Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01055

Experiment: McCas_formate_complete sodium bromide 125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01050 and MMJJ_RS01055 are separated by 10 nucleotidesMMJJ_RS01055 and MMJJ_RS01060 are separated by 7 nucleotidesMMJJ_RS01060 and MMJJ_RS01065 are separated by 154 nucleotides MMJJ_RS01050: MMJJ_RS01050 - COG1361 S-layer family protein, at 205,028 to 206,287 _RS01050 MMJJ_RS01055: MMJJ_RS01055 - hypothetical protein, at 206,298 to 206,780 _RS01055 MMJJ_RS01060: MMJJ_RS01060 - ABC transporter ATP-binding protein, at 206,788 to 207,492 _RS01060 MMJJ_RS01065: MMJJ_RS01065 - DUF1700 domain-containing protein, at 207,647 to 208,231 _RS01065 Position (kb) 206 207Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 205.314 kb on - strand, within MMJJ_RS01050at 205.314 kb on - strand, within MMJJ_RS01050at 205.314 kb on - strand, within MMJJ_RS01050at 205.314 kb on - strand, within MMJJ_RS01050at 205.314 kb on - strand, within MMJJ_RS01050at 205.315 kb on + strand, within MMJJ_RS01050at 205.315 kb on + strand, within MMJJ_RS01050at 205.315 kb on + strand, within MMJJ_RS01050at 205.320 kb on - strand, within MMJJ_RS01050at 205.320 kb on - strand, within MMJJ_RS01050at 205.347 kb on + strand, within MMJJ_RS01050at 205.347 kb on + strand, within MMJJ_RS01050at 205.367 kb on - strand, within MMJJ_RS01050at 205.393 kb on - strand, within MMJJ_RS01050at 205.395 kb on - strand, within MMJJ_RS01050at 205.395 kb on - strand, within MMJJ_RS01050at 205.448 kb on + strand, within MMJJ_RS01050at 205.449 kb on - strand, within MMJJ_RS01050at 205.510 kb on - strand, within MMJJ_RS01050at 205.510 kb on - strand, within MMJJ_RS01050at 205.565 kb on - strand, within MMJJ_RS01050at 205.566 kb on + strand, within MMJJ_RS01050at 205.569 kb on - strand, within MMJJ_RS01050at 205.570 kb on + strand, within MMJJ_RS01050at 205.574 kb on + strand, within MMJJ_RS01050at 205.574 kb on + strand, within MMJJ_RS01050at 205.574 kb on + strand, within MMJJ_RS01050at 205.577 kb on - strand, within MMJJ_RS01050at 205.578 kb on + strand, within MMJJ_RS01050at 205.584 kb on - strand, within MMJJ_RS01050at 205.585 kb on + strand, within MMJJ_RS01050at 205.599 kb on + strand, within MMJJ_RS01050at 205.599 kb on + strand, within MMJJ_RS01050at 205.656 kb on - strand, within MMJJ_RS01050at 205.657 kb on + strand, within MMJJ_RS01050at 205.657 kb on + strand, within MMJJ_RS01050at 205.673 kb on + strand, within MMJJ_RS01050at 205.737 kb on + strand, within MMJJ_RS01050at 205.797 kb on + strand, within MMJJ_RS01050at 205.847 kb on - strand, within MMJJ_RS01050at 205.867 kb on + strand, within MMJJ_RS01050at 205.904 kb on - strand, within MMJJ_RS01050at 205.943 kb on - strand, within MMJJ_RS01050at 205.954 kb on - strand, within MMJJ_RS01050at 205.955 kb on + strand, within MMJJ_RS01050at 205.966 kb on - strand, within MMJJ_RS01050at 205.971 kb on + strand, within MMJJ_RS01050at 206.001 kb on + strand, within MMJJ_RS01050at 206.072 kb on - strand, within MMJJ_RS01050at 206.072 kb on - strand, within MMJJ_RS01050at 206.077 kb on + strand, within MMJJ_RS01050at 206.120 kb on + strand, within MMJJ_RS01050at 206.120 kb on + strandat 206.166 kb on + strandat 206.174 kb on + strandat 206.258 kb on + strandat 206.306 kb on - strandat 206.371 kb on - strand, within MMJJ_RS01055at 206.473 kb on - strand, within MMJJ_RS01055at 206.542 kb on + strand, within MMJJ_RS01055at 206.587 kb on + strandat 206.667 kb on - strand, within MMJJ_RS01055at 206.726 kb on + strand, within MMJJ_RS01055at 206.843 kb on + strandat 206.964 kb on - strand, within MMJJ_RS01060at 207.138 kb on - strand, within MMJJ_RS01060at 207.207 kb on - strand, within MMJJ_RS01060at 207.209 kb on - strand, within MMJJ_RS01060at 207.209 kb on - strand, within MMJJ_RS01060at 207.210 kb on + strand, within MMJJ_RS01060at 207.221 kb on + strand, within MMJJ_RS01060at 207.222 kb on - strand, within MMJJ_RS01060at 207.258 kb on - strand, within MMJJ_RS01060at 207.280 kb on + strand, within MMJJ_RS01060at 207.295 kb on - strand, within MMJJ_RS01060at 207.403 kb on + strand, within MMJJ_RS01060at 207.406 kb on - strand, within MMJJ_RS01060at 207.472 kb on + strandat 207.478 kb on - strandat 207.481 kb on - strandat 207.481 kb on - strandat 207.481 kb on - strandat 207.481 kb on - strandat 207.515 kb on - strandat 207.519 kb on + strandat 207.546 kb on + strandat 207.634 kb on - strandat 207.733 kb on - strand, within MMJJ_RS01065at 207.733 kb on - strand, within MMJJ_RS01065at 207.734 kb on + strand, within MMJJ_RS01065

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete sodium bromide 125 mM
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205,314 - MMJJ_RS01050 0.23 -0.9
205,314 - MMJJ_RS01050 0.23 +0.3
205,314 - MMJJ_RS01050 0.23 -1.6
205,314 - MMJJ_RS01050 0.23 -0.9
205,314 - MMJJ_RS01050 0.23 +1.7
205,315 + MMJJ_RS01050 0.23 -1.3
205,315 + MMJJ_RS01050 0.23 -0.2
205,315 + MMJJ_RS01050 0.23 -0.9
205,320 - MMJJ_RS01050 0.23 -2.5
205,320 - MMJJ_RS01050 0.23 +1.4
205,347 + MMJJ_RS01050 0.25 +1.5
205,347 + MMJJ_RS01050 0.25 +1.9
205,367 - MMJJ_RS01050 0.27 -1.9
205,393 - MMJJ_RS01050 0.29 -1.2
205,395 - MMJJ_RS01050 0.29 +2.7
205,395 - MMJJ_RS01050 0.29 -3.5
205,448 + MMJJ_RS01050 0.33 -3.4
205,449 - MMJJ_RS01050 0.33 +0.7
205,510 - MMJJ_RS01050 0.38 -0.9
205,510 - MMJJ_RS01050 0.38 -0.2
205,565 - MMJJ_RS01050 0.43 +2.0
205,566 + MMJJ_RS01050 0.43 -1.1
205,569 - MMJJ_RS01050 0.43 -1.9
205,570 + MMJJ_RS01050 0.43 -1.7
205,574 + MMJJ_RS01050 0.43 -0.1
205,574 + MMJJ_RS01050 0.43 -1.7
205,574 + MMJJ_RS01050 0.43 -2.1
205,577 - MMJJ_RS01050 0.44 +0.6
205,578 + MMJJ_RS01050 0.44 -4.3
205,584 - MMJJ_RS01050 0.44 -0.2
205,585 + MMJJ_RS01050 0.44 -1.8
205,599 + MMJJ_RS01050 0.45 +1.5
205,599 + MMJJ_RS01050 0.45 +0.3
205,656 - MMJJ_RS01050 0.50 -1.2
205,657 + MMJJ_RS01050 0.50 +0.6
205,657 + MMJJ_RS01050 0.50 +2.9
205,673 + MMJJ_RS01050 0.51 -1.7
205,737 + MMJJ_RS01050 0.56 +0.9
205,797 + MMJJ_RS01050 0.61 -3.8
205,847 - MMJJ_RS01050 0.65 +1.0
205,867 + MMJJ_RS01050 0.67 -0.9
205,904 - MMJJ_RS01050 0.70 +1.9
205,943 - MMJJ_RS01050 0.73 -0.4
205,954 - MMJJ_RS01050 0.73 -0.4
205,955 + MMJJ_RS01050 0.74 +2.2
205,966 - MMJJ_RS01050 0.74 +1.7
205,971 + MMJJ_RS01050 0.75 -0.9
206,001 + MMJJ_RS01050 0.77 +1.6
206,072 - MMJJ_RS01050 0.83 +3.4
206,072 - MMJJ_RS01050 0.83 -1.7
206,077 + MMJJ_RS01050 0.83 +2.4
206,120 + MMJJ_RS01050 0.87 -3.4
206,120 + +1.1
206,166 + -0.4
206,174 + -0.9
206,258 + -1.4
206,306 - +0.4
206,371 - MMJJ_RS01055 0.15 +0.2
206,473 - MMJJ_RS01055 0.36 +2.2
206,542 + MMJJ_RS01055 0.51 +0.9
206,587 + +1.1
206,667 - MMJJ_RS01055 0.76 +3.2
206,726 + MMJJ_RS01055 0.89 -2.3
206,843 + -0.5
206,964 - MMJJ_RS01060 0.25 +0.4
207,138 - MMJJ_RS01060 0.50 +0.7
207,207 - MMJJ_RS01060 0.59 +0.9
207,209 - MMJJ_RS01060 0.60 -3.5
207,209 - MMJJ_RS01060 0.60 -3.3
207,210 + MMJJ_RS01060 0.60 -1.5
207,221 + MMJJ_RS01060 0.61 -2.5
207,222 - MMJJ_RS01060 0.62 +1.7
207,258 - MMJJ_RS01060 0.67 -0.3
207,280 + MMJJ_RS01060 0.70 +1.9
207,295 - MMJJ_RS01060 0.72 -1.7
207,403 + MMJJ_RS01060 0.87 +1.5
207,406 - MMJJ_RS01060 0.88 -2.8
207,472 + +1.7
207,478 - -0.7
207,481 - +2.7
207,481 - +1.0
207,481 - +2.3
207,481 - -3.4
207,515 - -2.6
207,519 + -0.9
207,546 + +1.8
207,634 - +0.1
207,733 - MMJJ_RS01065 0.15 -0.9
207,733 - MMJJ_RS01065 0.15 +2.1
207,734 + MMJJ_RS01065 0.15 +1.3

Or see this region's nucleotide sequence