Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01925

Experiment: McCas_formate_complete sodium bromide 125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01920 and MMJJ_RS01925 are separated by 157 nucleotidesMMJJ_RS01925 and MMJJ_RS01930 are separated by 17 nucleotides MMJJ_RS01920: MMJJ_RS01920 - phosphoglycerate mutase, at 367,404 to 368,690 _RS01920 MMJJ_RS01925: MMJJ_RS01925 - fibrillarin-like rRNA/tRNA 2'-O-methyltransferase, at 368,848 to 369,540 _RS01925 MMJJ_RS01930: MMJJ_RS01930 - Pre-mRNA processing ribonucleoprotein, at 369,558 to 370,988 _RS01930 Position (kb) 368 369 370Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 367.863 kb on + strand, within MMJJ_RS01920at 367.866 kb on - strand, within MMJJ_RS01920at 367.866 kb on - strand, within MMJJ_RS01920at 367.867 kb on + strand, within MMJJ_RS01920at 367.867 kb on + strand, within MMJJ_RS01920at 367.870 kb on - strand, within MMJJ_RS01920at 367.881 kb on - strand, within MMJJ_RS01920at 367.910 kb on - strand, within MMJJ_RS01920at 367.936 kb on + strand, within MMJJ_RS01920at 367.943 kb on + strand, within MMJJ_RS01920at 367.965 kb on + strand, within MMJJ_RS01920at 368.016 kb on + strand, within MMJJ_RS01920at 368.016 kb on + strand, within MMJJ_RS01920at 368.037 kb on + strand, within MMJJ_RS01920at 368.117 kb on - strand, within MMJJ_RS01920at 368.117 kb on - strand, within MMJJ_RS01920at 368.118 kb on + strand, within MMJJ_RS01920at 368.139 kb on - strand, within MMJJ_RS01920at 368.140 kb on + strand, within MMJJ_RS01920at 368.140 kb on + strand, within MMJJ_RS01920at 368.167 kb on + strandat 368.167 kb on + strand, within MMJJ_RS01920at 368.228 kb on - strand, within MMJJ_RS01920at 368.307 kb on + strand, within MMJJ_RS01920at 368.333 kb on - strand, within MMJJ_RS01920at 368.333 kb on - strand, within MMJJ_RS01920at 368.357 kb on - strand, within MMJJ_RS01920at 368.362 kb on + strand, within MMJJ_RS01920at 368.362 kb on + strand, within MMJJ_RS01920at 368.377 kb on - strand, within MMJJ_RS01920at 368.378 kb on + strand, within MMJJ_RS01920at 368.378 kb on + strand, within MMJJ_RS01920at 368.378 kb on + strand, within MMJJ_RS01920at 368.378 kb on + strand, within MMJJ_RS01920at 368.388 kb on - strand, within MMJJ_RS01920at 368.416 kb on - strand, within MMJJ_RS01920at 368.417 kb on + strand, within MMJJ_RS01920at 368.432 kb on - strand, within MMJJ_RS01920at 368.470 kb on + strandat 368.470 kb on + strand, within MMJJ_RS01920at 368.511 kb on - strand, within MMJJ_RS01920at 368.556 kb on - strand, within MMJJ_RS01920at 368.617 kb on + strandat 368.704 kb on + strandat 368.707 kb on - strandat 368.708 kb on + strandat 368.708 kb on + strandat 368.711 kb on + strandat 368.719 kb on - strandat 368.720 kb on + strandat 368.720 kb on + strandat 368.729 kb on + strandat 368.729 kb on + strandat 368.729 kb on + strandat 368.736 kb on - strandat 368.737 kb on + strandat 368.740 kb on + strandat 368.748 kb on - strandat 368.750 kb on - strandat 368.750 kb on - strandat 368.751 kb on + strandat 368.751 kb on + strandat 368.751 kb on + strandat 368.752 kb on - strandat 368.752 kb on - strandat 368.752 kb on - strandat 368.753 kb on + strandat 368.758 kb on - strandat 368.765 kb on + strandat 368.784 kb on - strandat 368.784 kb on - strandat 368.785 kb on + strandat 368.786 kb on - strandat 368.787 kb on + strandat 368.787 kb on + strandat 368.788 kb on - strandat 368.788 kb on - strandat 368.788 kb on - strandat 368.788 kb on - strandat 368.789 kb on + strandat 368.789 kb on + strandat 368.807 kb on - strandat 368.823 kb on + strandat 368.828 kb on - strandat 368.836 kb on - strandat 368.836 kb on - strandat 368.840 kb on + strandat 368.842 kb on + strandat 368.849 kb on - strandat 368.849 kb on - strandat 368.985 kb on - strand, within MMJJ_RS01925at 369.010 kb on + strand, within MMJJ_RS01925at 369.237 kb on + strand, within MMJJ_RS01925at 369.258 kb on - strand, within MMJJ_RS01925at 369.280 kb on + strand, within MMJJ_RS01925at 369.388 kb on - strand, within MMJJ_RS01925at 369.393 kb on - strand, within MMJJ_RS01925at 369.395 kb on - strand, within MMJJ_RS01925at 369.395 kb on - strand, within MMJJ_RS01925at 369.400 kb on - strand, within MMJJ_RS01925at 369.400 kb on - strand, within MMJJ_RS01925at 369.400 kb on - strand, within MMJJ_RS01925at 369.400 kb on - strand, within MMJJ_RS01925at 369.401 kb on + strand, within MMJJ_RS01925at 369.402 kb on - strand, within MMJJ_RS01925at 369.414 kb on + strand, within MMJJ_RS01925at 369.414 kb on + strand, within MMJJ_RS01925at 369.415 kb on - strand, within MMJJ_RS01925at 369.415 kb on - strand, within MMJJ_RS01925at 369.418 kb on - strand, within MMJJ_RS01925at 369.451 kb on - strand, within MMJJ_RS01925at 369.475 kb on + strandat 369.475 kb on + strandat 369.502 kb on - strandat 369.502 kb on - strandat 369.502 kb on - strandat 369.502 kb on - strandat 369.502 kb on - strandat 369.503 kb on + strandat 369.503 kb on + strandat 369.503 kb on + strandat 369.503 kb on + strandat 369.503 kb on + strandat 369.559 kb on - strandat 369.560 kb on + strandat 369.815 kb on - strand, within MMJJ_RS01930at 369.951 kb on + strand, within MMJJ_RS01930at 370.044 kb on - strand, within MMJJ_RS01930at 370.045 kb on + strand, within MMJJ_RS01930at 370.063 kb on + strand, within MMJJ_RS01930at 370.064 kb on - strand, within MMJJ_RS01930at 370.099 kb on + strand, within MMJJ_RS01930at 370.303 kb on + strand, within MMJJ_RS01930at 370.474 kb on - strand, within MMJJ_RS01930at 370.497 kb on + strand, within MMJJ_RS01930at 370.516 kb on - strand, within MMJJ_RS01930at 370.516 kb on - strand, within MMJJ_RS01930at 370.519 kb on + strand, within MMJJ_RS01930

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete sodium bromide 125 mM
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367,863 + MMJJ_RS01920 0.36 -3.2
367,866 - MMJJ_RS01920 0.36 -4.4
367,866 - MMJJ_RS01920 0.36 +1.5
367,867 + MMJJ_RS01920 0.36 -2.3
367,867 + MMJJ_RS01920 0.36 -0.7
367,870 - MMJJ_RS01920 0.36 +1.6
367,881 - MMJJ_RS01920 0.37 -3.5
367,910 - MMJJ_RS01920 0.39 -0.2
367,936 + MMJJ_RS01920 0.41 +1.8
367,943 + MMJJ_RS01920 0.42 -0.7
367,965 + MMJJ_RS01920 0.44 +0.3
368,016 + MMJJ_RS01920 0.48 -0.8
368,016 + MMJJ_RS01920 0.48 -0.4
368,037 + MMJJ_RS01920 0.49 -0.6
368,117 - MMJJ_RS01920 0.55 -2.3
368,117 - MMJJ_RS01920 0.55 +1.0
368,118 + MMJJ_RS01920 0.55 +0.0
368,139 - MMJJ_RS01920 0.57 +1.7
368,140 + MMJJ_RS01920 0.57 +0.6
368,140 + MMJJ_RS01920 0.57 -1.6
368,167 + +1.2
368,167 + MMJJ_RS01920 0.59 -2.8
368,228 - MMJJ_RS01920 0.64 +0.8
368,307 + MMJJ_RS01920 0.70 +1.2
368,333 - MMJJ_RS01920 0.72 -2.4
368,333 - MMJJ_RS01920 0.72 +1.3
368,357 - MMJJ_RS01920 0.74 +1.3
368,362 + MMJJ_RS01920 0.74 +1.5
368,362 + MMJJ_RS01920 0.74 +1.2
368,377 - MMJJ_RS01920 0.76 -3.3
368,378 + MMJJ_RS01920 0.76 +2.2
368,378 + MMJJ_RS01920 0.76 -3.8
368,378 + MMJJ_RS01920 0.76 -2.7
368,378 + MMJJ_RS01920 0.76 -1.5
368,388 - MMJJ_RS01920 0.76 -0.9
368,416 - MMJJ_RS01920 0.79 -1.7
368,417 + MMJJ_RS01920 0.79 -3.1
368,432 - MMJJ_RS01920 0.80 +1.8
368,470 + +0.2
368,470 + MMJJ_RS01920 0.83 +1.7
368,511 - MMJJ_RS01920 0.86 +1.4
368,556 - MMJJ_RS01920 0.90 -0.9
368,617 + -0.2
368,704 + +5.1
368,707 - -2.9
368,708 + -1.8
368,708 + +4.1
368,711 + +1.5
368,719 - -1.4
368,720 + +2.4
368,720 + -1.6
368,729 + -3.4
368,729 + +1.0
368,729 + -3.0
368,736 - -0.0
368,737 + +1.5
368,740 + +2.0
368,748 - -2.1
368,750 - -0.6
368,750 - +1.4
368,751 + -0.4
368,751 + +0.7
368,751 + -0.3
368,752 - -2.9
368,752 - +3.4
368,752 - -3.1
368,753 + +1.6
368,758 - -2.3
368,765 + +0.7
368,784 - -0.0
368,784 - -1.0
368,785 + +2.5
368,786 - -2.0
368,787 + -2.3
368,787 + -0.4
368,788 - +1.2
368,788 - -2.0
368,788 - +0.2
368,788 - +1.3
368,789 + -0.4
368,789 + -4.1
368,807 - -0.5
368,823 + +0.4
368,828 - -0.1
368,836 - -3.7
368,836 - +2.2
368,840 + -1.3
368,842 + +1.3
368,849 - +0.9
368,849 - -1.7
368,985 - MMJJ_RS01925 0.20 -3.7
369,010 + MMJJ_RS01925 0.23 -0.8
369,237 + MMJJ_RS01925 0.56 -1.4
369,258 - MMJJ_RS01925 0.59 +0.9
369,280 + MMJJ_RS01925 0.62 -0.5
369,388 - MMJJ_RS01925 0.78 -2.8
369,393 - MMJJ_RS01925 0.79 -1.8
369,395 - MMJJ_RS01925 0.79 -1.7
369,395 - MMJJ_RS01925 0.79 -0.5
369,400 - MMJJ_RS01925 0.80 -1.3
369,400 - MMJJ_RS01925 0.80 -2.0
369,400 - MMJJ_RS01925 0.80 -0.3
369,400 - MMJJ_RS01925 0.80 +0.7
369,401 + MMJJ_RS01925 0.80 +1.1
369,402 - MMJJ_RS01925 0.80 -1.5
369,414 + MMJJ_RS01925 0.82 -2.8
369,414 + MMJJ_RS01925 0.82 -0.8
369,415 - MMJJ_RS01925 0.82 +0.9
369,415 - MMJJ_RS01925 0.82 -0.4
369,418 - MMJJ_RS01925 0.82 -1.5
369,451 - MMJJ_RS01925 0.87 -2.9
369,475 + -1.2
369,475 + +1.2
369,502 - +0.4
369,502 - +0.7
369,502 - -0.4
369,502 - +3.4
369,502 - +0.2
369,503 + -2.0
369,503 + -0.6
369,503 + -0.8
369,503 + -0.5
369,503 + +0.8
369,559 - +1.4
369,560 + +1.4
369,815 - MMJJ_RS01930 0.18 -3.5
369,951 + MMJJ_RS01930 0.27 -0.4
370,044 - MMJJ_RS01930 0.34 +0.8
370,045 + MMJJ_RS01930 0.34 +0.4
370,063 + MMJJ_RS01930 0.35 -1.8
370,064 - MMJJ_RS01930 0.35 -2.7
370,099 + MMJJ_RS01930 0.38 +3.3
370,303 + MMJJ_RS01930 0.52 -1.5
370,474 - MMJJ_RS01930 0.64 +1.6
370,497 + MMJJ_RS01930 0.66 -0.0
370,516 - MMJJ_RS01930 0.67 -1.3
370,516 - MMJJ_RS01930 0.67 +2.2
370,519 + MMJJ_RS01930 0.67 +1.3

Or see this region's nucleotide sequence