
1,189,672	+				+2.2
1,189,675	-				-1.0
1,189,675	-				-1.3
1,189,700	+				+1.3
1,189,700	+				+0.3
1,189,700	+				+0.8
1,189,700	+				+1.5
1,189,704	-				+2.3
1,189,704	-				+0.9
1,189,704	-				-3.7
1,189,704	-				+1.8
1,189,704	-				+0.5
1,189,705	+				+0.8
1,189,705	+				-2.1
1,189,727	-				-0.3
1,189,728	+				+1.2
1,189,728	+				+1.6
1,189,748	+				+2.5
1,189,753	-				+0.5
1,189,780	-				-1.1
1,189,781	+				+2.8
1,189,929	-				-0.3
1,189,930	+				-3.2
1,189,960	-				+3.4
1,189,961	+				+3.0
1,189,982	-				-2.6
1,189,982	-				+1.9
1,189,982	-				+1.3
1,189,982	-				-1.5
1,189,983	+				+0.1
1,189,983	+				-1.1
1,189,983	+				+0.5
1,189,983	+				+0.7
1,189,983	+				-2.2
1,189,983	+				-2.3
1,189,984	-				-0.3
1,189,984	-				+2.0
1,189,984	-				-1.3
1,189,984	-				+0.2
1,189,984	-				-1.3
1,189,984	-				-0.5
1,189,985	+				-1.3
1,189,985	+				-0.1
1,189,985	+				+1.5
1,189,985	+				+0.3
1,189,985	+				+1.2
1,189,985	+				-1.7
1,189,985	+				-2.6
1,189,989	-				+2.3
1,189,989	-				-3.7
1,189,989	-				-2.9
1,189,990	+				+1.9
1,189,990	+				+3.6
1,190,012	-				+1.5
1,190,013	+				-1.1
1,190,025	-				+2.9
1,190,026	+				-2.2
1,190,036	+				-1.8
1,190,064	+		MMJJ_RS06440	0.14	+2.0
1,190,067	-		MMJJ_RS06440	0.15	-0.0
1,190,068	+		MMJJ_RS06440	0.16	+0.2
1,190,068	+		MMJJ_RS06440	0.16	-0.5
1,190,068	+		MMJJ_RS06440	0.16	-0.8
1,190,070	-		MMJJ_RS06440	0.16	+1.5
1,190,070	-		MMJJ_RS06440	0.16	-3.2
1,190,088	-		MMJJ_RS06440	0.22	+1.9
1,190,089	+		MMJJ_RS06440	0.22	+2.9
1,190,094	-		MMJJ_RS06440	0.24	-0.4
1,190,094	-		MMJJ_RS06440	0.24	+0.9
1,190,094	-		MMJJ_RS06440	0.24	-0.1
1,190,094	-		MMJJ_RS06440	0.24	+3.9
1,190,095	+		MMJJ_RS06440	0.24	-0.3
1,190,095	+		MMJJ_RS06440	0.24	+1.4
1,190,117	+		MMJJ_RS06440	0.31	+2.3
1,190,124	-		MMJJ_RS06440	0.33	+1.2
1,190,146	-		MMJJ_RS06440	0.40	+1.8
1,190,147	+		MMJJ_RS06440	0.41	+2.8
1,190,166	-		MMJJ_RS06440	0.47	+0.6
1,190,176	+		MMJJ_RS06440	0.50	-0.1
1,190,194	-		MMJJ_RS06440	0.55	-2.3
1,190,195	+		MMJJ_RS06440	0.56	-0.9
1,190,195	+		MMJJ_RS06440	0.56	-1.8
1,190,260	+		MMJJ_RS06440	0.76	+1.8
1,190,260	+		MMJJ_RS06440	0.76	+1.5
1,190,269	+		MMJJ_RS06440	0.79	-4.5
1,190,292	+		MMJJ_RS06440	0.86	-3.2
1,190,292	+		MMJJ_RS06440	0.86	+2.1
1,190,303	+		MMJJ_RS06440	0.90	+0.6
1,190,350	-				-1.8
1,190,356	+				+0.2
1,190,359	+				-1.9
1,190,360	-				-1.5
1,190,360	-				-1.7
1,190,360	-				+2.2
1,190,360	-				+3.1
1,190,360	-				-0.9
1,190,360	-				+2.3
1,190,361	+				-0.4
1,190,361	+				+1.2
1,190,361	+				+3.7
1,190,453	+		MMJJ_RS06445	0.12	-2.8
1,190,453	+		MMJJ_RS06445	0.12	-3.3
1,190,461	-		MMJJ_RS06445	0.13	+0.6
1,190,461	-		MMJJ_RS06445	0.13	+2.4
1,190,471	-		MMJJ_RS06445	0.14	-0.8
1,190,471	-		MMJJ_RS06445	0.14	-1.1
1,190,472	+		MMJJ_RS06445	0.14	+0.4
1,190,472	+		MMJJ_RS06445	0.14	+2.5
1,190,492	+		MMJJ_RS06445	0.16	+2.1
1,190,518	-		MMJJ_RS06445	0.20	-3.1
1,190,591	-		MMJJ_RS06445	0.28	-1.4
1,190,591	-		MMJJ_RS06445	0.28	+3.7
1,190,591	-		MMJJ_RS06445	0.28	-0.9
1,190,591	-		MMJJ_RS06445	0.28	-1.8
1,190,591	-		MMJJ_RS06445	0.28	-3.0
1,190,591	-		MMJJ_RS06445	0.28	-0.1
1,190,592	+		MMJJ_RS06445	0.29	+1.9
1,190,592	+		MMJJ_RS06445	0.29	+0.8
1,190,592	+		MMJJ_RS06445	0.29	+1.4
1,190,592	+		MMJJ_RS06445	0.29	+0.2
1,190,596	-		MMJJ_RS06445	0.29	+1.1
1,190,597	+		MMJJ_RS06445	0.29	+1.5
1,190,597	+		MMJJ_RS06445	0.29	-2.6
1,190,597	+		MMJJ_RS06445	0.29	+0.2
1,190,609	-		MMJJ_RS06445	0.31	-0.9
1,190,610	+		MMJJ_RS06445	0.31	+2.0
1,190,610	+		MMJJ_RS06445	0.31	+1.1
1,190,615	+		MMJJ_RS06445	0.31	+1.6
1,190,623	-		MMJJ_RS06445	0.32	+0.9
1,190,623	-		MMJJ_RS06445	0.32	-1.0
1,190,623	-		MMJJ_RS06445	0.32	+0.7
1,190,624	+		MMJJ_RS06445	0.32	-1.0
1,190,624	+		MMJJ_RS06445	0.32	-2.9
1,190,624	+		MMJJ_RS06445	0.32	-1.3
1,190,633	-		MMJJ_RS06445	0.34	+1.5
1,190,633	-		MMJJ_RS06445	0.34	+1.4
1,190,634	+		MMJJ_RS06445	0.34	-2.3
1,190,634	+		MMJJ_RS06445	0.34	+2.9
1,190,662	-		MMJJ_RS06445	0.37	+2.7
1,190,662	-		MMJJ_RS06445	0.37	+1.9
1,190,662	-		MMJJ_RS06445	0.37	-1.3
1,190,662	-		MMJJ_RS06445	0.37	-0.0
1,190,662	-		MMJJ_RS06445	0.37	-2.1
1,190,662	-		MMJJ_RS06445	0.37	+0.7
1,190,662	-		MMJJ_RS06445	0.37	+2.4
1,190,663	+		MMJJ_RS06445	0.37	+0.4
1,190,663	+		MMJJ_RS06445	0.37	-0.4
1,190,663	+		MMJJ_RS06445	0.37	-1.5
1,190,663	+		MMJJ_RS06445	0.37	-0.5
1,190,664	-		MMJJ_RS06445	0.37	-1.8
1,190,665	+		MMJJ_RS06445	0.37	-1.0
1,190,665	+		MMJJ_RS06445	0.37	+0.4
1,190,665	+		MMJJ_RS06445	0.37	+1.0
1,190,713	-		MMJJ_RS06445	0.43	+1.5
1,190,723	-		MMJJ_RS06445	0.45	-1.4
1,190,723	-		MMJJ_RS06445	0.45	+1.6
1,190,723	-		MMJJ_RS06445	0.45	-0.8
1,190,723	-		MMJJ_RS06445	0.45	-1.0
1,190,723	-		MMJJ_RS06445	0.45	-1.3
1,190,723	-		MMJJ_RS06445	0.45	+2.2
1,190,723	-		MMJJ_RS06445	0.45	-1.5
1,190,723	-		MMJJ_RS06445	0.45	+2.6
1,190,724	+		MMJJ_RS06445	0.45	+2.9
1,190,724	+		MMJJ_RS06445	0.45	+0.4
1,190,724	+		MMJJ_RS06445	0.45	+0.5
1,190,727	-		MMJJ_RS06445	0.45	+2.3
1,190,727	-		MMJJ_RS06445	0.45	-3.0
1,190,727	-		MMJJ_RS06445	0.45	-0.5
1,190,727	-		MMJJ_RS06445	0.45	-2.4
1,190,727	-		MMJJ_RS06445	0.45	-0.8
1,190,728	+		MMJJ_RS06445	0.45	-1.2