Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS09155

Experiment: McCas_formate_complete 3-nitroxypropanol 0.00208333333333333 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMJJ_RS09150 and MMJJ_RS09155 are separated by 108 nucleotidesMMJJ_RS09155 and MMJJ_RS09160 are separated by 22 nucleotides MMJJ_RS09150: MMJJ_RS09150 - glutamate--tRNA ligase, at 1,696,890 to 1,698,557 _RS09150 MMJJ_RS09155: MMJJ_RS09155 - RluA family pseudouridine synthase, at 1,698,666 to 1,699,562 _RS09155 MMJJ_RS09160: MMJJ_RS09160 - dihydroorotase, at 1,699,585 to 1,700,841 _RS09160 Position (kb) 1698 1699 1700Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1697.806 kb on + strand, within MMJJ_RS09150at 1698.555 kb on - strandat 1698.582 kb on + strandat 1698.606 kb on + strandat 1698.609 kb on + strandat 1698.623 kb on + strandat 1698.636 kb on + strandat 1698.636 kb on + strandat 1698.641 kb on + strandat 1698.641 kb on + strandat 1698.647 kb on + strandat 1698.773 kb on + strand, within MMJJ_RS09155at 1698.858 kb on - strand, within MMJJ_RS09155at 1698.859 kb on + strand, within MMJJ_RS09155at 1698.910 kb on - strand, within MMJJ_RS09155at 1698.916 kb on - strand, within MMJJ_RS09155at 1698.916 kb on - strand, within MMJJ_RS09155at 1698.917 kb on + strand, within MMJJ_RS09155at 1698.917 kb on + strand, within MMJJ_RS09155at 1698.917 kb on + strand, within MMJJ_RS09155at 1698.917 kb on + strand, within MMJJ_RS09155at 1698.937 kb on - strand, within MMJJ_RS09155at 1698.963 kb on + strand, within MMJJ_RS09155at 1698.978 kb on + strand, within MMJJ_RS09155at 1699.047 kb on - strand, within MMJJ_RS09155at 1699.055 kb on + strand, within MMJJ_RS09155at 1699.055 kb on + strand, within MMJJ_RS09155at 1699.063 kb on - strand, within MMJJ_RS09155at 1699.063 kb on - strand, within MMJJ_RS09155at 1699.085 kb on - strand, within MMJJ_RS09155at 1699.168 kb on - strand, within MMJJ_RS09155at 1699.169 kb on + strand, within MMJJ_RS09155at 1699.169 kb on + strand, within MMJJ_RS09155at 1699.169 kb on + strand, within MMJJ_RS09155at 1699.169 kb on + strand, within MMJJ_RS09155at 1699.169 kb on + strand, within MMJJ_RS09155at 1699.170 kb on - strand, within MMJJ_RS09155at 1699.170 kb on - strand, within MMJJ_RS09155at 1699.170 kb on - strand, within MMJJ_RS09155at 1699.170 kb on - strand, within MMJJ_RS09155at 1699.170 kb on - strand, within MMJJ_RS09155at 1699.170 kb on - strand, within MMJJ_RS09155at 1699.171 kb on + strand, within MMJJ_RS09155at 1699.171 kb on + strand, within MMJJ_RS09155at 1699.171 kb on + strand, within MMJJ_RS09155at 1699.171 kb on + strand, within MMJJ_RS09155at 1699.171 kb on + strand, within MMJJ_RS09155at 1699.171 kb on + strand, within MMJJ_RS09155at 1699.171 kb on + strand, within MMJJ_RS09155at 1699.172 kb on - strand, within MMJJ_RS09155at 1699.172 kb on - strand, within MMJJ_RS09155at 1699.173 kb on + strand, within MMJJ_RS09155at 1699.173 kb on + strand, within MMJJ_RS09155at 1699.183 kb on - strand, within MMJJ_RS09155at 1699.184 kb on + strand, within MMJJ_RS09155at 1699.184 kb on + strand, within MMJJ_RS09155at 1699.214 kb on - strand, within MMJJ_RS09155at 1699.250 kb on + strand, within MMJJ_RS09155at 1699.262 kb on + strand, within MMJJ_RS09155at 1699.265 kb on - strand, within MMJJ_RS09155at 1699.265 kb on - strand, within MMJJ_RS09155at 1699.265 kb on - strand, within MMJJ_RS09155at 1699.265 kb on - strand, within MMJJ_RS09155at 1699.266 kb on + strand, within MMJJ_RS09155at 1699.266 kb on + strand, within MMJJ_RS09155at 1699.266 kb on + strand, within MMJJ_RS09155at 1699.289 kb on - strand, within MMJJ_RS09155at 1699.289 kb on - strand, within MMJJ_RS09155at 1699.290 kb on + strand, within MMJJ_RS09155at 1699.293 kb on - strand, within MMJJ_RS09155at 1699.294 kb on + strand, within MMJJ_RS09155at 1699.343 kb on + strand, within MMJJ_RS09155at 1699.386 kb on + strand, within MMJJ_RS09155at 1699.395 kb on - strand, within MMJJ_RS09155at 1699.399 kb on - strand, within MMJJ_RS09155at 1699.399 kb on - strand, within MMJJ_RS09155at 1699.923 kb on + strand, within MMJJ_RS09160at 1700.447 kb on - strand, within MMJJ_RS09160at 1700.448 kb on + strand, within MMJJ_RS09160

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete 3-nitroxypropanol 0.00208333333333333 mM
remove
1,697,806 + MMJJ_RS09150 0.55 +2.4
1,698,555 - +2.6
1,698,582 + +0.1
1,698,606 + -1.2
1,698,609 + +1.4
1,698,623 + -3.8
1,698,636 + +1.3
1,698,636 + -2.2
1,698,641 + +1.2
1,698,641 + -2.3
1,698,647 + -0.2
1,698,773 + MMJJ_RS09155 0.12 -1.8
1,698,858 - MMJJ_RS09155 0.21 -2.6
1,698,859 + MMJJ_RS09155 0.22 -0.4
1,698,910 - MMJJ_RS09155 0.27 -2.4
1,698,916 - MMJJ_RS09155 0.28 -2.9
1,698,916 - MMJJ_RS09155 0.28 -4.6
1,698,917 + MMJJ_RS09155 0.28 -3.4
1,698,917 + MMJJ_RS09155 0.28 -0.6
1,698,917 + MMJJ_RS09155 0.28 +0.2
1,698,917 + MMJJ_RS09155 0.28 -0.6
1,698,937 - MMJJ_RS09155 0.30 +2.2
1,698,963 + MMJJ_RS09155 0.33 -1.8
1,698,978 + MMJJ_RS09155 0.35 -0.0
1,699,047 - MMJJ_RS09155 0.42 -0.9
1,699,055 + MMJJ_RS09155 0.43 -2.3
1,699,055 + MMJJ_RS09155 0.43 +1.6
1,699,063 - MMJJ_RS09155 0.44 +2.6
1,699,063 - MMJJ_RS09155 0.44 +1.7
1,699,085 - MMJJ_RS09155 0.47 +1.4
1,699,168 - MMJJ_RS09155 0.56 -2.1
1,699,169 + MMJJ_RS09155 0.56 -1.8
1,699,169 + MMJJ_RS09155 0.56 -0.2
1,699,169 + MMJJ_RS09155 0.56 -3.6
1,699,169 + MMJJ_RS09155 0.56 -3.1
1,699,169 + MMJJ_RS09155 0.56 -3.6
1,699,170 - MMJJ_RS09155 0.56 -2.8
1,699,170 - MMJJ_RS09155 0.56 -1.0
1,699,170 - MMJJ_RS09155 0.56 -2.2
1,699,170 - MMJJ_RS09155 0.56 -3.4
1,699,170 - MMJJ_RS09155 0.56 -2.1
1,699,170 - MMJJ_RS09155 0.56 +2.1
1,699,171 + MMJJ_RS09155 0.56 -1.4
1,699,171 + MMJJ_RS09155 0.56 -3.4
1,699,171 + MMJJ_RS09155 0.56 +4.4
1,699,171 + MMJJ_RS09155 0.56 +0.3
1,699,171 + MMJJ_RS09155 0.56 +3.9
1,699,171 + MMJJ_RS09155 0.56 +3.9
1,699,171 + MMJJ_RS09155 0.56 +1.8
1,699,172 - MMJJ_RS09155 0.56 -1.0
1,699,172 - MMJJ_RS09155 0.56 -1.8
1,699,173 + MMJJ_RS09155 0.57 -0.9
1,699,173 + MMJJ_RS09155 0.57 -2.4
1,699,183 - MMJJ_RS09155 0.58 +2.3
1,699,184 + MMJJ_RS09155 0.58 -4.1
1,699,184 + MMJJ_RS09155 0.58 -1.4
1,699,214 - MMJJ_RS09155 0.61 -0.0
1,699,250 + MMJJ_RS09155 0.65 -0.3
1,699,262 + MMJJ_RS09155 0.66 +1.0
1,699,265 - MMJJ_RS09155 0.67 +2.9
1,699,265 - MMJJ_RS09155 0.67 -0.5
1,699,265 - MMJJ_RS09155 0.67 +1.8
1,699,265 - MMJJ_RS09155 0.67 -0.2
1,699,266 + MMJJ_RS09155 0.67 -1.9
1,699,266 + MMJJ_RS09155 0.67 -1.4
1,699,266 + MMJJ_RS09155 0.67 -1.3
1,699,289 - MMJJ_RS09155 0.69 -1.9
1,699,289 - MMJJ_RS09155 0.69 -0.2
1,699,290 + MMJJ_RS09155 0.70 -0.8
1,699,293 - MMJJ_RS09155 0.70 +5.0
1,699,294 + MMJJ_RS09155 0.70 -2.1
1,699,343 + MMJJ_RS09155 0.75 -0.1
1,699,386 + MMJJ_RS09155 0.80 -2.6
1,699,395 - MMJJ_RS09155 0.81 +2.8
1,699,399 - MMJJ_RS09155 0.82 -2.5
1,699,399 - MMJJ_RS09155 0.82 -2.9
1,699,923 + MMJJ_RS09160 0.27 -1.4
1,700,447 - MMJJ_RS09160 0.69 +0.4
1,700,448 + MMJJ_RS09160 0.69 -0.9

Or see this region's nucleotide sequence