Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01270

Experiment: McCas_formate_complete sodium bromide 125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01255 and MMJJ_RS01260 are separated by 8 nucleotidesMMJJ_RS01260 and MMJJ_RS01265 are separated by 228 nucleotidesMMJJ_RS01265 and MMJJ_RS01270 are separated by 17 nucleotidesMMJJ_RS01270 and MMJJ_RS01275 are separated by 40 nucleotidesMMJJ_RS01275 and MMJJ_RS01280 are separated by 102 nucleotides MMJJ_RS01255: MMJJ_RS01255 - YqhA family protein, at 243,249 to 243,806 _RS01255 MMJJ_RS01260: MMJJ_RS01260 - hypothetical protein, at 243,815 to 244,159 _RS01260 MMJJ_RS01265: MMJJ_RS01265 - cupin domain-containing protein, at 244,388 to 244,732 _RS01265 MMJJ_RS01270: MMJJ_RS01270 - 4Fe-4S binding protein, at 244,750 to 245,382 _RS01270 MMJJ_RS01275: MMJJ_RS01275 - 4Fe-4S dicluster domain-containing protein, at 245,423 to 246,121 _RS01275 MMJJ_RS01280: MMJJ_RS01280 - hydroxylamine reductase, at 246,224 to 247,864 _RS01280 Position (kb) 244 245 246Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 243.805 kb on + strandat 243.820 kb on + strandat 243.820 kb on + strandat 243.834 kb on + strandat 243.863 kb on + strand, within MMJJ_RS01260at 243.926 kb on - strand, within MMJJ_RS01260at 243.927 kb on + strand, within MMJJ_RS01260at 243.961 kb on - strand, within MMJJ_RS01260at 243.962 kb on + strand, within MMJJ_RS01260at 243.962 kb on + strand, within MMJJ_RS01260at 243.962 kb on + strand, within MMJJ_RS01260at 243.968 kb on + strand, within MMJJ_RS01260at 243.971 kb on - strand, within MMJJ_RS01260at 243.989 kb on - strand, within MMJJ_RS01260at 243.989 kb on - strand, within MMJJ_RS01260at 243.989 kb on - strand, within MMJJ_RS01260at 243.989 kb on - strand, within MMJJ_RS01260at 243.989 kb on - strand, within MMJJ_RS01260at 243.990 kb on + strand, within MMJJ_RS01260at 243.990 kb on + strand, within MMJJ_RS01260at 243.990 kb on + strand, within MMJJ_RS01260at 243.990 kb on + strand, within MMJJ_RS01260at 243.990 kb on + strand, within MMJJ_RS01260at 243.990 kb on + strand, within MMJJ_RS01260at 243.990 kb on + strand, within MMJJ_RS01260at 243.990 kb on + strand, within MMJJ_RS01260at 243.991 kb on - strand, within MMJJ_RS01260at 243.992 kb on + strand, within MMJJ_RS01260at 243.992 kb on + strand, within MMJJ_RS01260at 243.992 kb on + strand, within MMJJ_RS01260at 243.992 kb on + strand, within MMJJ_RS01260at 243.992 kb on + strand, within MMJJ_RS01260at 244.021 kb on - strand, within MMJJ_RS01260at 244.026 kb on - strand, within MMJJ_RS01260at 244.038 kb on - strand, within MMJJ_RS01260at 244.039 kb on + strand, within MMJJ_RS01260at 244.039 kb on + strand, within MMJJ_RS01260at 244.067 kb on + strand, within MMJJ_RS01260at 244.084 kb on + strand, within MMJJ_RS01260at 244.084 kb on + strand, within MMJJ_RS01260at 244.204 kb on - strandat 244.204 kb on - strandat 244.212 kb on - strandat 244.213 kb on + strandat 244.219 kb on + strandat 244.239 kb on - strandat 244.265 kb on - strandat 244.303 kb on - strandat 244.308 kb on - strandat 244.309 kb on + strandat 244.331 kb on - strandat 244.331 kb on - strandat 244.332 kb on + strandat 244.332 kb on + strandat 244.332 kb on + strandat 244.332 kb on + strandat 244.332 kb on + strandat 244.333 kb on - strandat 244.334 kb on + strandat 244.338 kb on + strandat 244.347 kb on - strandat 244.347 kb on - strandat 244.348 kb on + strandat 244.352 kb on + strandat 244.354 kb on - strandat 244.373 kb on + strandat 244.375 kb on + strandat 244.397 kb on + strandat 244.397 kb on + strandat 244.397 kb on + strandat 244.397 kb on + strandat 244.506 kb on + strand, within MMJJ_RS01265at 244.506 kb on + strand, within MMJJ_RS01265at 244.506 kb on + strand, within MMJJ_RS01265at 244.511 kb on - strand, within MMJJ_RS01265at 244.583 kb on - strand, within MMJJ_RS01265at 244.584 kb on + strand, within MMJJ_RS01265at 244.644 kb on + strand, within MMJJ_RS01265at 244.644 kb on + strand, within MMJJ_RS01265at 244.652 kb on - strand, within MMJJ_RS01265at 244.674 kb on + strand, within MMJJ_RS01265at 244.674 kb on + strand, within MMJJ_RS01265at 244.735 kb on - strandat 244.763 kb on - strandat 244.763 kb on - strandat 244.768 kb on - strandat 244.789 kb on - strandat 244.876 kb on - strand, within MMJJ_RS01270at 244.893 kb on - strand, within MMJJ_RS01270at 244.893 kb on - strand, within MMJJ_RS01270at 244.903 kb on + strand, within MMJJ_RS01270at 244.928 kb on - strand, within MMJJ_RS01270at 244.928 kb on - strand, within MMJJ_RS01270at 245.013 kb on - strand, within MMJJ_RS01270at 245.040 kb on - strand, within MMJJ_RS01270at 245.107 kb on - strand, within MMJJ_RS01270at 245.108 kb on + strand, within MMJJ_RS01270at 245.143 kb on - strand, within MMJJ_RS01270at 245.181 kb on - strand, within MMJJ_RS01270at 245.197 kb on - strand, within MMJJ_RS01270at 245.197 kb on - strand, within MMJJ_RS01270at 245.208 kb on - strand, within MMJJ_RS01270at 245.215 kb on + strand, within MMJJ_RS01270at 245.218 kb on - strand, within MMJJ_RS01270at 245.244 kb on + strand, within MMJJ_RS01270at 245.244 kb on + strand, within MMJJ_RS01270at 245.244 kb on + strand, within MMJJ_RS01270at 245.267 kb on + strand, within MMJJ_RS01270at 245.317 kb on + strand, within MMJJ_RS01270at 245.467 kb on - strandat 245.472 kb on + strandat 245.472 kb on + strandat 245.477 kb on - strandat 245.550 kb on + strand, within MMJJ_RS01275at 245.630 kb on - strand, within MMJJ_RS01275at 245.630 kb on - strand, within MMJJ_RS01275at 245.722 kb on - strand, within MMJJ_RS01275at 245.727 kb on - strand, within MMJJ_RS01275at 245.727 kb on - strand, within MMJJ_RS01275at 245.728 kb on + strand, within MMJJ_RS01275at 245.992 kb on - strand, within MMJJ_RS01275at 246.030 kb on + strand, within MMJJ_RS01275at 246.034 kb on - strand, within MMJJ_RS01275at 246.034 kb on - strand, within MMJJ_RS01275at 246.034 kb on - strand, within MMJJ_RS01275at 246.074 kb on + strandat 246.138 kb on - strandat 246.138 kb on - strandat 246.138 kb on - strandat 246.138 kb on - strandat 246.139 kb on + strandat 246.143 kb on + strandat 246.159 kb on - strandat 246.205 kb on - strandat 246.205 kb on - strandat 246.206 kb on + strandat 246.209 kb on + strandat 246.218 kb on + strandat 246.266 kb on - strandat 246.287 kb on + strandat 246.297 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete sodium bromide 125 mM
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243,805 + -1.1
243,820 + -1.2
243,820 + +1.5
243,834 + +2.1
243,863 + MMJJ_RS01260 0.14 +2.2
243,926 - MMJJ_RS01260 0.32 +3.1
243,927 + MMJJ_RS01260 0.32 +4.5
243,961 - MMJJ_RS01260 0.42 -0.8
243,962 + MMJJ_RS01260 0.43 +2.4
243,962 + MMJJ_RS01260 0.43 +0.6
243,962 + MMJJ_RS01260 0.43 +2.4
243,968 + MMJJ_RS01260 0.44 +3.8
243,971 - MMJJ_RS01260 0.45 -2.3
243,989 - MMJJ_RS01260 0.50 +0.9
243,989 - MMJJ_RS01260 0.50 +1.3
243,989 - MMJJ_RS01260 0.50 +1.9
243,989 - MMJJ_RS01260 0.50 -1.5
243,989 - MMJJ_RS01260 0.50 +0.7
243,990 + MMJJ_RS01260 0.51 +0.6
243,990 + MMJJ_RS01260 0.51 +3.8
243,990 + MMJJ_RS01260 0.51 +0.4
243,990 + MMJJ_RS01260 0.51 +2.8
243,990 + MMJJ_RS01260 0.51 +1.1
243,990 + MMJJ_RS01260 0.51 -3.9
243,990 + MMJJ_RS01260 0.51 +1.4
243,990 + MMJJ_RS01260 0.51 +2.6
243,991 - MMJJ_RS01260 0.51 +0.5
243,992 + MMJJ_RS01260 0.51 -2.6
243,992 + MMJJ_RS01260 0.51 +1.2
243,992 + MMJJ_RS01260 0.51 +1.0
243,992 + MMJJ_RS01260 0.51 +0.8
243,992 + MMJJ_RS01260 0.51 -1.2
244,021 - MMJJ_RS01260 0.60 +2.1
244,026 - MMJJ_RS01260 0.61 -0.8
244,038 - MMJJ_RS01260 0.65 -0.9
244,039 + MMJJ_RS01260 0.65 +2.7
244,039 + MMJJ_RS01260 0.65 -0.3
244,067 + MMJJ_RS01260 0.73 +0.4
244,084 + MMJJ_RS01260 0.78 -2.7
244,084 + MMJJ_RS01260 0.78 -0.3
244,204 - +1.6
244,204 - -0.9
244,212 - -1.5
244,213 + +2.4
244,219 + +1.3
244,239 - -1.0
244,265 - -0.5
244,303 - +1.9
244,308 - +1.0
244,309 + -2.8
244,331 - -1.3
244,331 - +2.0
244,332 + -0.2
244,332 + -1.7
244,332 + -1.7
244,332 + +1.5
244,332 + -0.5
244,333 - +2.5
244,334 + +2.6
244,338 + -1.7
244,347 - +0.7
244,347 - +0.6
244,348 + +0.5
244,352 + +0.5
244,354 - +1.6
244,373 + +0.1
244,375 + +1.9
244,397 + -0.2
244,397 + +0.1
244,397 + +0.7
244,397 + -2.5
244,506 + MMJJ_RS01265 0.34 -1.0
244,506 + MMJJ_RS01265 0.34 -2.9
244,506 + MMJJ_RS01265 0.34 -0.7
244,511 - MMJJ_RS01265 0.36 +2.2
244,583 - MMJJ_RS01265 0.57 -0.4
244,584 + MMJJ_RS01265 0.57 +1.9
244,644 + MMJJ_RS01265 0.74 +0.1
244,644 + MMJJ_RS01265 0.74 +1.0
244,652 - MMJJ_RS01265 0.77 +2.6
244,674 + MMJJ_RS01265 0.83 +2.1
244,674 + MMJJ_RS01265 0.83 +1.2
244,735 - -2.7
244,763 - -2.2
244,763 - -2.8
244,768 - +0.5
244,789 - -4.1
244,876 - MMJJ_RS01270 0.20 -2.0
244,893 - MMJJ_RS01270 0.23 -1.2
244,893 - MMJJ_RS01270 0.23 +0.8
244,903 + MMJJ_RS01270 0.24 +0.9
244,928 - MMJJ_RS01270 0.28 +0.6
244,928 - MMJJ_RS01270 0.28 +1.4
245,013 - MMJJ_RS01270 0.42 +2.8
245,040 - MMJJ_RS01270 0.46 +1.0
245,107 - MMJJ_RS01270 0.56 +0.6
245,108 + MMJJ_RS01270 0.57 -1.6
245,143 - MMJJ_RS01270 0.62 +2.3
245,181 - MMJJ_RS01270 0.68 +2.1
245,197 - MMJJ_RS01270 0.71 +2.1
245,197 - MMJJ_RS01270 0.71 -1.2
245,208 - MMJJ_RS01270 0.72 -2.6
245,215 + MMJJ_RS01270 0.73 +1.3
245,218 - MMJJ_RS01270 0.74 -3.0
245,244 + MMJJ_RS01270 0.78 +2.1
245,244 + MMJJ_RS01270 0.78 -1.8
245,244 + MMJJ_RS01270 0.78 -2.6
245,267 + MMJJ_RS01270 0.82 +1.9
245,317 + MMJJ_RS01270 0.90 +0.2
245,467 - -2.2
245,472 + +0.1
245,472 + +0.5
245,477 - -3.9
245,550 + MMJJ_RS01275 0.18 -0.1
245,630 - MMJJ_RS01275 0.30 +2.7
245,630 - MMJJ_RS01275 0.30 -1.6
245,722 - MMJJ_RS01275 0.43 -1.5
245,727 - MMJJ_RS01275 0.43 -1.9
245,727 - MMJJ_RS01275 0.43 -2.3
245,728 + MMJJ_RS01275 0.44 +2.0
245,992 - MMJJ_RS01275 0.81 +2.4
246,030 + MMJJ_RS01275 0.87 -1.9
246,034 - MMJJ_RS01275 0.87 -0.1
246,034 - MMJJ_RS01275 0.87 -1.9
246,034 - MMJJ_RS01275 0.87 -3.3
246,074 + -1.2
246,138 - -1.2
246,138 - -1.9
246,138 - +1.2
246,138 - -0.5
246,139 + -3.0
246,143 + +2.7
246,159 - -2.9
246,205 - -0.0
246,205 - +1.7
246,206 + +3.4
246,209 + -4.5
246,218 + +4.0
246,266 - -0.9
246,287 + -1.7
246,297 + +1.5

Or see this region's nucleotide sequence