Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00320

Experiment: McCas_formate_complete 3-nitroxypropanol 0.00208333333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS00315 and MMJJ_RS00320 are separated by 16 nucleotidesMMJJ_RS00320 and MMJJ_RS00325 are separated by 10 nucleotides MMJJ_RS00315: MMJJ_RS00315 - methyl-accepting chemotaxis protein, at 59,453 to 60,856 _RS00315 MMJJ_RS00320: MMJJ_RS00320 - chemotaxis protein CheD, at 60,873 to 61,337 _RS00320 MMJJ_RS00325: MMJJ_RS00325 - chemotaxis protein CheA, at 61,348 to 64,110 _RS00325 Position (kb) 60 61 62Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 59.884 kb on - strand, within MMJJ_RS00315at 59.990 kb on + strand, within MMJJ_RS00315at 60.076 kb on - strand, within MMJJ_RS00315at 60.154 kb on - strand, within MMJJ_RS00315at 60.203 kb on + strand, within MMJJ_RS00315at 60.222 kb on + strand, within MMJJ_RS00315at 60.311 kb on - strand, within MMJJ_RS00315at 60.312 kb on + strand, within MMJJ_RS00315at 60.312 kb on + strand, within MMJJ_RS00315at 60.347 kb on - strand, within MMJJ_RS00315at 60.367 kb on - strand, within MMJJ_RS00315at 60.395 kb on - strand, within MMJJ_RS00315at 60.396 kb on + strand, within MMJJ_RS00315at 60.398 kb on - strand, within MMJJ_RS00315at 60.399 kb on + strand, within MMJJ_RS00315at 60.416 kb on - strand, within MMJJ_RS00315at 60.417 kb on + strand, within MMJJ_RS00315at 60.417 kb on + strand, within MMJJ_RS00315at 60.417 kb on + strand, within MMJJ_RS00315at 60.430 kb on - strand, within MMJJ_RS00315at 60.430 kb on - strand, within MMJJ_RS00315at 60.432 kb on - strand, within MMJJ_RS00315at 60.432 kb on - strand, within MMJJ_RS00315at 60.433 kb on + strand, within MMJJ_RS00315at 60.433 kb on + strand, within MMJJ_RS00315at 60.433 kb on + strand, within MMJJ_RS00315at 60.439 kb on - strand, within MMJJ_RS00315at 60.476 kb on - strand, within MMJJ_RS00315at 60.488 kb on - strand, within MMJJ_RS00315at 60.574 kb on - strand, within MMJJ_RS00315at 60.630 kb on + strand, within MMJJ_RS00315at 60.659 kb on - strand, within MMJJ_RS00315at 60.673 kb on + strand, within MMJJ_RS00315at 60.689 kb on - strand, within MMJJ_RS00315at 60.689 kb on - strand, within MMJJ_RS00315at 60.689 kb on - strand, within MMJJ_RS00315at 60.689 kb on - strand, within MMJJ_RS00315at 60.690 kb on + strand, within MMJJ_RS00315at 60.690 kb on + strand, within MMJJ_RS00315at 60.690 kb on + strand, within MMJJ_RS00315at 60.707 kb on + strand, within MMJJ_RS00315at 60.727 kb on - strandat 60.774 kb on + strandat 60.774 kb on + strandat 60.774 kb on + strandat 60.774 kb on + strandat 60.824 kb on - strandat 60.825 kb on + strandat 60.856 kb on - strandat 60.860 kb on - strandat 60.860 kb on - strandat 60.860 kb on - strandat 60.861 kb on + strandat 60.861 kb on + strandat 60.868 kb on - strandat 60.868 kb on - strandat 60.870 kb on - strandat 60.870 kb on - strandat 60.870 kb on - strandat 60.871 kb on + strandat 60.874 kb on - strandat 60.874 kb on - strandat 60.874 kb on - strandat 60.877 kb on + strandat 60.877 kb on + strandat 60.879 kb on + strandat 60.879 kb on + strandat 60.879 kb on + strandat 60.879 kb on + strandat 60.903 kb on + strandat 60.923 kb on - strand, within MMJJ_RS00320at 60.931 kb on + strand, within MMJJ_RS00320at 60.936 kb on - strand, within MMJJ_RS00320at 60.938 kb on - strand, within MMJJ_RS00320at 60.939 kb on + strand, within MMJJ_RS00320at 60.952 kb on - strand, within MMJJ_RS00320at 60.953 kb on + strand, within MMJJ_RS00320at 60.981 kb on - strand, within MMJJ_RS00320at 61.039 kb on + strand, within MMJJ_RS00320at 61.043 kb on - strand, within MMJJ_RS00320at 61.207 kb on + strand, within MMJJ_RS00320at 61.243 kb on - strand, within MMJJ_RS00320at 61.244 kb on + strand, within MMJJ_RS00320at 61.396 kb on - strandat 61.397 kb on + strandat 61.402 kb on + strandat 61.456 kb on - strandat 61.456 kb on - strandat 61.456 kb on - strandat 61.522 kb on - strandat 61.523 kb on + strandat 61.523 kb on + strandat 61.529 kb on - strandat 61.529 kb on - strandat 61.530 kb on + strandat 61.561 kb on + strandat 61.596 kb on - strandat 61.662 kb on - strand, within MMJJ_RS00325at 61.662 kb on - strand, within MMJJ_RS00325at 61.662 kb on - strand, within MMJJ_RS00325at 61.663 kb on + strand, within MMJJ_RS00325at 61.694 kb on - strand, within MMJJ_RS00325at 61.694 kb on - strand, within MMJJ_RS00325at 61.695 kb on + strand, within MMJJ_RS00325at 61.695 kb on + strand, within MMJJ_RS00325at 61.698 kb on - strand, within MMJJ_RS00325at 61.699 kb on + strand, within MMJJ_RS00325at 61.709 kb on + strand, within MMJJ_RS00325at 61.718 kb on + strand, within MMJJ_RS00325at 61.729 kb on - strand, within MMJJ_RS00325at 61.730 kb on + strand, within MMJJ_RS00325at 61.763 kb on + strand, within MMJJ_RS00325at 61.797 kb on - strand, within MMJJ_RS00325at 61.980 kb on - strand, within MMJJ_RS00325at 62.019 kb on - strand, within MMJJ_RS00325at 62.023 kb on - strand, within MMJJ_RS00325at 62.023 kb on - strand, within MMJJ_RS00325at 62.024 kb on + strand, within MMJJ_RS00325at 62.026 kb on + strand, within MMJJ_RS00325at 62.028 kb on - strand, within MMJJ_RS00325at 62.029 kb on + strand, within MMJJ_RS00325at 62.032 kb on - strand, within MMJJ_RS00325at 62.032 kb on - strand, within MMJJ_RS00325at 62.032 kb on - strand, within MMJJ_RS00325at 62.033 kb on + strand, within MMJJ_RS00325at 62.037 kb on - strand, within MMJJ_RS00325at 62.038 kb on + strand, within MMJJ_RS00325at 62.038 kb on + strand, within MMJJ_RS00325at 62.060 kb on + strand, within MMJJ_RS00325at 62.065 kb on - strand, within MMJJ_RS00325at 62.095 kb on - strand, within MMJJ_RS00325at 62.096 kb on + strand, within MMJJ_RS00325at 62.096 kb on + strand, within MMJJ_RS00325at 62.152 kb on - strand, within MMJJ_RS00325at 62.272 kb on + strand, within MMJJ_RS00325at 62.279 kb on + strand, within MMJJ_RS00325at 62.312 kb on + strand, within MMJJ_RS00325

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete 3-nitroxypropanol 0.00208333333333333 mM
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59,884 - MMJJ_RS00315 0.31 -1.6
59,990 + MMJJ_RS00315 0.38 -0.4
60,076 - MMJJ_RS00315 0.44 -2.9
60,154 - MMJJ_RS00315 0.50 -0.8
60,203 + MMJJ_RS00315 0.53 +2.2
60,222 + MMJJ_RS00315 0.55 -1.4
60,311 - MMJJ_RS00315 0.61 -1.6
60,312 + MMJJ_RS00315 0.61 -1.5
60,312 + MMJJ_RS00315 0.61 -4.1
60,347 - MMJJ_RS00315 0.64 -0.9
60,367 - MMJJ_RS00315 0.65 -1.1
60,395 - MMJJ_RS00315 0.67 -3.1
60,396 + MMJJ_RS00315 0.67 -1.6
60,398 - MMJJ_RS00315 0.67 +2.4
60,399 + MMJJ_RS00315 0.67 -3.1
60,416 - MMJJ_RS00315 0.69 -0.7
60,417 + MMJJ_RS00315 0.69 +1.2
60,417 + MMJJ_RS00315 0.69 +2.7
60,417 + MMJJ_RS00315 0.69 -2.9
60,430 - MMJJ_RS00315 0.70 -0.0
60,430 - MMJJ_RS00315 0.70 -0.3
60,432 - MMJJ_RS00315 0.70 -2.3
60,432 - MMJJ_RS00315 0.70 +1.2
60,433 + MMJJ_RS00315 0.70 -2.1
60,433 + MMJJ_RS00315 0.70 -0.6
60,433 + MMJJ_RS00315 0.70 -1.9
60,439 - MMJJ_RS00315 0.70 -2.8
60,476 - MMJJ_RS00315 0.73 -0.4
60,488 - MMJJ_RS00315 0.74 -0.7
60,574 - MMJJ_RS00315 0.80 +0.9
60,630 + MMJJ_RS00315 0.84 +1.3
60,659 - MMJJ_RS00315 0.86 -1.1
60,673 + MMJJ_RS00315 0.87 -0.0
60,689 - MMJJ_RS00315 0.88 -2.2
60,689 - MMJJ_RS00315 0.88 +1.8
60,689 - MMJJ_RS00315 0.88 +0.7
60,689 - MMJJ_RS00315 0.88 +0.7
60,690 + MMJJ_RS00315 0.88 +0.9
60,690 + MMJJ_RS00315 0.88 +2.9
60,690 + MMJJ_RS00315 0.88 -5.0
60,707 + MMJJ_RS00315 0.89 +0.1
60,727 - +2.9
60,774 + -0.3
60,774 + -1.2
60,774 + +2.0
60,774 + +2.0
60,824 - -1.7
60,825 + -3.6
60,856 - -0.3
60,860 - +2.4
60,860 - -0.6
60,860 - +0.5
60,861 + +0.9
60,861 + +0.7
60,868 - +0.7
60,868 - -0.3
60,870 - -0.7
60,870 - -1.1
60,870 - -1.8
60,871 + +0.3
60,874 - -1.3
60,874 - -2.1
60,874 - +1.4
60,877 + -3.3
60,877 + -0.7
60,879 + -1.8
60,879 + -0.4
60,879 + +2.5
60,879 + -1.7
60,903 + +2.5
60,923 - MMJJ_RS00320 0.11 +1.3
60,931 + MMJJ_RS00320 0.12 +2.5
60,936 - MMJJ_RS00320 0.14 -3.2
60,938 - MMJJ_RS00320 0.14 +1.9
60,939 + MMJJ_RS00320 0.14 +2.2
60,952 - MMJJ_RS00320 0.17 -2.9
60,953 + MMJJ_RS00320 0.17 +2.8
60,981 - MMJJ_RS00320 0.23 -0.6
61,039 + MMJJ_RS00320 0.36 +0.8
61,043 - MMJJ_RS00320 0.37 -2.7
61,207 + MMJJ_RS00320 0.72 -1.9
61,243 - MMJJ_RS00320 0.80 +1.9
61,244 + MMJJ_RS00320 0.80 -1.1
61,396 - +2.1
61,397 + -3.3
61,402 + -2.2
61,456 - -1.6
61,456 - -0.3
61,456 - +0.5
61,522 - +0.0
61,523 + -0.1
61,523 + +3.7
61,529 - +2.4
61,529 - +0.7
61,530 + +2.3
61,561 + +2.6
61,596 - -3.3
61,662 - MMJJ_RS00325 0.11 -0.4
61,662 - MMJJ_RS00325 0.11 +2.3
61,662 - MMJJ_RS00325 0.11 -0.1
61,663 + MMJJ_RS00325 0.11 -2.1
61,694 - MMJJ_RS00325 0.13 -2.9
61,694 - MMJJ_RS00325 0.13 +1.3
61,695 + MMJJ_RS00325 0.13 -1.3
61,695 + MMJJ_RS00325 0.13 +2.6
61,698 - MMJJ_RS00325 0.13 -0.2
61,699 + MMJJ_RS00325 0.13 +0.8
61,709 + MMJJ_RS00325 0.13 -1.3
61,718 + MMJJ_RS00325 0.13 +3.0
61,729 - MMJJ_RS00325 0.14 +4.5
61,730 + MMJJ_RS00325 0.14 -0.5
61,763 + MMJJ_RS00325 0.15 +0.5
61,797 - MMJJ_RS00325 0.16 +2.4
61,980 - MMJJ_RS00325 0.23 +1.6
62,019 - MMJJ_RS00325 0.24 +2.5
62,023 - MMJJ_RS00325 0.24 +1.9
62,023 - MMJJ_RS00325 0.24 +1.9
62,024 + MMJJ_RS00325 0.24 -3.7
62,026 + MMJJ_RS00325 0.25 +2.0
62,028 - MMJJ_RS00325 0.25 -3.1
62,029 + MMJJ_RS00325 0.25 -2.2
62,032 - MMJJ_RS00325 0.25 -0.1
62,032 - MMJJ_RS00325 0.25 +1.3
62,032 - MMJJ_RS00325 0.25 -4.1
62,033 + MMJJ_RS00325 0.25 +4.4
62,037 - MMJJ_RS00325 0.25 +1.4
62,038 + MMJJ_RS00325 0.25 +1.2
62,038 + MMJJ_RS00325 0.25 -0.9
62,060 + MMJJ_RS00325 0.26 +1.3
62,065 - MMJJ_RS00325 0.26 -0.7
62,095 - MMJJ_RS00325 0.27 +1.3
62,096 + MMJJ_RS00325 0.27 -3.3
62,096 + MMJJ_RS00325 0.27 -0.7
62,152 - MMJJ_RS00325 0.29 +2.7
62,272 + MMJJ_RS00325 0.33 -1.7
62,279 + MMJJ_RS00325 0.34 +0.8
62,312 + MMJJ_RS00325 0.35 -1.9

Or see this region's nucleotide sequence