Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08190

Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Nitrofurantoin 0.025 mM
1,503,335	+				-2.2
1,503,335	+				-1.1
1,503,361	+				-0.1
1,503,362	-				-0.2
1,503,378	-				+0.1
1,503,419	+				-2.0
1,503,420	-				-0.3
1,503,420	-				-1.8
1,503,420	-				+0.4
1,503,452	-				-0.5
1,503,452	-				+0.7
1,503,453	+				-0.5
1,503,453	+				-2.2
1,503,460	-		MMJJ_RS08185	0.11	+1.8
1,503,460	-		MMJJ_RS08185	0.11	+1.9
1,503,460	-		MMJJ_RS08185	0.11	-0.6
1,503,461	+		MMJJ_RS08185	0.11	-1.8
1,503,461	+		MMJJ_RS08185	0.11	-0.7
1,503,464	-		MMJJ_RS08185	0.11	-0.4
1,503,505	+		MMJJ_RS08185	0.17	-3.6
1,503,510	-		MMJJ_RS08185	0.17	-2.0
1,503,510	-		MMJJ_RS08185	0.17	+0.9
1,503,510	-		MMJJ_RS08185	0.17	-3.9
1,503,510	-		MMJJ_RS08185	0.17	+1.4
1,503,510	-		MMJJ_RS08185	0.17	-3.8
1,503,510	-		MMJJ_RS08185	0.17	-1.6
1,503,510	-		MMJJ_RS08185	0.17	-3.9
1,503,510	-		MMJJ_RS08185	0.17	-3.0
1,503,510	-		MMJJ_RS08185	0.17	-0.9
1,503,510	-		MMJJ_RS08185	0.17	-0.1
1,503,511	+		MMJJ_RS08185	0.18	+0.7
1,503,511	+		MMJJ_RS08185	0.18	-0.6
1,503,511	+		MMJJ_RS08185	0.18	+1.7
1,503,511	+		MMJJ_RS08185	0.18	+1.0
1,503,511	+		MMJJ_RS08185	0.18	+0.3
1,503,511	+		MMJJ_RS08185	0.18	+0.8
1,503,511	+		MMJJ_RS08185	0.18	-2.7
1,503,511	+		MMJJ_RS08185	0.18	+0.9
1,503,511	+		MMJJ_RS08185	0.18	-1.1
1,503,511	+		MMJJ_RS08185	0.18	+2.7
1,503,511	+		MMJJ_RS08185	0.18	-1.5
1,503,523	+		MMJJ_RS08185	0.19	-1.0
1,503,608	-		MMJJ_RS08185	0.30	-3.6
1,503,609	+		MMJJ_RS08185	0.30	-3.2
1,503,609	+		MMJJ_RS08185	0.30	-0.2
1,503,636	+		MMJJ_RS08185	0.34	+1.6
1,503,638	-		MMJJ_RS08185	0.34	+1.2
1,503,639	+		MMJJ_RS08185	0.34	-0.4
1,503,652	-		MMJJ_RS08185	0.36	-1.3
1,503,694	-		MMJJ_RS08185	0.42	-3.6
1,503,694	-		MMJJ_RS08185	0.42	+0.4
1,503,695	+		MMJJ_RS08185	0.42	-0.5
1,503,699	+		MMJJ_RS08185	0.42	+1.5
1,503,704	-		MMJJ_RS08185	0.43	+1.5
1,503,704	-		MMJJ_RS08185	0.43	+2.7
1,503,727	-		MMJJ_RS08185	0.46	+0.4
1,503,728	+		MMJJ_RS08185	0.46	-2.4
1,503,728	+		MMJJ_RS08185	0.46	-0.3
1,503,762	+		MMJJ_RS08185	0.51	-3.3
1,503,763	-		MMJJ_RS08185	0.51	-1.6
1,503,766	-		MMJJ_RS08185	0.51	-0.6
1,503,766	-		MMJJ_RS08185	0.51	+0.4
1,503,766	-		MMJJ_RS08185	0.51	-0.9
1,503,767	+		MMJJ_RS08185	0.51	-0.0
1,503,767	+		MMJJ_RS08185	0.51	-1.6
1,503,859	-		MMJJ_RS08185	0.63	-2.8
1,503,866	-		MMJJ_RS08185	0.64	-2.4
1,503,866	-		MMJJ_RS08185	0.64	+0.3
1,503,876	+		MMJJ_RS08185	0.65	-0.1
1,503,876	+		MMJJ_RS08185	0.65	-1.7
1,503,877	-		MMJJ_RS08185	0.66	+0.7
1,503,878	+		MMJJ_RS08185	0.66	+1.3
1,503,878	+		MMJJ_RS08185	0.66	+0.4
1,503,889	+		MMJJ_RS08185	0.67	-2.2
1,503,906	+		MMJJ_RS08185	0.69	-0.5
1,503,906	+		MMJJ_RS08185	0.69	-3.2
1,503,912	+		MMJJ_RS08185	0.70	-2.3
1,503,955	-		MMJJ_RS08185	0.76	-1.6
1,503,955	-		MMJJ_RS08185	0.76	+0.4
1,503,963	+		MMJJ_RS08185	0.77	+0.4
1,503,967	-		MMJJ_RS08185	0.77	-0.8
1,503,968	+		MMJJ_RS08185	0.78	+2.2
1,503,980	-		MMJJ_RS08185	0.79	-1.3
1,504,067	-				-2.6
1,504,068	+				+1.4
1,504,071	-				-2.6
1,504,072	+				-0.8
1,504,094	-				+0.9
1,504,151	-				-0.1
1,504,151	-				-4.2
1,504,154	-				-1.4
1,504,184	-				-1.4
1,504,185	+				-0.1
1,504,192	+				-1.3
1,504,206	+				-2.5
1,504,206	+				-0.4
1,504,206	+				-0.4
1,504,209	-				+0.2
1,504,210	+				+1.9
1,504,215	-				+2.2
1,504,235	+				+2.1
1,504,277	+				+0.6
1,504,284	-				-1.8
1,504,284	-				-1.4
1,504,291	-				-0.5
1,504,295	-				+0.1
1,504,302	-				-1.7
1,504,323	+				+0.8
1,504,339	-				-2.4
1,504,340	+				-4.0
1,504,534	-				+1.4
1,504,573	+		MMJJ_RS08190	0.46	-1.0
1,504,622	-		MMJJ_RS08190	0.55	-2.1
1,504,622	-		MMJJ_RS08190	0.55	-2.4
1,504,623	+				-0.2
1,504,623	+				+1.4
1,504,627	-		MMJJ_RS08190	0.56	-1.6
1,504,627	-		MMJJ_RS08190	0.56	-0.9
1,504,627	-		MMJJ_RS08190	0.56	-0.9
1,504,628	+		MMJJ_RS08190	0.56	-1.2
1,504,677	-		MMJJ_RS08190	0.65	-0.9
1,504,832	+				-2.1
1,504,885	-				+0.6
1,504,885	-				+1.1
1,504,885	-				-1.2
1,504,885	-				+2.5
1,504,885	-				-2.7
1,504,885	-				-2.6
1,504,885	-				-0.4
1,504,885	-				+3.5
1,504,886	+				-1.9
1,504,886	+				-1.5
1,504,886	+				+0.7
1,504,886	+				+0.9
1,504,893	-				+3.7
1,504,894	+				-2.4
1,504,898	-				+1.2
1,504,898	-				+0.4
1,504,898	-				+1.4
1,504,898	-				+1.3
1,504,899	+				-1.7
1,504,899	+				+4.2
1,504,899	+				-0.3
1,504,917	-				+2.4
1,504,923	-				+1.9
1,504,996	-		MMJJ_RS08195	0.13	-1.2
1,505,017	+		MMJJ_RS08195	0.19	+0.5
1,505,040	+		MMJJ_RS08195	0.25	-3.0
1,505,097	-		MMJJ_RS08195	0.40	+1.7
1,505,153	-		MMJJ_RS08195	0.55	+1.6
1,505,195	-		MMJJ_RS08195	0.67	+1.4
1,505,216	-		MMJJ_RS08195	0.72	+0.3
1,505,219	+		MMJJ_RS08195	0.73	+0.9
1,505,219	+		MMJJ_RS08195	0.73	-0.6
1,505,225	-		MMJJ_RS08195	0.75	+0.7
1,505,250	+		MMJJ_RS08195	0.81	+2.1
1,505,256	+		MMJJ_RS08195	0.83	+2.4
1,505,293	-				-3.5
1,505,313	+				-0.6
1,505,318	-				+1.0
1,505,318	-				-0.6
1,505,362	-				-3.4
1,505,362	-				-2.8
1,505,362	-				-4.3
1,505,378	+				+1.9
1,505,378	+				+0.8
1,505,407	-				-0.6
1,505,412	-				-0.4
1,505,412	-				+1.9
1,505,413	+				+0.1
1,505,414	-				+0.7
1,505,414	-				-0.3
1,505,488	-				-2.5
1,505,489	+				+3.0
1,505,489	+				-1.2
1,505,494	-				+2.8
1,505,495	+				+1.2
1,505,497	-				-0.9
1,505,498	+				-2.5
1,505,516	-				-0.9
1,505,517	+				+1.3
1,505,517	+				-0.2
1,505,517	+				+2.7
1,505,517	+				+2.3
1,505,517	+				-2.2
1,505,517	+				-2.4
1,505,517	+				+1.4
1,505,551	-				+2.5
1,505,551	-				-1.4
1,505,552	+				-2.2
1,505,552	+				-1.0
1,505,554	-				+1.7
1,505,554	-				-3.9
1,505,555	+				+2.4
1,505,555	+				-0.0
1,505,555	+				-1.2
1,505,590	-				+1.1
1,505,590	-				-0.1
1,505,590	-				+1.5
1,505,591	+				+0.4
1,505,591	+				-3.9
1,505,652	-		MMJJ_RS08200	0.11	+3.1
1,505,653	+		MMJJ_RS08200	0.12	+0.0
1,505,698	-		MMJJ_RS08200	0.14	+2.6
1,505,740	-		MMJJ_RS08200	0.16	-3.3
1,505,741	+		MMJJ_RS08200	0.16	+2.5
1,505,742	-		MMJJ_RS08200	0.16	-2.1
1,505,742	-		MMJJ_RS08200	0.16	+1.9
1,505,868	-		MMJJ_RS08200	0.22	-1.4