Experiment: McCas_formate_complete 3-nitroxypropanol 0.00208333333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03735 and MMJJ_RS03740 are separated by 5 nucleotides MMJJ_RS03740 and MMJJ_RS03745 are separated by 46 nucleotides MMJJ_RS03745 and MMJJ_RS03750 are separated by 65 nucleotides
MMJJ_RS03735: MMJJ_RS03735 - 2-oxoacid:acceptor oxidoreductase subunit alpha, at 696,577 to 698,289
_RS03735
MMJJ_RS03740: MMJJ_RS03740 - thiamine pyrophosphate-dependent enzyme, at 698,295 to 699,155
_RS03740
MMJJ_RS03745: MMJJ_RS03745 - N-glycosylase/DNA lyase, at 699,202 to 699,960
_RS03745
MMJJ_RS03750: MMJJ_RS03750 - rubredoxin, at 700,026 to 700,163
_RS03750
Position (kb) 698
699
700 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 697.311 kb on - strand, within MMJJ_RS03735 at 697.311 kb on - strand, within MMJJ_RS03735 at 697.316 kb on - strand, within MMJJ_RS03735 at 697.317 kb on + strand, within MMJJ_RS03735 at 697.350 kb on - strand, within MMJJ_RS03735 at 697.350 kb on - strand, within MMJJ_RS03735 at 697.392 kb on - strand, within MMJJ_RS03735 at 697.392 kb on - strand, within MMJJ_RS03735 at 697.396 kb on + strand, within MMJJ_RS03735 at 697.470 kb on + strand, within MMJJ_RS03735 at 697.471 kb on - strand, within MMJJ_RS03735 at 697.471 kb on - strand, within MMJJ_RS03735 at 697.532 kb on - strand, within MMJJ_RS03735 at 697.570 kb on + strand, within MMJJ_RS03735 at 697.575 kb on - strand, within MMJJ_RS03735 at 697.578 kb on + strand, within MMJJ_RS03735 at 697.578 kb on + strand, within MMJJ_RS03735 at 697.614 kb on + strand, within MMJJ_RS03735 at 697.679 kb on + strand, within MMJJ_RS03735 at 697.693 kb on - strand, within MMJJ_RS03735 at 697.761 kb on + strand, within MMJJ_RS03735 at 697.872 kb on - strand, within MMJJ_RS03735 at 697.876 kb on + strand, within MMJJ_RS03735 at 697.929 kb on + strand, within MMJJ_RS03735 at 697.935 kb on + strand, within MMJJ_RS03735 at 697.981 kb on - strand, within MMJJ_RS03735 at 698.017 kb on - strand, within MMJJ_RS03735 at 698.025 kb on + strand, within MMJJ_RS03735 at 698.058 kb on - strand, within MMJJ_RS03735 at 698.059 kb on + strand, within MMJJ_RS03735 at 698.142 kb on - strand at 698.142 kb on - strand at 698.151 kb on + strand at 698.212 kb on + strand at 698.214 kb on - strand at 698.220 kb on + strand at 698.329 kb on - strand at 698.329 kb on - strand at 698.330 kb on + strand at 698.333 kb on - strand at 698.334 kb on + strand at 698.334 kb on + strand at 698.334 kb on + strand at 698.357 kb on - strand at 698.358 kb on + strand at 698.369 kb on + strand at 698.466 kb on - strand, within MMJJ_RS03740 at 698.466 kb on - strand, within MMJJ_RS03740 at 698.470 kb on - strand, within MMJJ_RS03740 at 698.470 kb on - strand, within MMJJ_RS03740 at 698.477 kb on + strand, within MMJJ_RS03740 at 698.550 kb on + strand, within MMJJ_RS03740 at 698.583 kb on - strand, within MMJJ_RS03740 at 698.583 kb on - strand, within MMJJ_RS03740 at 698.583 kb on - strand, within MMJJ_RS03740 at 698.583 kb on - strand, within MMJJ_RS03740 at 698.583 kb on - strand, within MMJJ_RS03740 at 698.583 kb on - strand, within MMJJ_RS03740 at 698.583 kb on - strand, within MMJJ_RS03740 at 698.583 kb on - strand, within MMJJ_RS03740 at 698.584 kb on + strand, within MMJJ_RS03740 at 698.584 kb on + strand, within MMJJ_RS03740 at 698.584 kb on + strand, within MMJJ_RS03740 at 698.584 kb on + strand, within MMJJ_RS03740 at 698.644 kb on - strand, within MMJJ_RS03740 at 698.645 kb on + strand, within MMJJ_RS03740 at 698.645 kb on + strand, within MMJJ_RS03740 at 698.655 kb on + strand, within MMJJ_RS03740 at 698.662 kb on - strand, within MMJJ_RS03740 at 698.663 kb on + strand, within MMJJ_RS03740 at 698.663 kb on + strand, within MMJJ_RS03740 at 698.663 kb on + strand, within MMJJ_RS03740 at 698.663 kb on + strand, within MMJJ_RS03740 at 698.665 kb on + strand, within MMJJ_RS03740 at 698.780 kb on + strand, within MMJJ_RS03740 at 698.839 kb on - strand, within MMJJ_RS03740 at 698.844 kb on + strand, within MMJJ_RS03740 at 698.872 kb on - strand, within MMJJ_RS03740 at 698.875 kb on - strand, within MMJJ_RS03740 at 698.879 kb on - strand, within MMJJ_RS03740 at 698.879 kb on - strand, within MMJJ_RS03740 at 698.879 kb on - strand, within MMJJ_RS03740 at 698.912 kb on + strand, within MMJJ_RS03740 at 698.928 kb on - strand, within MMJJ_RS03740 at 698.965 kb on - strand, within MMJJ_RS03740 at 698.965 kb on - strand, within MMJJ_RS03740 at 698.966 kb on + strand, within MMJJ_RS03740 at 698.966 kb on + strand, within MMJJ_RS03740 at 698.969 kb on - strand, within MMJJ_RS03740 at 699.030 kb on - strand, within MMJJ_RS03740 at 699.072 kb on - strand at 699.073 kb on + strand at 699.073 kb on + strand at 699.157 kb on + strand at 699.167 kb on - strand at 699.167 kb on - strand at 699.167 kb on - strand at 699.168 kb on + strand at 699.168 kb on + strand at 699.168 kb on + strand at 699.171 kb on - strand at 699.179 kb on - strand at 699.240 kb on + strand at 699.267 kb on - strand at 699.271 kb on - strand at 699.271 kb on - strand at 699.271 kb on - strand at 699.271 kb on - strand at 699.271 kb on - strand at 699.272 kb on + strand at 699.272 kb on + strand at 699.272 kb on + strand at 699.272 kb on + strand at 699.378 kb on + strand, within MMJJ_RS03745 at 699.378 kb on + strand, within MMJJ_RS03745 at 699.378 kb on + strand, within MMJJ_RS03745 at 699.378 kb on + strand, within MMJJ_RS03745 at 699.378 kb on + strand, within MMJJ_RS03745 at 699.383 kb on + strand, within MMJJ_RS03745 at 699.389 kb on - strand, within MMJJ_RS03745 at 699.389 kb on - strand, within MMJJ_RS03745 at 699.389 kb on - strand, within MMJJ_RS03745 at 699.390 kb on + strand, within MMJJ_RS03745 at 699.390 kb on + strand, within MMJJ_RS03745 at 699.390 kb on + strand, within MMJJ_RS03745 at 699.390 kb on + strand, within MMJJ_RS03745 at 699.390 kb on + strand, within MMJJ_RS03745 at 699.393 kb on - strand, within MMJJ_RS03745 at 699.394 kb on + strand, within MMJJ_RS03745 at 699.453 kb on - strand, within MMJJ_RS03745 at 699.476 kb on + strand, within MMJJ_RS03745 at 699.519 kb on + strand, within MMJJ_RS03745 at 699.524 kb on - strand, within MMJJ_RS03745 at 699.525 kb on + strand, within MMJJ_RS03745 at 699.525 kb on + strand, within MMJJ_RS03745 at 699.691 kb on - strand, within MMJJ_RS03745 at 699.773 kb on + strand, within MMJJ_RS03745 at 699.773 kb on + strand, within MMJJ_RS03745 at 699.849 kb on + strand, within MMJJ_RS03745 at 699.854 kb on - strand, within MMJJ_RS03745 at 699.855 kb on + strand, within MMJJ_RS03745 at 699.866 kb on - strand, within MMJJ_RS03745 at 699.935 kb on + strand at 699.938 kb on - strand at 699.939 kb on + strand at 699.939 kb on + strand at 699.942 kb on - strand at 699.956 kb on - strand at 699.957 kb on + strand at 699.964 kb on + strand at 699.977 kb on - strand at 699.979 kb on - strand at 699.980 kb on + strand at 700.004 kb on - strand at 700.019 kb on + strand at 700.025 kb on - strand at 700.026 kb on + strand at 700.049 kb on + strand, within MMJJ_RS03750 at 700.057 kb on + strand, within MMJJ_RS03750 at 700.060 kb on - strand, within MMJJ_RS03750 at 700.060 kb on - strand, within MMJJ_RS03750 at 700.060 kb on - strand at 700.060 kb on - strand, within MMJJ_RS03750 at 700.060 kb on - strand, within MMJJ_RS03750 at 700.060 kb on - strand, within MMJJ_RS03750 at 700.060 kb on - strand, within MMJJ_RS03750 at 700.060 kb on - strand, within MMJJ_RS03750 at 700.060 kb on - strand, within MMJJ_RS03750 at 700.060 kb on - strand, within MMJJ_RS03750 at 700.060 kb on - strand, within MMJJ_RS03750 at 700.060 kb on - strand, within MMJJ_RS03750 at 700.060 kb on - strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand at 700.061 kb on + strand, within MMJJ_RS03750 at 700.062 kb on - strand, within MMJJ_RS03750 at 700.062 kb on - strand, within MMJJ_RS03750 at 700.062 kb on - strand, within MMJJ_RS03750 at 700.063 kb on + strand, within MMJJ_RS03750
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete 3-nitroxypropanol 0.00208333333333333 mM remove 697,311 - MMJJ_RS03735 0.43 -2.5 697,311 - MMJJ_RS03735 0.43 -1.9 697,316 - MMJJ_RS03735 0.43 -1.9 697,317 + MMJJ_RS03735 0.43 +1.4 697,350 - MMJJ_RS03735 0.45 +1.6 697,350 - MMJJ_RS03735 0.45 +2.6 697,392 - MMJJ_RS03735 0.48 +3.1 697,392 - MMJJ_RS03735 0.48 +0.3 697,396 + MMJJ_RS03735 0.48 +0.6 697,470 + MMJJ_RS03735 0.52 -0.8 697,471 - MMJJ_RS03735 0.52 -0.6 697,471 - MMJJ_RS03735 0.52 +0.8 697,532 - MMJJ_RS03735 0.56 +1.7 697,570 + MMJJ_RS03735 0.58 -0.3 697,575 - MMJJ_RS03735 0.58 +1.7 697,578 + MMJJ_RS03735 0.58 -2.1 697,578 + MMJJ_RS03735 0.58 -1.3 697,614 + MMJJ_RS03735 0.61 -1.3 697,679 + MMJJ_RS03735 0.64 +0.8 697,693 - MMJJ_RS03735 0.65 -1.8 697,761 + MMJJ_RS03735 0.69 +1.0 697,872 - MMJJ_RS03735 0.76 -1.3 697,876 + MMJJ_RS03735 0.76 +2.4 697,929 + MMJJ_RS03735 0.79 -2.0 697,935 + MMJJ_RS03735 0.79 -1.4 697,981 - MMJJ_RS03735 0.82 -3.1 698,017 - MMJJ_RS03735 0.84 +2.7 698,025 + MMJJ_RS03735 0.85 +0.9 698,058 - MMJJ_RS03735 0.86 +0.9 698,059 + MMJJ_RS03735 0.87 +1.6 698,142 - -1.3 698,142 - +1.5 698,151 + -1.3 698,212 + -0.1 698,214 - -0.2 698,220 + -1.5 698,329 - -0.9 698,329 - -0.1 698,330 + -0.2 698,333 - -0.3 698,334 + -2.5 698,334 + -2.8 698,334 + -1.1 698,357 - -2.1 698,358 + +0.5 698,369 + +0.0 698,466 - MMJJ_RS03740 0.20 -1.3 698,466 - MMJJ_RS03740 0.20 +1.9 698,470 - MMJJ_RS03740 0.20 -1.6 698,470 - MMJJ_RS03740 0.20 +2.6 698,477 + MMJJ_RS03740 0.21 +1.2 698,550 + MMJJ_RS03740 0.30 +3.0 698,583 - MMJJ_RS03740 0.33 +0.0 698,583 - MMJJ_RS03740 0.33 +3.2 698,583 - MMJJ_RS03740 0.33 +1.7 698,583 - MMJJ_RS03740 0.33 +4.0 698,583 - MMJJ_RS03740 0.33 +2.6 698,583 - MMJJ_RS03740 0.33 -2.6 698,583 - MMJJ_RS03740 0.33 -0.2 698,583 - MMJJ_RS03740 0.33 +2.0 698,584 + MMJJ_RS03740 0.34 +0.1 698,584 + MMJJ_RS03740 0.34 +0.7 698,584 + MMJJ_RS03740 0.34 -1.5 698,584 + MMJJ_RS03740 0.34 +0.5 698,644 - MMJJ_RS03740 0.41 -0.1 698,645 + MMJJ_RS03740 0.41 +2.3 698,645 + MMJJ_RS03740 0.41 +1.2 698,655 + MMJJ_RS03740 0.42 +1.3 698,662 - MMJJ_RS03740 0.43 -1.2 698,663 + MMJJ_RS03740 0.43 -1.7 698,663 + MMJJ_RS03740 0.43 +1.4 698,663 + MMJJ_RS03740 0.43 -0.5 698,663 + MMJJ_RS03740 0.43 +0.9 698,665 + MMJJ_RS03740 0.43 -3.1 698,780 + MMJJ_RS03740 0.56 +0.9 698,839 - MMJJ_RS03740 0.63 +0.4 698,844 + MMJJ_RS03740 0.64 -2.2 698,872 - MMJJ_RS03740 0.67 +0.5 698,875 - MMJJ_RS03740 0.67 -3.4 698,879 - MMJJ_RS03740 0.68 -0.8 698,879 - MMJJ_RS03740 0.68 +3.2 698,879 - MMJJ_RS03740 0.68 -3.1 698,912 + MMJJ_RS03740 0.72 +1.4 698,928 - MMJJ_RS03740 0.74 +0.8 698,965 - MMJJ_RS03740 0.78 -2.4 698,965 - MMJJ_RS03740 0.78 +0.1 698,966 + MMJJ_RS03740 0.78 +2.4 698,966 + MMJJ_RS03740 0.78 +2.6 698,969 - MMJJ_RS03740 0.78 +2.2 699,030 - MMJJ_RS03740 0.85 -2.2 699,072 - +2.6 699,073 + +2.6 699,073 + +2.2 699,157 + +0.7 699,167 - -1.1 699,167 - -0.1 699,167 - +0.5 699,168 + -3.8 699,168 + +1.0 699,168 + -1.7 699,171 - +2.0 699,179 - +0.3 699,240 + -2.6 699,267 - -0.8 699,271 - -3.8 699,271 - -0.1 699,271 - -3.6 699,271 - -2.5 699,271 - -1.0 699,272 + +2.0 699,272 + +1.2 699,272 + -2.7 699,272 + -0.2 699,378 + MMJJ_RS03745 0.23 -1.3 699,378 + MMJJ_RS03745 0.23 +1.9 699,378 + MMJJ_RS03745 0.23 -1.0 699,378 + MMJJ_RS03745 0.23 -2.2 699,378 + MMJJ_RS03745 0.23 -1.3 699,383 + MMJJ_RS03745 0.24 +1.1 699,389 - MMJJ_RS03745 0.25 -1.1 699,389 - MMJJ_RS03745 0.25 +1.1 699,389 - MMJJ_RS03745 0.25 -1.4 699,390 + MMJJ_RS03745 0.25 -0.3 699,390 + MMJJ_RS03745 0.25 +2.3 699,390 + MMJJ_RS03745 0.25 +2.8 699,390 + MMJJ_RS03745 0.25 -3.4 699,390 + MMJJ_RS03745 0.25 -1.0 699,393 - MMJJ_RS03745 0.25 +0.3 699,394 + MMJJ_RS03745 0.25 +1.7 699,453 - MMJJ_RS03745 0.33 +0.4 699,476 + MMJJ_RS03745 0.36 -3.9 699,519 + MMJJ_RS03745 0.42 -1.1 699,524 - MMJJ_RS03745 0.42 -2.4 699,525 + MMJJ_RS03745 0.43 -0.9 699,525 + MMJJ_RS03745 0.43 +1.7 699,691 - MMJJ_RS03745 0.64 -2.7 699,773 + MMJJ_RS03745 0.75 -0.6 699,773 + MMJJ_RS03745 0.75 -3.0 699,849 + MMJJ_RS03745 0.85 -2.8 699,854 - MMJJ_RS03745 0.86 +2.0 699,855 + MMJJ_RS03745 0.86 +0.4 699,866 - MMJJ_RS03745 0.87 +0.7 699,935 + -1.3 699,938 - +0.7 699,939 + -2.1 699,939 + +2.0 699,942 - +2.2 699,956 - +0.1 699,957 + +0.6 699,964 + +2.3 699,977 - -0.1 699,979 - +1.3 699,980 + +3.0 700,004 - +1.4 700,019 + +1.4 700,025 - +3.1 700,026 + +4.2 700,049 + MMJJ_RS03750 0.17 -2.1 700,057 + MMJJ_RS03750 0.22 +1.1 700,060 - MMJJ_RS03750 0.25 +0.2 700,060 - MMJJ_RS03750 0.25 -0.1 700,060 - +0.5 700,060 - MMJJ_RS03750 0.25 +2.3 700,060 - MMJJ_RS03750 0.25 -0.1 700,060 - MMJJ_RS03750 0.25 +0.5 700,060 - MMJJ_RS03750 0.25 -2.1 700,060 - MMJJ_RS03750 0.25 -0.7 700,060 - MMJJ_RS03750 0.25 +1.6 700,060 - MMJJ_RS03750 0.25 +2.0 700,060 - MMJJ_RS03750 0.25 -1.8 700,060 - MMJJ_RS03750 0.25 -0.5 700,060 - MMJJ_RS03750 0.25 -1.3 700,061 + MMJJ_RS03750 0.25 -0.5 700,061 + MMJJ_RS03750 0.25 +0.1 700,061 + MMJJ_RS03750 0.25 -2.1 700,061 + MMJJ_RS03750 0.25 +0.6 700,061 + MMJJ_RS03750 0.25 -0.1 700,061 + MMJJ_RS03750 0.25 -0.2 700,061 + MMJJ_RS03750 0.25 +2.2 700,061 + MMJJ_RS03750 0.25 -1.6 700,061 + MMJJ_RS03750 0.25 +1.1 700,061 + MMJJ_RS03750 0.25 -2.6 700,061 + MMJJ_RS03750 0.25 +2.2 700,061 + MMJJ_RS03750 0.25 +1.8 700,061 + MMJJ_RS03750 0.25 -1.1 700,061 + MMJJ_RS03750 0.25 -1.2 700,061 + -0.1 700,061 + MMJJ_RS03750 0.25 +1.3 700,062 - MMJJ_RS03750 0.26 -0.2 700,062 - MMJJ_RS03750 0.26 -3.6 700,062 - MMJJ_RS03750 0.26 +1.6 700,063 + MMJJ_RS03750 0.27 -2.6
Or see this region's nucleotide sequence