Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS09370

Experiment: McCas_formate_complete silver chloride 0.125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete silver chloride 0.125 mM
1,539,973	+		MMJJ_RS08350	0.58	-2.9
1,539,990	+		MMJJ_RS08350	0.59	+1.7
1,540,174	+		MMJJ_RS08350	0.67	+0.7
1,540,252	+		MMJJ_RS08350	0.71	+0.6
1,540,311	-		MMJJ_RS08350	0.74	+1.9
1,540,311	-		MMJJ_RS08350	0.74	-0.0
1,540,311	-		MMJJ_RS08350	0.74	+0.8
1,540,311	-		MMJJ_RS08350	0.74	+0.2
1,540,312	+		MMJJ_RS08350	0.74	+2.1
1,540,312	+		MMJJ_RS08350	0.74	+0.1
1,540,312	+		MMJJ_RS08350	0.74	+0.0
1,540,312	+		MMJJ_RS08350	0.74	-1.5
1,540,312	+		MMJJ_RS08350	0.74	+2.2
1,540,312	+		MMJJ_RS08350	0.74	+1.2
1,540,312	+		MMJJ_RS08350	0.74	+2.6
1,540,315	-		MMJJ_RS08350	0.74	+0.6
1,540,316	+		MMJJ_RS08350	0.74	+0.5
1,540,320	+		MMJJ_RS08350	0.74	+2.4
1,540,347	-		MMJJ_RS08350	0.75	-2.6
1,540,355	-		MMJJ_RS08350	0.76	+0.6
1,540,356	+		MMJJ_RS08350	0.76	-0.2
1,540,368	+		MMJJ_RS08350	0.76	-0.3
1,540,368	+		MMJJ_RS08350	0.76	+0.2
1,540,412	-		MMJJ_RS08350	0.78	-2.5
1,540,412	-		MMJJ_RS08350	0.78	-0.2
1,540,412	-		MMJJ_RS08350	0.78	+0.9
1,540,413	+		MMJJ_RS08350	0.78	+0.6
1,540,413	+		MMJJ_RS08350	0.78	-0.2
1,540,413	+		MMJJ_RS08350	0.78	+0.3
1,540,413	+		MMJJ_RS08350	0.78	+1.4
1,540,414	-		MMJJ_RS08350	0.78	+0.9
1,540,414	-		MMJJ_RS08350	0.78	-0.8
1,540,414	-		MMJJ_RS08350	0.78	-0.5
1,540,414	-		MMJJ_RS08350	0.78	+0.4
1,540,414	-		MMJJ_RS08350	0.78	+2.5
1,540,414	-		MMJJ_RS08350	0.78	-2.3
1,540,414	-		MMJJ_RS08350	0.78	-2.7
1,540,415	+		MMJJ_RS08350	0.78	-1.2
1,540,415	+		MMJJ_RS08350	0.78	-0.4
1,540,415	+		MMJJ_RS08350	0.78	-1.6
1,540,415	+		MMJJ_RS08350	0.78	-0.7
1,540,415	+		MMJJ_RS08350	0.78	+0.2
1,540,415	+		MMJJ_RS08350	0.78	+1.4
1,540,415	+		MMJJ_RS08350	0.78	+1.5
1,540,415	+		MMJJ_RS08350	0.78	+1.7
1,540,415	+		MMJJ_RS08350	0.78	-1.1
1,540,415	+		MMJJ_RS08350	0.78	-1.5
1,540,415	+		MMJJ_RS08350	0.78	+1.3
1,540,415	+		MMJJ_RS08350	0.78	+0.3
1,540,438	-		MMJJ_RS08350	0.79	-0.8
1,540,442	-		MMJJ_RS08350	0.80	+0.6
1,540,443	+		MMJJ_RS08350	0.80	-2.9
1,540,443	+		MMJJ_RS08350	0.80	+0.4
1,540,443	+		MMJJ_RS08350	0.80	+0.9
1,540,510	-		MMJJ_RS08350	0.83	+0.7
1,540,511	+		MMJJ_RS08350	0.83	-0.8
1,540,554	+		MMJJ_RS08350	0.85	-1.2
1,540,570	-		MMJJ_RS08350	0.86	+0.2
1,540,570	-		MMJJ_RS08350	0.86	-0.4
1,540,571	+		MMJJ_RS08350	0.86	-2.4
1,540,571	+		MMJJ_RS08350	0.86	-0.4
1,540,574	-		MMJJ_RS08350	0.86	+0.8
1,540,574	-		MMJJ_RS08350	0.86	-1.3
1,540,574	-		MMJJ_RS08350	0.86	-1.7
1,540,574	-		MMJJ_RS08350	0.86	+0.3
1,540,575	+		MMJJ_RS08350	0.86	-0.6
1,540,575	+		MMJJ_RS08350	0.86	-0.7
1,540,589	-		MMJJ_RS08350	0.86	-0.5
1,540,589	-		MMJJ_RS08350	0.86	-2.4
1,540,590	+		MMJJ_RS08350	0.86	-0.8
1,540,657	+		MMJJ_RS08350	0.90	+0.4
1,540,699	+				-3.1
1,540,713	-				-1.2
1,540,757	-				-0.4
1,540,776	-				-3.0
1,540,788	-				-1.3
1,540,788	-				+2.9
1,540,788	-				+0.6
1,540,788	-				-2.5
1,540,789	+				+0.1
1,540,790	-				+0.1
1,540,790	-				-0.5
1,540,790	-				-1.5
1,540,791	+				+1.6
1,540,791	+				-0.0
1,540,811	-				-0.7
1,540,875	-				+1.3
1,540,883	-				-0.1
1,540,926	-		MMJJ_RS09370	0.12	-1.2
1,540,927	+		MMJJ_RS09370	0.13	-1.4
1,540,927	+		MMJJ_RS09370	0.13	-1.6
1,540,988	-		MMJJ_RS09370	0.41	-1.6
1,541,142	-				-1.2
1,541,143	+				-0.3
1,541,143	+				-1.4
1,541,147	+				+1.5
1,541,147	+				-3.0
1,541,147	+				-0.5
1,541,147	+				-1.0
1,541,148	-				-0.6
1,541,165	-				+3.1
1,541,168	+				+2.7
1,541,170	+				-1.8
1,541,182	-				-0.8
1,541,182	-				+2.1
1,541,183	+				-0.8
1,541,184	-				+3.8
1,541,185	+				+2.7
1,541,185	+				+0.5
1,541,185	+				+0.2
1,541,185	+				+0.8
1,541,193	-				+1.8
1,541,193	-				+1.2
1,541,194	+				+0.6
1,541,245	-				+0.9
1,541,246	+				+0.7
1,541,255	-				-0.0
1,541,256	+				-0.5
1,541,259	+				+0.5
1,541,302	+		MMJJ_RS08355	0.18	+1.7
1,541,348	-		MMJJ_RS08355	0.33	-1.9
1,541,355	-		MMJJ_RS08355	0.35	-1.0
1,541,356	+		MMJJ_RS08355	0.36	-2.1
1,541,406	+		MMJJ_RS08355	0.51	-1.2
1,541,454	-		MMJJ_RS08355	0.67	+1.2
1,541,492	+		MMJJ_RS08355	0.79	+0.2
1,541,496	-		MMJJ_RS08355	0.80	+2.6
1,541,496	-		MMJJ_RS08355	0.80	+0.7
1,541,496	-		MMJJ_RS08355	0.80	-0.5
1,541,496	-		MMJJ_RS08355	0.80	-2.5
1,541,496	-		MMJJ_RS08355	0.80	+1.0
1,541,496	-		MMJJ_RS08355	0.80	-1.6
1,541,496	-		MMJJ_RS08355	0.80	+1.8
1,541,497	+		MMJJ_RS08355	0.80	+1.2
1,541,497	+		MMJJ_RS08355	0.80	-1.5
1,541,497	+		MMJJ_RS08355	0.80	+0.8
1,541,497	+		MMJJ_RS08355	0.80	-2.2
1,541,497	+		MMJJ_RS08355	0.80	+0.1
1,541,534	-				+2.5
1,541,535	+				+0.8
1,541,535	+				-2.4
1,541,535	+				-1.9
1,541,537	+				+0.8
1,541,537	+				+2.3
1,541,561	-				-0.3
1,541,562	+				+2.1
1,541,562	+				-0.0
1,541,575	-				-2.0
1,541,581	-				+0.1
1,541,585	+				-2.2
1,541,625	+				+0.2
1,541,651	-				+1.2
1,541,659	+				+0.2
1,541,688	-				+0.8
1,541,691	-				-2.1
1,541,692	+				+1.3
1,541,692	+				-1.0
1,541,702	-		MMJJ_RS08360	0.10	+0.3
1,541,708	-		MMJJ_RS08360	0.11	-0.0
1,541,709	+		MMJJ_RS08360	0.11	-1.8
1,541,720	-		MMJJ_RS08360	0.12	+0.2
1,541,721	+		MMJJ_RS08360	0.12	-1.8
1,541,740	-		MMJJ_RS08360	0.13	+3.9
1,541,819	+		MMJJ_RS08360	0.20	+1.6
1,541,825	-		MMJJ_RS08360	0.21	-0.2
1,541,826	+		MMJJ_RS08360	0.21	-0.3
1,541,832	+		MMJJ_RS08360	0.21	+0.0
1,541,857	-		MMJJ_RS08360	0.24	-1.6
1,541,858	+		MMJJ_RS08360	0.24	+1.8
1,541,883	-		MMJJ_RS08360	0.26	-0.1
1,541,888	-		MMJJ_RS08360	0.26	-2.0
1,541,889	+		MMJJ_RS08360	0.26	-1.5
1,541,892	-		MMJJ_RS08360	0.27	-0.3
1,541,893	+		MMJJ_RS08360	0.27	+2.3
1,541,903	-		MMJJ_RS08360	0.27	-2.9
1,541,903	-		MMJJ_RS08360	0.27	-3.5
1,541,957	-		MMJJ_RS08360	0.32	-2.4
1,541,986	-		MMJJ_RS08360	0.35	+2.0
1,541,987	+		MMJJ_RS08360	0.35	-1.5
1,541,987	+		MMJJ_RS08360	0.35	-1.2
1,541,999	+		MMJJ_RS08360	0.36	+1.0
1,542,001	+		MMJJ_RS08360	0.36	+1.1
1,542,018	+		MMJJ_RS08360	0.37	-2.5
1,542,047	+		MMJJ_RS08360	0.40	+0.4
1,542,102	-		MMJJ_RS08360	0.45	+2.6
1,542,103	+		MMJJ_RS08360	0.45	+2.2
1,542,103	+		MMJJ_RS08360	0.45	-2.4