Experiment: McCas_formate_complete sodium bromide 125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04540 and MMJJ_RS04545 are separated by 112 nucleotides MMJJ_RS04545 and MMJJ_RS04550 are separated by 1 nucleotides MMJJ_RS04550 and MMJJ_RS04555 are separated by 0 nucleotides
MMJJ_RS04540: MMJJ_RS04540 - site-2 protease family protein, at 847,122 to 848,249
_RS04540
MMJJ_RS04545: MMJJ_RS04545 - PadR family transcriptional regulator, at 848,362 to 848,820
_RS04545
MMJJ_RS04550: MMJJ_RS04550 - ATP-binding cassette domain-containing protein, at 848,822 to 849,790
_RS04550
MMJJ_RS04555: MMJJ_RS04555 - MATE family efflux transporter, at 849,791 to 851,173
_RS04555
Position (kb) 848
849
850 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 847.872 kb on + strand, within MMJJ_RS04540 at 847.884 kb on - strand, within MMJJ_RS04540 at 847.885 kb on + strand, within MMJJ_RS04540 at 847.885 kb on + strand, within MMJJ_RS04540 at 847.916 kb on - strand, within MMJJ_RS04540 at 847.917 kb on + strand, within MMJJ_RS04540 at 847.994 kb on - strand, within MMJJ_RS04540 at 847.995 kb on + strand, within MMJJ_RS04540 at 848.064 kb on - strand, within MMJJ_RS04540 at 848.065 kb on + strand, within MMJJ_RS04540 at 848.066 kb on - strand, within MMJJ_RS04540 at 848.067 kb on + strand, within MMJJ_RS04540 at 848.067 kb on + strand, within MMJJ_RS04540 at 848.089 kb on + strand, within MMJJ_RS04540 at 848.092 kb on + strand, within MMJJ_RS04540 at 848.137 kb on - strand at 848.185 kb on + strand at 848.192 kb on + strand at 848.211 kb on - strand at 848.241 kb on + strand at 848.267 kb on - strand at 848.267 kb on - strand at 848.267 kb on - strand at 848.272 kb on + strand at 848.272 kb on + strand at 848.282 kb on - strand at 848.282 kb on - strand at 848.304 kb on + strand at 848.308 kb on + strand at 848.316 kb on + strand at 848.346 kb on - strand at 848.360 kb on - strand at 848.374 kb on + strand at 848.374 kb on + strand at 848.382 kb on + strand at 848.405 kb on - strand at 848.606 kb on - strand, within MMJJ_RS04545 at 848.623 kb on + strand, within MMJJ_RS04545 at 848.662 kb on - strand, within MMJJ_RS04545 at 848.708 kb on - strand, within MMJJ_RS04545 at 848.819 kb on + strand at 848.882 kb on + strand at 848.893 kb on - strand at 848.958 kb on - strand, within MMJJ_RS04550 at 848.962 kb on - strand, within MMJJ_RS04550 at 848.964 kb on - strand, within MMJJ_RS04550 at 848.964 kb on - strand, within MMJJ_RS04550 at 848.965 kb on + strand, within MMJJ_RS04550 at 848.965 kb on + strand, within MMJJ_RS04550 at 848.968 kb on - strand, within MMJJ_RS04550 at 848.968 kb on - strand, within MMJJ_RS04550 at 848.969 kb on + strand, within MMJJ_RS04550 at 848.995 kb on - strand, within MMJJ_RS04550 at 849.026 kb on + strand, within MMJJ_RS04550 at 849.076 kb on - strand, within MMJJ_RS04550 at 849.131 kb on - strand, within MMJJ_RS04550 at 849.137 kb on - strand, within MMJJ_RS04550 at 849.138 kb on + strand, within MMJJ_RS04550 at 849.138 kb on + strand, within MMJJ_RS04550 at 849.187 kb on + strand, within MMJJ_RS04550 at 849.203 kb on + strand, within MMJJ_RS04550 at 849.209 kb on + strand, within MMJJ_RS04550 at 849.209 kb on + strand, within MMJJ_RS04550 at 849.267 kb on - strand, within MMJJ_RS04550 at 849.267 kb on - strand, within MMJJ_RS04550 at 849.267 kb on - strand, within MMJJ_RS04550 at 849.268 kb on + strand, within MMJJ_RS04550 at 849.268 kb on + strand, within MMJJ_RS04550 at 849.348 kb on + strand, within MMJJ_RS04550 at 849.348 kb on + strand, within MMJJ_RS04550 at 849.352 kb on - strand, within MMJJ_RS04550 at 849.353 kb on + strand, within MMJJ_RS04550 at 849.384 kb on - strand, within MMJJ_RS04550 at 849.390 kb on - strand, within MMJJ_RS04550 at 849.391 kb on + strand, within MMJJ_RS04550 at 849.391 kb on + strand, within MMJJ_RS04550 at 849.402 kb on + strand, within MMJJ_RS04550 at 849.586 kb on + strand, within MMJJ_RS04550 at 849.590 kb on - strand, within MMJJ_RS04550 at 849.590 kb on - strand, within MMJJ_RS04550 at 849.591 kb on + strand, within MMJJ_RS04550 at 849.675 kb on + strand, within MMJJ_RS04550 at 849.677 kb on + strand, within MMJJ_RS04550 at 849.891 kb on - strand at 849.891 kb on - strand at 849.892 kb on + strand at 849.892 kb on + strand at 849.892 kb on + strand at 849.893 kb on - strand at 849.893 kb on - strand at 849.894 kb on + strand at 849.894 kb on + strand at 849.894 kb on + strand at 849.894 kb on + strand at 849.894 kb on + strand at 849.894 kb on + strand at 849.894 kb on + strand at 849.894 kb on + strand at 849.894 kb on + strand at 849.895 kb on - strand at 849.895 kb on - strand at 849.896 kb on + strand at 849.900 kb on - strand at 849.901 kb on + strand at 849.957 kb on - strand, within MMJJ_RS04555 at 850.002 kb on - strand, within MMJJ_RS04555 at 850.002 kb on - strand, within MMJJ_RS04555 at 850.003 kb on + strand, within MMJJ_RS04555 at 850.003 kb on + strand, within MMJJ_RS04555 at 850.006 kb on - strand, within MMJJ_RS04555 at 850.006 kb on - strand, within MMJJ_RS04555 at 850.066 kb on - strand, within MMJJ_RS04555 at 850.066 kb on - strand, within MMJJ_RS04555 at 850.066 kb on - strand, within MMJJ_RS04555 at 850.067 kb on + strand, within MMJJ_RS04555 at 850.067 kb on + strand, within MMJJ_RS04555 at 850.089 kb on - strand, within MMJJ_RS04555 at 850.089 kb on - strand, within MMJJ_RS04555 at 850.089 kb on - strand, within MMJJ_RS04555 at 850.175 kb on + strand, within MMJJ_RS04555 at 850.183 kb on - strand, within MMJJ_RS04555 at 850.184 kb on + strand, within MMJJ_RS04555 at 850.197 kb on + strand, within MMJJ_RS04555 at 850.292 kb on - strand, within MMJJ_RS04555 at 850.293 kb on + strand, within MMJJ_RS04555 at 850.293 kb on + strand, within MMJJ_RS04555 at 850.344 kb on - strand, within MMJJ_RS04555 at 850.344 kb on - strand, within MMJJ_RS04555 at 850.344 kb on - strand, within MMJJ_RS04555 at 850.345 kb on + strand, within MMJJ_RS04555 at 850.346 kb on - strand, within MMJJ_RS04555 at 850.346 kb on - strand, within MMJJ_RS04555 at 850.346 kb on - strand, within MMJJ_RS04555 at 850.346 kb on - strand, within MMJJ_RS04555 at 850.347 kb on + strand, within MMJJ_RS04555 at 850.347 kb on + strand, within MMJJ_RS04555 at 850.347 kb on + strand, within MMJJ_RS04555 at 850.347 kb on + strand, within MMJJ_RS04555 at 850.347 kb on + strand, within MMJJ_RS04555 at 850.350 kb on - strand, within MMJJ_RS04555 at 850.351 kb on + strand, within MMJJ_RS04555 at 850.351 kb on + strand, within MMJJ_RS04555 at 850.351 kb on + strand, within MMJJ_RS04555 at 850.358 kb on + strand, within MMJJ_RS04555 at 850.390 kb on + strand, within MMJJ_RS04555 at 850.436 kb on + strand, within MMJJ_RS04555 at 850.489 kb on - strand, within MMJJ_RS04555 at 850.498 kb on + strand, within MMJJ_RS04555 at 850.566 kb on - strand, within MMJJ_RS04555 at 850.638 kb on - strand, within MMJJ_RS04555 at 850.638 kb on - strand, within MMJJ_RS04555 at 850.638 kb on - strand, within MMJJ_RS04555 at 850.639 kb on + strand, within MMJJ_RS04555 at 850.639 kb on + strand, within MMJJ_RS04555 at 850.643 kb on + strand, within MMJJ_RS04555 at 850.745 kb on - strand, within MMJJ_RS04555 at 850.780 kb on + strand, within MMJJ_RS04555
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete sodium bromide 125 mM remove 847,872 + MMJJ_RS04540 0.66 -1.3 847,884 - MMJJ_RS04540 0.68 +3.2 847,885 + MMJJ_RS04540 0.68 +1.1 847,885 + MMJJ_RS04540 0.68 -1.5 847,916 - MMJJ_RS04540 0.70 -2.2 847,917 + MMJJ_RS04540 0.70 +3.2 847,994 - MMJJ_RS04540 0.77 +0.8 847,995 + MMJJ_RS04540 0.77 -0.7 848,064 - MMJJ_RS04540 0.84 +0.4 848,065 + MMJJ_RS04540 0.84 -1.2 848,066 - MMJJ_RS04540 0.84 +0.4 848,067 + MMJJ_RS04540 0.84 -3.0 848,067 + MMJJ_RS04540 0.84 -2.4 848,089 + MMJJ_RS04540 0.86 +2.6 848,092 + MMJJ_RS04540 0.86 -2.5 848,137 - -1.0 848,185 + +0.9 848,192 + -0.5 848,211 - +2.9 848,241 + -0.6 848,267 - +1.1 848,267 - -3.2 848,267 - -3.8 848,272 + +0.9 848,272 + -0.9 848,282 - -1.6 848,282 - -0.2 848,304 + +2.7 848,308 + -3.4 848,316 + +1.4 848,346 - +1.5 848,360 - +2.4 848,374 + +0.3 848,374 + +0.6 848,382 + +0.6 848,405 - +1.5 848,606 - MMJJ_RS04545 0.53 +0.6 848,623 + MMJJ_RS04545 0.57 -2.9 848,662 - MMJJ_RS04545 0.65 -1.7 848,708 - MMJJ_RS04545 0.75 +2.6 848,819 + +0.6 848,882 + +2.5 848,893 - +0.2 848,958 - MMJJ_RS04550 0.14 -0.1 848,962 - MMJJ_RS04550 0.14 +0.9 848,964 - MMJJ_RS04550 0.15 +1.1 848,964 - MMJJ_RS04550 0.15 -0.2 848,965 + MMJJ_RS04550 0.15 -0.1 848,965 + MMJJ_RS04550 0.15 -3.3 848,968 - MMJJ_RS04550 0.15 -0.3 848,968 - MMJJ_RS04550 0.15 -1.8 848,969 + MMJJ_RS04550 0.15 -2.8 848,995 - MMJJ_RS04550 0.18 +0.5 849,026 + MMJJ_RS04550 0.21 +2.0 849,076 - MMJJ_RS04550 0.26 +1.4 849,131 - MMJJ_RS04550 0.32 +0.6 849,137 - MMJJ_RS04550 0.33 +1.8 849,138 + MMJJ_RS04550 0.33 +2.2 849,138 + MMJJ_RS04550 0.33 -3.0 849,187 + MMJJ_RS04550 0.38 -2.0 849,203 + MMJJ_RS04550 0.39 -0.5 849,209 + MMJJ_RS04550 0.40 -1.8 849,209 + MMJJ_RS04550 0.40 -0.1 849,267 - MMJJ_RS04550 0.46 +1.6 849,267 - MMJJ_RS04550 0.46 +2.4 849,267 - MMJJ_RS04550 0.46 -0.1 849,268 + MMJJ_RS04550 0.46 -0.1 849,268 + MMJJ_RS04550 0.46 -0.8 849,348 + MMJJ_RS04550 0.54 +3.5 849,348 + MMJJ_RS04550 0.54 +2.1 849,352 - MMJJ_RS04550 0.55 +2.8 849,353 + MMJJ_RS04550 0.55 -1.1 849,384 - MMJJ_RS04550 0.58 -2.0 849,390 - MMJJ_RS04550 0.59 +2.4 849,391 + MMJJ_RS04550 0.59 +2.7 849,391 + MMJJ_RS04550 0.59 +2.4 849,402 + MMJJ_RS04550 0.60 -0.5 849,586 + MMJJ_RS04550 0.79 +2.7 849,590 - MMJJ_RS04550 0.79 -0.9 849,590 - MMJJ_RS04550 0.79 +1.1 849,591 + MMJJ_RS04550 0.79 -0.4 849,675 + MMJJ_RS04550 0.88 -0.5 849,677 + MMJJ_RS04550 0.88 +0.7 849,891 - +1.1 849,891 - -0.5 849,892 + +0.4 849,892 + +0.2 849,892 + +1.2 849,893 - +2.5 849,893 - +1.2 849,894 + -1.1 849,894 + +3.1 849,894 + -1.1 849,894 + -0.1 849,894 + -1.7 849,894 + -0.3 849,894 + -3.5 849,894 + +1.3 849,894 + -1.2 849,895 - -2.0 849,895 - -2.5 849,896 + -2.9 849,900 - -0.9 849,901 + +0.5 849,957 - MMJJ_RS04555 0.12 +2.7 850,002 - MMJJ_RS04555 0.15 +0.4 850,002 - MMJJ_RS04555 0.15 -1.4 850,003 + MMJJ_RS04555 0.15 +2.0 850,003 + MMJJ_RS04555 0.15 +0.6 850,006 - MMJJ_RS04555 0.16 +0.9 850,006 - MMJJ_RS04555 0.16 -0.4 850,066 - MMJJ_RS04555 0.20 -1.8 850,066 - MMJJ_RS04555 0.20 -2.4 850,066 - MMJJ_RS04555 0.20 -0.4 850,067 + MMJJ_RS04555 0.20 +1.6 850,067 + MMJJ_RS04555 0.20 -1.1 850,089 - MMJJ_RS04555 0.22 +1.9 850,089 - MMJJ_RS04555 0.22 -2.1 850,089 - MMJJ_RS04555 0.22 -1.3 850,175 + MMJJ_RS04555 0.28 +0.5 850,183 - MMJJ_RS04555 0.28 +0.9 850,184 + MMJJ_RS04555 0.28 -1.0 850,197 + MMJJ_RS04555 0.29 +2.3 850,292 - MMJJ_RS04555 0.36 -2.8 850,293 + MMJJ_RS04555 0.36 -0.2 850,293 + MMJJ_RS04555 0.36 +1.0 850,344 - MMJJ_RS04555 0.40 -1.1 850,344 - MMJJ_RS04555 0.40 +1.5 850,344 - MMJJ_RS04555 0.40 -0.7 850,345 + MMJJ_RS04555 0.40 +1.0 850,346 - MMJJ_RS04555 0.40 +3.6 850,346 - MMJJ_RS04555 0.40 +1.4 850,346 - MMJJ_RS04555 0.40 +3.0 850,346 - MMJJ_RS04555 0.40 +1.9 850,347 + MMJJ_RS04555 0.40 -3.4 850,347 + MMJJ_RS04555 0.40 +1.1 850,347 + MMJJ_RS04555 0.40 -0.1 850,347 + MMJJ_RS04555 0.40 -2.5 850,347 + MMJJ_RS04555 0.40 -0.4 850,350 - MMJJ_RS04555 0.40 +1.8 850,351 + MMJJ_RS04555 0.40 -4.0 850,351 + MMJJ_RS04555 0.40 -3.2 850,351 + MMJJ_RS04555 0.40 +0.6 850,358 + MMJJ_RS04555 0.41 -2.8 850,390 + MMJJ_RS04555 0.43 -0.7 850,436 + MMJJ_RS04555 0.47 +3.3 850,489 - MMJJ_RS04555 0.50 +2.1 850,498 + MMJJ_RS04555 0.51 -2.6 850,566 - MMJJ_RS04555 0.56 +2.2 850,638 - MMJJ_RS04555 0.61 +1.5 850,638 - MMJJ_RS04555 0.61 -0.3 850,638 - MMJJ_RS04555 0.61 +2.7 850,639 + MMJJ_RS04555 0.61 -1.1 850,639 + MMJJ_RS04555 0.61 -2.7 850,643 + MMJJ_RS04555 0.62 -2.8 850,745 - MMJJ_RS04555 0.69 -0.1 850,780 + MMJJ_RS04555 0.72 -2.2
Or see this region's nucleotide sequence