Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS09250

Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMJJ_RS01035 and MMJJ_RS01040 are separated by 295 nucleotidesMMJJ_RS01040 and MMJJ_RS09250 are separated by 4 nucleotidesMMJJ_RS09250 and MMJJ_RS01045 are separated by 122 nucleotides MMJJ_RS01035: MMJJ_RS01035 - hypothetical protein, at 202,207 to 202,494 _RS01035 MMJJ_RS01040: MMJJ_RS01040 - DUF4013 domain-containing protein, at 202,790 to 203,407 _RS01040 MMJJ_RS09250: MMJJ_RS09250 - hypothetical protein, at 203,412 to 203,669 _RS09250 MMJJ_RS01045: MMJJ_RS01045 - ABC transporter permease, at 203,792 to 205,015 _RS01045 Position (kb) 203 204Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 202.437 kb on - strand, within MMJJ_RS01035at 202.492 kb on - strandat 202.529 kb on - strandat 202.530 kb on + strandat 202.558 kb on + strandat 202.561 kb on - strandat 202.561 kb on - strandat 202.561 kb on - strandat 202.583 kb on + strandat 202.583 kb on + strandat 202.583 kb on + strandat 202.621 kb on - strandat 202.621 kb on - strandat 202.621 kb on - strandat 202.621 kb on - strandat 202.621 kb on - strandat 202.622 kb on + strandat 202.622 kb on + strandat 202.622 kb on + strandat 202.622 kb on + strandat 202.622 kb on + strandat 202.622 kb on + strandat 202.622 kb on + strandat 202.622 kb on + strandat 202.623 kb on - strandat 202.624 kb on + strandat 202.624 kb on + strandat 202.752 kb on - strandat 202.766 kb on - strandat 202.766 kb on - strandat 202.766 kb on - strandat 202.776 kb on + strandat 202.776 kb on + strandat 202.803 kb on + strandat 202.831 kb on + strandat 202.831 kb on + strandat 202.833 kb on - strandat 202.833 kb on - strandat 202.833 kb on - strandat 202.833 kb on - strandat 202.833 kb on - strandat 202.834 kb on + strandat 202.835 kb on - strandat 202.835 kb on - strandat 202.836 kb on + strandat 202.877 kb on - strand, within MMJJ_RS01040at 202.890 kb on + strand, within MMJJ_RS01040at 202.893 kb on - strand, within MMJJ_RS01040at 203.015 kb on + strand, within MMJJ_RS01040at 203.020 kb on + strand, within MMJJ_RS01040at 203.021 kb on - strand, within MMJJ_RS01040at 203.074 kb on + strand, within MMJJ_RS01040at 203.153 kb on + strand, within MMJJ_RS01040at 203.153 kb on + strand, within MMJJ_RS01040at 203.154 kb on - strand, within MMJJ_RS01040at 203.155 kb on + strand, within MMJJ_RS01040at 203.155 kb on + strand, within MMJJ_RS01040at 203.179 kb on - strand, within MMJJ_RS01040at 203.220 kb on + strand, within MMJJ_RS01040at 203.237 kb on - strand, within MMJJ_RS01040at 203.240 kb on - strand, within MMJJ_RS01040at 203.313 kb on + strand, within MMJJ_RS01040at 203.322 kb on + strand, within MMJJ_RS01040at 203.362 kb on - strandat 203.363 kb on + strandat 203.364 kb on - strandat 203.453 kb on + strand, within MMJJ_RS09250at 203.453 kb on + strand, within MMJJ_RS09250at 203.474 kb on - strand, within MMJJ_RS09250at 203.480 kb on - strand, within MMJJ_RS09250at 203.485 kb on - strand, within MMJJ_RS09250at 203.564 kb on + strand, within MMJJ_RS09250at 203.608 kb on - strand, within MMJJ_RS09250at 203.667 kb on - strandat 203.668 kb on + strandat 203.766 kb on + strandat 203.781 kb on + strandat 203.784 kb on + strandat 203.789 kb on - strandat 203.803 kb on - strandat 203.838 kb on - strandat 203.838 kb on - strandat 203.858 kb on - strandat 203.873 kb on - strandat 203.874 kb on + strandat 203.916 kb on - strand, within MMJJ_RS01045at 203.948 kb on - strand, within MMJJ_RS01045at 203.949 kb on + strand, within MMJJ_RS01045at 203.951 kb on - strand, within MMJJ_RS01045at 203.951 kb on - strand, within MMJJ_RS01045at 203.951 kb on - strand, within MMJJ_RS01045at 203.952 kb on + strand, within MMJJ_RS01045at 203.952 kb on + strand, within MMJJ_RS01045at 203.952 kb on + strand, within MMJJ_RS01045at 203.952 kb on + strand, within MMJJ_RS01045at 203.952 kb on + strand, within MMJJ_RS01045at 203.952 kb on + strand, within MMJJ_RS01045at 203.955 kb on - strand, within MMJJ_RS01045at 203.955 kb on - strand, within MMJJ_RS01045at 203.955 kb on - strand, within MMJJ_RS01045at 203.955 kb on - strand, within MMJJ_RS01045at 203.956 kb on + strand, within MMJJ_RS01045at 203.956 kb on + strand, within MMJJ_RS01045at 203.956 kb on + strand, within MMJJ_RS01045at 203.956 kb on + strand, within MMJJ_RS01045at 203.956 kb on + strand, within MMJJ_RS01045at 203.956 kb on + strand, within MMJJ_RS01045at 203.956 kb on + strand, within MMJJ_RS01045at 203.956 kb on + strand, within MMJJ_RS01045at 203.960 kb on + strand, within MMJJ_RS01045at 203.960 kb on + strand, within MMJJ_RS01045at 203.960 kb on + strand, within MMJJ_RS01045at 203.960 kb on + strand, within MMJJ_RS01045at 203.975 kb on - strand, within MMJJ_RS01045at 204.019 kb on - strand, within MMJJ_RS01045at 204.153 kb on + strand, within MMJJ_RS01045at 204.205 kb on - strand, within MMJJ_RS01045at 204.326 kb on - strand, within MMJJ_RS01045at 204.327 kb on + strand, within MMJJ_RS01045at 204.327 kb on + strand, within MMJJ_RS01045at 204.361 kb on + strand, within MMJJ_RS01045at 204.482 kb on - strand, within MMJJ_RS01045at 204.483 kb on + strand, within MMJJ_RS01045at 204.505 kb on - strand, within MMJJ_RS01045at 204.537 kb on + strand, within MMJJ_RS01045

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Nitrofurantoin 0.025 mM
remove
202,437 - MMJJ_RS01035 0.80 +1.3
202,492 - -4.2
202,529 - -3.9
202,530 + +0.5
202,558 + -0.6
202,561 - +1.9
202,561 - +1.7
202,561 - -0.5
202,583 + +0.4
202,583 + +1.9
202,583 + +0.6
202,621 - +0.3
202,621 - -1.4
202,621 - +1.0
202,621 - +1.0
202,621 - +2.9
202,622 + +2.3
202,622 + +1.1
202,622 + +3.4
202,622 + +1.2
202,622 + +0.2
202,622 + +1.6
202,622 + -1.0
202,622 + -2.7
202,623 - +0.0
202,624 + +1.0
202,624 + -0.9
202,752 - +1.1
202,766 - +0.8
202,766 - +2.3
202,766 - +0.3
202,776 + +0.8
202,776 + +3.2
202,803 + +2.8
202,831 + -2.6
202,831 + +1.8
202,833 - +0.4
202,833 - -3.6
202,833 - +4.1
202,833 - +2.1
202,833 - -0.4
202,834 + -0.3
202,835 - +1.1
202,835 - +2.0
202,836 + -0.3
202,877 - MMJJ_RS01040 0.14 +2.2
202,890 + MMJJ_RS01040 0.16 +3.4
202,893 - MMJJ_RS01040 0.17 -0.7
203,015 + MMJJ_RS01040 0.36 -1.2
203,020 + MMJJ_RS01040 0.37 +0.5
203,021 - MMJJ_RS01040 0.37 -2.9
203,074 + MMJJ_RS01040 0.46 -2.8
203,153 + MMJJ_RS01040 0.59 -1.0
203,153 + MMJJ_RS01040 0.59 -0.3
203,154 - MMJJ_RS01040 0.59 -0.3
203,155 + MMJJ_RS01040 0.59 +1.2
203,155 + MMJJ_RS01040 0.59 -1.2
203,179 - MMJJ_RS01040 0.63 -0.3
203,220 + MMJJ_RS01040 0.70 +3.5
203,237 - MMJJ_RS01040 0.72 +0.5
203,240 - MMJJ_RS01040 0.73 -0.1
203,313 + MMJJ_RS01040 0.85 -2.6
203,322 + MMJJ_RS01040 0.86 -1.8
203,362 - -0.1
203,363 + -2.4
203,364 - -0.9
203,453 + MMJJ_RS09250 0.16 -3.1
203,453 + MMJJ_RS09250 0.16 -2.4
203,474 - MMJJ_RS09250 0.24 +0.1
203,480 - MMJJ_RS09250 0.26 -2.5
203,485 - MMJJ_RS09250 0.28 -0.1
203,564 + MMJJ_RS09250 0.59 -3.0
203,608 - MMJJ_RS09250 0.76 -1.8
203,667 - -1.5
203,668 + -1.3
203,766 + +0.5
203,781 + +1.8
203,784 + +1.6
203,789 - -0.1
203,803 - +3.7
203,838 - +1.3
203,838 - -0.2
203,858 - -2.7
203,873 - +3.0
203,874 + +2.6
203,916 - MMJJ_RS01045 0.10 +1.6
203,948 - MMJJ_RS01045 0.13 -0.3
203,949 + MMJJ_RS01045 0.13 +0.1
203,951 - MMJJ_RS01045 0.13 -3.9
203,951 - MMJJ_RS01045 0.13 -0.9
203,951 - MMJJ_RS01045 0.13 -0.1
203,952 + MMJJ_RS01045 0.13 +3.3
203,952 + MMJJ_RS01045 0.13 +0.8
203,952 + MMJJ_RS01045 0.13 +2.9
203,952 + MMJJ_RS01045 0.13 -0.3
203,952 + MMJJ_RS01045 0.13 -3.8
203,952 + MMJJ_RS01045 0.13 +0.3
203,955 - MMJJ_RS01045 0.13 -0.7
203,955 - MMJJ_RS01045 0.13 +0.1
203,955 - MMJJ_RS01045 0.13 +1.5
203,955 - MMJJ_RS01045 0.13 +1.2
203,956 + MMJJ_RS01045 0.13 -1.1
203,956 + MMJJ_RS01045 0.13 -0.7
203,956 + MMJJ_RS01045 0.13 +1.0
203,956 + MMJJ_RS01045 0.13 -1.7
203,956 + MMJJ_RS01045 0.13 -2.7
203,956 + MMJJ_RS01045 0.13 +0.7
203,956 + MMJJ_RS01045 0.13 -1.5
203,956 + MMJJ_RS01045 0.13 -3.2
203,960 + MMJJ_RS01045 0.14 -0.2
203,960 + MMJJ_RS01045 0.14 -3.0
203,960 + MMJJ_RS01045 0.14 -1.3
203,960 + MMJJ_RS01045 0.14 +1.8
203,975 - MMJJ_RS01045 0.15 -3.0
204,019 - MMJJ_RS01045 0.19 -1.0
204,153 + MMJJ_RS01045 0.29 -0.1
204,205 - MMJJ_RS01045 0.34 +1.7
204,326 - MMJJ_RS01045 0.44 -2.0
204,327 + MMJJ_RS01045 0.44 +2.5
204,327 + MMJJ_RS01045 0.44 +2.4
204,361 + MMJJ_RS01045 0.46 +2.5
204,482 - MMJJ_RS01045 0.56 +2.8
204,483 + MMJJ_RS01045 0.56 +1.3
204,505 - MMJJ_RS01045 0.58 -0.0
204,537 + MMJJ_RS01045 0.61 +0.9

Or see this region's nucleotide sequence