Experiment: McCas_formate_complete 3-nitroxypropanol 0.00208333333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00440 and MMJJ_RS09330 are separated by 35 nucleotides MMJJ_RS09330 and MMJJ_RS00445 are separated by 87 nucleotides MMJJ_RS00445 and MMJJ_RS00450 are separated by 11 nucleotides MMJJ_RS00450 and MMJJ_RS00455 are separated by 66 nucleotides
MMJJ_RS00440: MMJJ_RS00440 - selenide, water dikinase SelD, at 79,545 to 80,552
_RS00440
MMJJ_RS09330: MMJJ_RS09330 - hypothetical protein, at 80,588 to 80,746
_RS09330
MMJJ_RS00445: MMJJ_RS00445 - class III signal peptide-containing protein, at 80,834 to 81,061
_RS00445
MMJJ_RS00450: MMJJ_RS00450 - DUF126 domain-containing protein, at 81,073 to 81,465
_RS00450
MMJJ_RS00455: MMJJ_RS00455 - NOG1 family protein, at 81,532 to 82,569
_RS00455
Position (kb) 80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 79.601 kb on + strand at 79.604 kb on + strand at 79.604 kb on + strand at 79.635 kb on - strand at 79.726 kb on - strand, within MMJJ_RS00440 at 79.727 kb on + strand, within MMJJ_RS00440 at 79.764 kb on + strand, within MMJJ_RS00440 at 79.780 kb on - strand, within MMJJ_RS00440 at 79.780 kb on - strand, within MMJJ_RS00440 at 79.780 kb on - strand, within MMJJ_RS00440 at 79.780 kb on - strand, within MMJJ_RS00440 at 79.780 kb on - strand, within MMJJ_RS00440 at 79.780 kb on - strand, within MMJJ_RS00440 at 79.780 kb on - strand, within MMJJ_RS00440 at 79.781 kb on + strand, within MMJJ_RS00440 at 79.781 kb on + strand, within MMJJ_RS00440 at 79.781 kb on + strand, within MMJJ_RS00440 at 79.781 kb on + strand, within MMJJ_RS00440 at 79.783 kb on + strand, within MMJJ_RS00440 at 79.819 kb on - strand, within MMJJ_RS00440 at 79.933 kb on - strand, within MMJJ_RS00440 at 79.949 kb on + strand, within MMJJ_RS00440 at 79.949 kb on + strand, within MMJJ_RS00440 at 79.995 kb on + strand, within MMJJ_RS00440 at 79.995 kb on + strand, within MMJJ_RS00440 at 79.995 kb on + strand, within MMJJ_RS00440 at 79.995 kb on + strand, within MMJJ_RS00440 at 80.009 kb on - strand, within MMJJ_RS00440 at 80.024 kb on + strand, within MMJJ_RS00440 at 80.169 kb on + strand, within MMJJ_RS00440 at 80.407 kb on - strand, within MMJJ_RS00440 at 80.590 kb on + strand at 80.610 kb on - strand, within MMJJ_RS09330 at 80.683 kb on - strand, within MMJJ_RS09330 at 80.684 kb on + strand, within MMJJ_RS09330 at 80.684 kb on + strand, within MMJJ_RS09330 at 80.708 kb on - strand, within MMJJ_RS09330 at 80.708 kb on - strand, within MMJJ_RS09330 at 80.708 kb on - strand, within MMJJ_RS09330 at 80.709 kb on + strand, within MMJJ_RS09330 at 80.709 kb on + strand, within MMJJ_RS09330 at 80.709 kb on + strand, within MMJJ_RS09330 at 80.718 kb on - strand, within MMJJ_RS09330 at 80.719 kb on + strand, within MMJJ_RS09330 at 80.750 kb on + strand at 80.750 kb on + strand at 80.768 kb on - strand at 80.768 kb on - strand at 80.772 kb on - strand at 80.773 kb on + strand at 80.773 kb on + strand at 80.773 kb on + strand at 80.774 kb on - strand at 80.784 kb on - strand at 80.794 kb on - strand at 80.794 kb on - strand at 80.795 kb on + strand at 80.799 kb on + strand at 80.805 kb on + strand at 80.816 kb on + strand at 80.823 kb on + strand at 80.912 kb on + strand, within MMJJ_RS00445 at 80.923 kb on + strand, within MMJJ_RS00445 at 80.923 kb on + strand, within MMJJ_RS00445 at 80.923 kb on + strand, within MMJJ_RS00445 at 80.934 kb on + strand, within MMJJ_RS00445 at 80.939 kb on - strand, within MMJJ_RS00445 at 80.943 kb on - strand, within MMJJ_RS00445 at 80.944 kb on + strand, within MMJJ_RS00445 at 80.944 kb on + strand, within MMJJ_RS00445 at 80.944 kb on + strand, within MMJJ_RS00445 at 80.950 kb on - strand, within MMJJ_RS00445 at 80.968 kb on - strand at 80.974 kb on + strand, within MMJJ_RS00445 at 81.008 kb on + strand, within MMJJ_RS00445 at 81.008 kb on + strand, within MMJJ_RS00445 at 81.029 kb on + strand, within MMJJ_RS00445 at 81.048 kb on - strand at 81.049 kb on + strand at 81.049 kb on + strand at 81.231 kb on + strand, within MMJJ_RS00450 at 81.271 kb on - strand, within MMJJ_RS00450 at 81.388 kb on + strand, within MMJJ_RS00450 at 81.416 kb on - strand, within MMJJ_RS00450 at 81.417 kb on + strand at 81.505 kb on + strand at 81.579 kb on + strand at 81.579 kb on + strand at 81.579 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 3-nitroxypropanol 0.00208333333333333 mM remove 79,601 + +2.6 79,604 + +0.3 79,604 + +2.7 79,635 - -0.3 79,726 - MMJJ_RS00440 0.18 +3.5 79,727 + MMJJ_RS00440 0.18 +2.8 79,764 + MMJJ_RS00440 0.22 +3.2 79,780 - MMJJ_RS00440 0.23 +1.8 79,780 - MMJJ_RS00440 0.23 +2.7 79,780 - MMJJ_RS00440 0.23 +3.2 79,780 - MMJJ_RS00440 0.23 +0.5 79,780 - MMJJ_RS00440 0.23 +6.0 79,780 - MMJJ_RS00440 0.23 +4.6 79,780 - MMJJ_RS00440 0.23 +4.0 79,781 + MMJJ_RS00440 0.23 +2.4 79,781 + MMJJ_RS00440 0.23 +2.4 79,781 + MMJJ_RS00440 0.23 +2.6 79,781 + MMJJ_RS00440 0.23 +1.1 79,783 + MMJJ_RS00440 0.24 +2.5 79,819 - MMJJ_RS00440 0.27 +3.1 79,933 - MMJJ_RS00440 0.38 +1.2 79,949 + MMJJ_RS00440 0.40 +1.9 79,949 + MMJJ_RS00440 0.40 +2.7 79,995 + MMJJ_RS00440 0.45 -1.6 79,995 + MMJJ_RS00440 0.45 +1.5 79,995 + MMJJ_RS00440 0.45 +3.8 79,995 + MMJJ_RS00440 0.45 +3.8 80,009 - MMJJ_RS00440 0.46 -3.0 80,024 + MMJJ_RS00440 0.48 -1.3 80,169 + MMJJ_RS00440 0.62 +3.0 80,407 - MMJJ_RS00440 0.86 +3.1 80,590 + +0.3 80,610 - MMJJ_RS09330 0.14 +1.0 80,683 - MMJJ_RS09330 0.60 +2.4 80,684 + MMJJ_RS09330 0.60 -1.3 80,684 + MMJJ_RS09330 0.60 -1.3 80,708 - MMJJ_RS09330 0.75 +1.0 80,708 - MMJJ_RS09330 0.75 +3.1 80,708 - MMJJ_RS09330 0.75 +1.3 80,709 + MMJJ_RS09330 0.76 +5.3 80,709 + MMJJ_RS09330 0.76 +0.6 80,709 + MMJJ_RS09330 0.76 -0.3 80,718 - MMJJ_RS09330 0.82 -0.1 80,719 + MMJJ_RS09330 0.82 +1.0 80,750 + +2.8 80,750 + -0.3 80,768 - -1.3 80,768 - -1.3 80,772 - -1.8 80,773 + -0.6 80,773 + -1.0 80,773 + -2.2 80,774 - -1.0 80,784 - -2.7 80,794 - -0.6 80,794 - +0.3 80,795 + +5.0 80,799 + -3.5 80,805 + +1.0 80,816 + -0.6 80,823 + +0.4 80,912 + MMJJ_RS00445 0.34 -1.1 80,923 + MMJJ_RS00445 0.39 -0.5 80,923 + MMJJ_RS00445 0.39 -0.7 80,923 + MMJJ_RS00445 0.39 -1.3 80,934 + MMJJ_RS00445 0.44 +0.4 80,939 - MMJJ_RS00445 0.46 +1.3 80,943 - MMJJ_RS00445 0.48 -1.6 80,944 + MMJJ_RS00445 0.48 +0.2 80,944 + MMJJ_RS00445 0.48 +0.5 80,944 + MMJJ_RS00445 0.48 -1.3 80,950 - MMJJ_RS00445 0.51 -2.3 80,968 - -1.1 80,974 + MMJJ_RS00445 0.61 -3.6 81,008 + MMJJ_RS00445 0.76 +2.5 81,008 + MMJJ_RS00445 0.76 -2.0 81,029 + MMJJ_RS00445 0.86 +0.0 81,048 - +0.3 81,049 + +1.3 81,049 + +0.0 81,231 + MMJJ_RS00450 0.40 -1.7 81,271 - MMJJ_RS00450 0.50 -1.7 81,388 + MMJJ_RS00450 0.80 -1.6 81,416 - MMJJ_RS00450 0.87 +0.3 81,417 + +0.3 81,505 + -0.7 81,579 + -1.6 81,579 + -1.7 81,579 + +0.3
Or see this region's nucleotide sequence