Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06555

Experiment: McCas_formate_complete 3-nitroxypropanol 0.00208333333333333 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete 3-nitroxypropanol 0.00208333333333333 mM
1,208,025	-				+0.5
1,208,025	-				+1.5
1,208,039	-				-1.5
1,208,076	-				+1.4
1,208,077	+				-0.5
1,208,077	+				+0.5
1,208,082	-				+1.5
1,208,082	-				+6.3
1,208,101	+				+0.5
1,208,102	-				-2.5
1,208,102	-				+0.2
1,208,102	-				+4.2
1,208,106	-				+2.0
1,208,106	-				-0.9
1,208,106	-				+0.5
1,208,133	+				+1.7
1,208,136	-				-0.5
1,208,139	-				+0.5
1,208,140	+				-1.3
1,208,140	+				+0.3
1,208,162	-				-3.2
1,208,165	+				-1.5
1,208,168	-				+3.2
1,208,169	+				-0.2
1,208,174	-				-1.6
1,208,179	-				-1.2
1,208,183	+				-4.4
1,208,183	+				+1.8
1,208,183	+				+1.6
1,208,183	+				-3.4
1,208,202	-				-1.0
1,208,212	-				-3.0
1,208,227	-				-2.1
1,208,277	-				+1.5
1,208,277	-				+2.0
1,208,289	-				-1.0
1,208,289	-				-2.2
1,208,290	+				+2.2
1,208,299	+				+1.3
1,208,364	-		MMJJ_RS06550	0.17	+2.2
1,208,365	+		MMJJ_RS06550	0.17	+1.1
1,208,368	-		MMJJ_RS06550	0.18	+1.7
1,208,369	+		MMJJ_RS06550	0.18	-0.9
1,208,369	+		MMJJ_RS06550	0.18	+0.1
1,208,382	-		MMJJ_RS06550	0.20	+1.0
1,208,382	-		MMJJ_RS06550	0.20	+1.5
1,208,382	-		MMJJ_RS06550	0.20	+1.5
1,208,382	-		MMJJ_RS06550	0.20	-1.1
1,208,382	-		MMJJ_RS06550	0.20	-0.8
1,208,383	+		MMJJ_RS06550	0.20	+0.8
1,208,383	+		MMJJ_RS06550	0.20	-2.7
1,208,383	+		MMJJ_RS06550	0.20	-0.7
1,208,383	+		MMJJ_RS06550	0.20	-0.6
1,208,433	-		MMJJ_RS06550	0.26	-1.3
1,208,444	-		MMJJ_RS06550	0.28	-4.0
1,208,448	-		MMJJ_RS06550	0.28	-0.0
1,208,449	+		MMJJ_RS06550	0.28	-1.3
1,208,460	+		MMJJ_RS06550	0.30	+0.2
1,208,494	-		MMJJ_RS06550	0.34	-0.3
1,208,494	-		MMJJ_RS06550	0.34	+1.3
1,208,537	+		MMJJ_RS06550	0.40	-2.9
1,208,545	+		MMJJ_RS06550	0.41	+0.1
1,208,628	-		MMJJ_RS06550	0.52	-0.1
1,208,628	-		MMJJ_RS06550	0.52	-3.7
1,208,629	+		MMJJ_RS06550	0.52	+1.4
1,208,629	+		MMJJ_RS06550	0.52	+0.8
1,208,631	-		MMJJ_RS06550	0.52	-1.7
1,208,632	+		MMJJ_RS06550	0.52	-3.5
1,208,654	-		MMJJ_RS06550	0.55	-2.8
1,208,654	-		MMJJ_RS06550	0.55	-1.9
1,208,654	-		MMJJ_RS06550	0.55	-2.2
1,208,655	+		MMJJ_RS06550	0.55	+3.6
1,208,655	+		MMJJ_RS06550	0.55	+0.8
1,208,661	-		MMJJ_RS06550	0.56	+1.2
1,208,822	+		MMJJ_RS06550	0.77	-2.4
1,208,822	+		MMJJ_RS06550	0.77	-4.0
1,208,841	-		MMJJ_RS06550	0.79	-0.0
1,208,842	+		MMJJ_RS06550	0.80	+1.5
1,208,847	-		MMJJ_RS06550	0.80	-0.1
1,208,848	+		MMJJ_RS06550	0.80	-1.6
1,208,848	+		MMJJ_RS06550	0.80	+2.1
1,208,848	+		MMJJ_RS06550	0.80	-2.2
1,208,852	-		MMJJ_RS06550	0.81	+1.5
1,208,853	+		MMJJ_RS06550	0.81	-1.5
1,208,853	+		MMJJ_RS06550	0.81	-1.3
1,208,888	+		MMJJ_RS06550	0.86	+0.8
1,208,901	+		MMJJ_RS06550	0.87	-2.7
1,208,908	-		MMJJ_RS06550	0.88	+1.1
1,208,908	-		MMJJ_RS06550	0.88	-3.1
1,208,908	-		MMJJ_RS06550	0.88	+1.8
1,208,909	+		MMJJ_RS06550	0.88	+1.1
1,208,932	-				+1.0
1,208,935	-				-1.9
1,208,943	-				+2.9
1,208,943	-				-2.5
1,208,951	+				+0.8
1,208,951	+				-0.8
1,208,951	+				+0.5
1,208,968	+				-1.0
1,208,968	+				+2.0
1,208,979	-				+0.1
1,208,979	-				-0.4
1,208,979	-				+1.0
1,208,979	-				+0.1
1,208,984	-				-3.3
1,208,984	-				+1.7
1,208,984	-				+1.1
1,208,985	+				+2.4
1,208,986	-				-0.6
1,208,986	-				-2.0
1,208,987	+				+0.3
1,208,987	+				+0.8
1,209,006	-				+1.4
1,209,006	-				+1.8
1,209,009	+				-1.6
1,209,009	+				-2.9
1,209,009	+				+0.5
1,209,009	+				+1.4
1,209,018	-				+1.3
1,209,018	-				+1.3
1,209,018	-				+1.5
1,209,019	+				+3.7
1,209,019	+				-0.8
1,209,032	-				+0.3
1,209,037	+				+1.5
1,209,037	+				-0.8
1,209,061	+				+1.0
1,209,074	-				+0.5
1,209,074	-				-2.9
1,209,091	-				+1.4
1,209,091	-				+0.2
1,209,134	-		MMJJ_RS06555	0.13	-0.0
1,209,180	+		MMJJ_RS06555	0.18	-1.0
1,209,182	+		MMJJ_RS06555	0.18	+0.7
1,209,198	-		MMJJ_RS06555	0.20	-0.9
1,209,277	-		MMJJ_RS06555	0.28	+0.4
1,209,278	+		MMJJ_RS06555	0.28	-0.2
1,209,293	+		MMJJ_RS06555	0.30	-1.3
1,209,306	-		MMJJ_RS06555	0.31	-0.5
1,209,306	-				+1.5
1,209,307	+		MMJJ_RS06555	0.31	+1.9
1,209,342	+		MMJJ_RS06555	0.35	-1.3
1,209,366	-		MMJJ_RS06555	0.38	-1.4
1,209,375	-		MMJJ_RS06555	0.39	-0.5
1,209,376	+		MMJJ_RS06555	0.39	-2.9
1,209,401	-		MMJJ_RS06555	0.41	-1.5
1,209,401	-		MMJJ_RS06555	0.41	-3.0
1,209,401	-		MMJJ_RS06555	0.41	+1.3
1,209,401	-		MMJJ_RS06555	0.41	-2.7
1,209,401	-		MMJJ_RS06555	0.41	-2.2
1,209,401	-		MMJJ_RS06555	0.41	-3.3
1,209,402	+		MMJJ_RS06555	0.41	+0.2
1,209,402	+		MMJJ_RS06555	0.41	-2.9
1,209,402	+		MMJJ_RS06555	0.41	-0.5
1,209,402	+		MMJJ_RS06555	0.41	+0.5
1,209,443	-		MMJJ_RS06555	0.46	-2.3
1,209,443	-		MMJJ_RS06555	0.46	+0.9
1,209,443	-		MMJJ_RS06555	0.46	+0.4
1,209,443	-		MMJJ_RS06555	0.46	-0.0
1,209,443	-		MMJJ_RS06555	0.46	+0.2
1,209,444	+		MMJJ_RS06555	0.46	-3.4
1,209,503	-		MMJJ_RS06555	0.52	-1.6
1,209,503	-		MMJJ_RS06555	0.52	-0.7
1,209,515	-		MMJJ_RS06555	0.53	-1.5
1,209,515	-		MMJJ_RS06555	0.53	-0.1
1,209,516	+		MMJJ_RS06555	0.54	+0.5
1,209,516	+		MMJJ_RS06555	0.54	+0.5
1,209,545	-		MMJJ_RS06555	0.57	-2.2
1,209,545	-		MMJJ_RS06555	0.57	-2.9
1,209,546	+		MMJJ_RS06555	0.57	-3.3
1,209,546	+		MMJJ_RS06555	0.57	-1.7
1,209,563	-		MMJJ_RS06555	0.59	-1.9
1,209,563	-		MMJJ_RS06555	0.59	+1.3
1,209,563	-		MMJJ_RS06555	0.59	-1.3
1,209,564	+		MMJJ_RS06555	0.59	-1.7
1,209,630	+		MMJJ_RS06555	0.66	+0.5
1,209,657	-		MMJJ_RS06555	0.69	+1.6
1,209,681	+		MMJJ_RS06555	0.71	+1.0
1,209,705	-		MMJJ_RS06555	0.74	-0.2
1,209,707	-		MMJJ_RS06555	0.74	-1.4
1,209,708	+		MMJJ_RS06555	0.74	+1.2
1,209,749	-		MMJJ_RS06555	0.78	-1.7
1,209,750	+		MMJJ_RS06555	0.78	+0.2
1,209,812	-		MMJJ_RS06555	0.85	-0.2
1,209,846	-		MMJJ_RS06555	0.89	-0.0
1,209,847	+		MMJJ_RS06555	0.89	-4.0
1,209,900	-				+1.9
1,209,901	+				+2.3
1,209,910	+				+0.8
1,209,910	+				-2.5
1,209,910	+				+2.1
1,209,910	+				-0.0
1,209,919	+				+0.1
1,209,921	-				+1.2
1,209,921	-				+2.8
1,209,921	-				-0.7
1,209,922	+				+1.0
1,209,922	+				+2.3
1,209,925	-				-1.8
1,209,925	-				+0.4
1,209,926	+				-1.5
1,209,949	-				-2.9
1,209,949	-				+0.1
1,209,954	-				+1.4
1,209,961	+				+0.5
1,209,971	+				+0.7
1,209,975	-				-3.0
1,209,976	+				-0.2
1,210,004	-				+0.5
1,210,019	-				+2.1
1,210,020	+				+1.1
1,210,020	+				+1.4
1,210,039	-				-0.7
1,210,040	+				-0.2
1,210,040	+				+1.1
1,210,042	-				+1.3
1,210,043	+				+1.5
1,210,051	-				-1.8
1,210,060	-				+0.0
1,210,061	+				+0.4
1,210,061	+				-2.3
1,210,061	+				-0.3
1,210,066	-				+1.0
1,210,067	+				-0.7
1,210,067	+				-0.0
1,210,092	+				-3.2
1,210,101	-				+2.6
1,210,102	+				-2.0
1,210,129	+				-0.1
1,210,147	+				-2.5
1,210,154	-				+1.5
1,210,191	+		MMJJ_RS06560	0.12	+0.6
1,210,191	+				-0.5
1,210,194	-		MMJJ_RS06560	0.13	+1.8
1,210,194	-		MMJJ_RS06560	0.13	+1.8
1,210,194	-		MMJJ_RS06560	0.13	-0.5
1,210,194	-		MMJJ_RS06560	0.13	-1.5
1,210,195	+		MMJJ_RS06560	0.13	+1.3
1,210,195	+		MMJJ_RS06560	0.13	+0.7
1,210,199	-		MMJJ_RS06560	0.14	-2.7
1,210,199	-		MMJJ_RS06560	0.14	-2.9
1,210,199	-		MMJJ_RS06560	0.14	-1.3
1,210,200	+		MMJJ_RS06560	0.14	+2.0
1,210,230	-		MMJJ_RS06560	0.19	-1.3
1,210,231	+		MMJJ_RS06560	0.19	-0.8
1,210,270	+		MMJJ_RS06560	0.25	-0.0
1,210,270	+		MMJJ_RS06560	0.25	+0.4
1,210,357	-		MMJJ_RS06560	0.40	-1.6
1,210,357	-		MMJJ_RS06560	0.40	-0.7
1,210,358	+		MMJJ_RS06560	0.40	+0.3
1,210,391	-		MMJJ_RS06560	0.45	-0.8
1,210,391	-		MMJJ_RS06560	0.45	-2.4
1,210,392	+		MMJJ_RS06560	0.46	+0.7
1,210,392	+		MMJJ_RS06560	0.46	+1.2
1,210,404	-		MMJJ_RS06560	0.48	-0.5
1,210,427	-		MMJJ_RS06560	0.51	-1.3
1,210,428	+		MMJJ_RS06560	0.52	-0.8
1,210,428	+		MMJJ_RS06560	0.52	+2.8
1,210,428	+		MMJJ_RS06560	0.52	-3.0
1,210,428	+		MMJJ_RS06560	0.52	-2.2
1,210,428	+		MMJJ_RS06560	0.52	-2.2
1,210,428	+		MMJJ_RS06560	0.52	+0.4
1,210,429	-		MMJJ_RS06560	0.52	-1.7
1,210,429	-		MMJJ_RS06560	0.52	-2.5
1,210,429	-		MMJJ_RS06560	0.52	+1.5
1,210,429	-		MMJJ_RS06560	0.52	+2.7
1,210,430	+		MMJJ_RS06560	0.52	-2.5
1,210,430	+		MMJJ_RS06560	0.52	-0.1
1,210,430	+		MMJJ_RS06560	0.52	+1.1
1,210,430	+		MMJJ_RS06560	0.52	+2.2
1,210,430	+		MMJJ_RS06560	0.52	-2.4
1,210,430	+		MMJJ_RS06560	0.52	+2.4
1,210,430	+		MMJJ_RS06560	0.52	+0.5
1,210,430	+		MMJJ_RS06560	0.52	-0.9
1,210,430	+		MMJJ_RS06560	0.52	+1.0
1,210,431	-		MMJJ_RS06560	0.52	-1.6
1,210,432	+		MMJJ_RS06560	0.52	+1.6
1,210,432	+		MMJJ_RS06560	0.52	+2.3
1,210,432	+		MMJJ_RS06560	0.52	+2.3
1,210,445	+		MMJJ_RS06560	0.54	+1.9
1,210,449	+		MMJJ_RS06560	0.55	+0.5
1,210,492	+		MMJJ_RS06560	0.62	+1.5
1,210,497	-		MMJJ_RS06560	0.63	+1.0
1,210,497	-		MMJJ_RS06560	0.63	-1.0
1,210,498	+		MMJJ_RS06560	0.63	-0.8
1,210,542	+		MMJJ_RS06560	0.70	+0.7
1,210,542	+		MMJJ_RS06560	0.70	+2.6
1,210,543	-		MMJJ_RS06560	0.71	+1.2
1,210,543	-		MMJJ_RS06560	0.71	+0.4
1,210,544	+		MMJJ_RS06560	0.71	+3.5
1,210,546	-		MMJJ_RS06560	0.71	-2.5
1,210,546	-		MMJJ_RS06560	0.71	+1.6
1,210,547	+		MMJJ_RS06560	0.71	-1.7
1,210,547	+		MMJJ_RS06560	0.71	+1.1
1,210,558	-		MMJJ_RS06560	0.73	-0.3
1,210,559	+		MMJJ_RS06560	0.73	+3.2
1,210,594	+		MMJJ_RS06560	0.79	-3.5
1,210,596	+		MMJJ_RS06560	0.79	-3.0
1,210,625	-		MMJJ_RS06560	0.84	-1.0
1,210,625	-		MMJJ_RS06560	0.84	+0.6
1,210,627	-		MMJJ_RS06560	0.85	+2.3
1,210,628	+		MMJJ_RS06560	0.85	-0.5
1,210,628	+		MMJJ_RS06560	0.85	-3.0
1,210,667	-				+1.1
1,210,667	-				-1.5
1,210,682	-				-0.5
1,210,683	+				-0.4
1,210,701	+				-2.7
1,210,703	-				+3.9
1,210,703	-				+3.1
1,210,704	+				-0.3
1,210,823	-		MMJJ_RS06565	0.13	-0.4
1,210,824	+		MMJJ_RS06565	0.13	-0.2
1,210,824	+		MMJJ_RS06565	0.13	-1.3
1,210,871	-		MMJJ_RS06565	0.20	-0.4
1,210,871	-		MMJJ_RS06565	0.20	-1.8
1,210,872	+		MMJJ_RS06565	0.20	-1.0
1,210,937	+		MMJJ_RS06565	0.30	-3.1