Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06365

Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Nitrofurantoin 0.025 mM
1,178,469	-		MMJJ_RS06360	0.71	+1.6
1,178,679	+				+0.6
1,178,737	-				+0.6
1,178,884	+				+1.6
1,178,889	-				+3.0
1,178,905	+				+0.6
1,178,905	+				+0.6
1,178,905	+				+3.6
1,178,941	-				+1.6
1,178,941	-				-0.3
1,178,942	+				-3.9
1,178,942	+				-2.8
1,178,942	+				-2.7
1,178,943	-				-2.3
1,178,943	-				-4.1
1,178,944	+				-0.1
1,178,972	-				+0.6
1,178,973	+				-1.0
1,178,977	-				-1.8
1,178,981	-				+1.9
1,178,993	-				-1.6
1,178,997	+				+0.2
1,179,000	-				-3.1
1,179,000	-				+0.1
1,179,000	-				+1.1
1,179,000	-				-3.7
1,179,000	-				-1.3
1,179,001	+				-0.3
1,179,001	+				-1.2
1,179,001	+				+1.0
1,179,001	+				-0.1
1,179,001	+				-1.5
1,179,001	+				+1.4
1,179,001	+				-0.2
1,179,003	-				+0.5
1,179,003	-				-4.0
1,179,004	+				+1.2
1,179,004	+				-1.8
1,179,011	-				-1.2
1,179,012	+				+0.1
1,179,012	+				-2.4
1,179,031	-				-2.5
1,179,032	+				+0.3
1,179,061	+				-2.4
1,179,065	-				-1.2
1,179,066	+				-0.7
1,179,066	+				-2.4
1,179,075	-				-0.8
1,179,079	+				+0.2
1,179,086	-				-1.8
1,179,097	+				-2.3
1,179,104	-				-2.0
1,179,107	-				-1.0
1,179,107	-				-3.2
1,179,135	+				-1.6
1,179,320	+		MMJJ_RS06365	0.14	-1.0
1,179,335	-		MMJJ_RS06365	0.16	-2.1
1,179,369	+		MMJJ_RS06365	0.18	-2.7
1,179,459	+		MMJJ_RS06365	0.25	+0.1
1,179,523	-		MMJJ_RS06365	0.30	-1.4
1,179,523	-		MMJJ_RS06365	0.30	-2.6
1,179,524	+		MMJJ_RS06365	0.30	-1.5
1,179,529	+		MMJJ_RS06365	0.31	-3.7
1,179,530	-		MMJJ_RS06365	0.31	-1.6
1,179,548	+		MMJJ_RS06365	0.32	-2.4
1,179,571	+		MMJJ_RS06365	0.34	-0.8
1,179,589	-		MMJJ_RS06365	0.35	-2.3
1,179,633	+		MMJJ_RS06365	0.39	+0.9
1,179,653	-		MMJJ_RS06365	0.40	-2.9
1,179,683	+		MMJJ_RS06365	0.43	-1.6
1,179,754	-		MMJJ_RS06365	0.48	-3.8
1,179,754	-		MMJJ_RS06365	0.48	-2.2
1,179,754	-		MMJJ_RS06365	0.48	-3.1
1,179,754	-		MMJJ_RS06365	0.48	-1.9
1,179,754	-		MMJJ_RS06365	0.48	-0.8
1,179,754	-		MMJJ_RS06365	0.48	-0.6
1,179,754	-		MMJJ_RS06365	0.48	-1.4
1,179,754	-		MMJJ_RS06365	0.48	-2.2
1,179,754	-		MMJJ_RS06365	0.48	-2.3
1,179,754	-		MMJJ_RS06365	0.48	-2.3
1,179,755	+		MMJJ_RS06365	0.48	-1.2
1,179,755	+		MMJJ_RS06365	0.48	-2.0
1,179,755	+		MMJJ_RS06365	0.48	+1.6
1,179,755	+		MMJJ_RS06365	0.48	-3.0
1,179,755	+		MMJJ_RS06365	0.48	-0.9
1,179,755	+		MMJJ_RS06365	0.48	-2.0
1,179,755	+		MMJJ_RS06365	0.48	-0.4
1,179,755	+		MMJJ_RS06365	0.48	-3.6
1,179,755	+		MMJJ_RS06365	0.48	-2.5
1,179,755	+		MMJJ_RS06365	0.48	-3.3
1,179,875	+		MMJJ_RS06365	0.58	-1.1
1,179,875	+		MMJJ_RS06365	0.58	-2.4
1,179,885	+		MMJJ_RS06365	0.58	-0.6
1,179,910	-		MMJJ_RS06365	0.60	-1.2
1,179,929	+		MMJJ_RS06365	0.62	-1.4
1,179,939	+		MMJJ_RS06365	0.63	+0.6
1,179,939	+		MMJJ_RS06365	0.63	-1.9
1,179,939	+		MMJJ_RS06365	0.63	-4.2
1,179,964	-		MMJJ_RS06365	0.65	-1.3
1,179,964	-		MMJJ_RS06365	0.65	-3.8
1,179,964	-		MMJJ_RS06365	0.65	-0.6
1,179,964	-		MMJJ_RS06365	0.65	-3.0
1,179,965	+		MMJJ_RS06365	0.65	-1.8
1,179,965	+		MMJJ_RS06365	0.65	-2.1
1,179,966	-		MMJJ_RS06365	0.65	-1.0
1,179,966	-		MMJJ_RS06365	0.65	-3.0
1,179,976	-		MMJJ_RS06365	0.65	-1.6
1,180,077	-		MMJJ_RS06365	0.73	-3.4
1,180,077	-		MMJJ_RS06365	0.73	-1.6
1,180,077	-		MMJJ_RS06365	0.73	-2.3
1,180,077	-		MMJJ_RS06365	0.73	-3.5
1,180,078	+		MMJJ_RS06365	0.73	-3.4
1,180,078	+		MMJJ_RS06365	0.73	-2.3
1,180,078	+		MMJJ_RS06365	0.73	-2.8
1,180,078	+		MMJJ_RS06365	0.73	-3.5
1,180,078	+		MMJJ_RS06365	0.73	-3.3
1,180,079	-		MMJJ_RS06365	0.74	-0.8
1,180,079	-		MMJJ_RS06365	0.74	-2.7
1,180,079	-		MMJJ_RS06365	0.74	+0.6
1,180,079	-		MMJJ_RS06365	0.74	-2.5
1,180,079	-		MMJJ_RS06365	0.74	-3.1
1,180,080	+		MMJJ_RS06365	0.74	-1.4
1,180,080	+		MMJJ_RS06365	0.74	-2.5
1,180,081	-		MMJJ_RS06365	0.74	-2.2
1,180,081	-		MMJJ_RS06365	0.74	-0.5
1,180,081	-		MMJJ_RS06365	0.74	-2.8
1,180,081	-		MMJJ_RS06365	0.74	-1.7
1,180,081	-		MMJJ_RS06365	0.74	-2.0
1,180,081	-		MMJJ_RS06365	0.74	-1.0
1,180,081	-		MMJJ_RS06365	0.74	-0.4
1,180,081	-		MMJJ_RS06365	0.74	-2.0
1,180,082	+		MMJJ_RS06365	0.74	-1.2
1,180,082	+		MMJJ_RS06365	0.74	-0.0
1,180,082	+		MMJJ_RS06365	0.74	-1.3
1,180,082	+		MMJJ_RS06365	0.74	-1.0
1,180,082	+		MMJJ_RS06365	0.74	-1.9
1,180,082	+		MMJJ_RS06365	0.74	-2.9
1,180,082	+		MMJJ_RS06365	0.74	-1.4
1,180,082	+		MMJJ_RS06365	0.74	-1.2
1,180,083	-		MMJJ_RS06365	0.74	-3.0
1,180,083	-		MMJJ_RS06365	0.74	-1.8
1,180,083	-		MMJJ_RS06365	0.74	-1.0
1,180,083	-		MMJJ_RS06365	0.74	-1.5
1,180,083	-		MMJJ_RS06365	0.74	-1.4
1,180,083	-		MMJJ_RS06365	0.74	-2.8
1,180,083	-		MMJJ_RS06365	0.74	-2.2
1,180,084	+		MMJJ_RS06365	0.74	-1.7
1,180,084	+		MMJJ_RS06365	0.74	-1.8
1,180,084	+		MMJJ_RS06365	0.74	-2.7
1,180,084	+		MMJJ_RS06365	0.74	-0.4
1,180,121	-		MMJJ_RS06365	0.77	-2.9
1,180,121	-		MMJJ_RS06365	0.77	-0.3
1,180,121	-		MMJJ_RS06365	0.77	-2.8
1,180,123	-		MMJJ_RS06365	0.77	-0.0
1,180,123	-		MMJJ_RS06365	0.77	-3.5
1,180,123	-		MMJJ_RS06365	0.77	-2.8
1,180,123	-		MMJJ_RS06365	0.77	-1.5
1,180,124	+		MMJJ_RS06365	0.77	-0.0
1,180,124	+		MMJJ_RS06365	0.77	-3.5
1,180,129	-		MMJJ_RS06365	0.77	-2.0
1,180,140	+		MMJJ_RS06365	0.78	-3.1
1,180,151	+		MMJJ_RS06365	0.79	-0.1
1,180,192	-		MMJJ_RS06365	0.82	-2.3
1,180,193	+		MMJJ_RS06365	0.82	+0.6
1,180,199	-		MMJJ_RS06365	0.83	+0.6
1,180,204	-		MMJJ_RS06365	0.83	-3.6
1,180,204	-		MMJJ_RS06365	0.83	-3.0
1,180,205	+		MMJJ_RS06365	0.83	-1.7
1,180,205	+		MMJJ_RS06365	0.83	-3.1
1,180,250	-		MMJJ_RS06365	0.87	-3.4
1,180,251	+		MMJJ_RS06365	0.87	-2.1
1,180,280	+		MMJJ_RS06365	0.89	-3.4
1,180,280	+		MMJJ_RS06365	0.89	-2.2
1,180,351	-				-2.7
1,180,363	-				-3.0
1,180,373	-				-0.2
1,180,382	+				-2.8
1,180,416	-				-3.0
1,180,438	+				-0.0
1,180,441	-				+0.9
1,180,651	+				-1.0
1,180,858	+				-2.4
1,180,879	-				+0.3
1,180,880	+				-3.1
1,180,884	-				+1.6
1,180,884	-				-0.6
1,180,884	-				+2.7
1,180,884	-				-1.4
1,180,884	-				+2.5
1,180,884	-				-2.0
1,180,884	-				+2.9
1,180,884	-				+2.9
1,180,884	-				-3.5
1,180,884	-				-0.2
1,180,884	-				-0.4
1,180,884	-				+0.6
1,180,884	-				-2.9
1,180,885	+				-1.0
1,180,885	+				+2.8
1,180,885	+				-2.7
1,180,885	+				-2.1
1,180,885	+				-1.2
1,180,885	+				-0.4
1,180,885	+				-1.9
1,180,885	+				+1.6
1,180,885	+				-1.6
1,180,889	-				+2.3
1,180,889	-				+2.4
1,180,896	+				+2.0
1,180,930	-				-0.6
1,180,930	-				-0.2
1,180,930	-				-3.6
1,180,930	-				-0.7
1,180,930	-				-0.6
1,180,930	-				+1.7
1,180,930	-				-2.7
1,180,930	-				-3.0
1,180,930	-				+3.5
1,180,930	-				-0.9
1,180,930	-				-0.1
1,180,930	-				-1.2
1,180,930	-				+2.6
1,180,931	+				+3.5
1,180,931	+				-2.6
1,180,931	+				+0.6
1,180,931	+				+2.5
1,180,931	+				-2.1
1,180,931	+				-0.4
1,180,931	+				+1.0
1,180,931	+				-3.1
1,180,931	+				-1.0
1,180,931	+				-0.7
1,180,932	-				-0.4
1,180,932	-				+1.8
1,180,932	-				-0.4
1,180,933	+				+2.3
1,180,933	+				+1.4
1,180,933	+				+2.2
1,180,934	-				-2.8
1,180,934	-				+0.6
1,180,934	-				-1.1
1,180,935	+				-1.0
1,180,936	-				+0.2
1,180,937	+				-2.6
1,180,937	+				-0.4
1,180,937	+				-2.1
1,180,958	+				+0.9
1,180,961	+				-0.4
1,180,961	+				-3.7
1,180,961	+				-2.6
1,180,963	+				+0.5
1,180,980	-				+2.1
1,180,995	+				-1.7
1,180,995	+				-2.3
1,181,272	-		MMJJ_RS06375	0.52	+0.6
1,181,280	-		MMJJ_RS06375	0.54	+0.6
1,181,331	+		MMJJ_RS06375	0.63	+2.0
1,181,359	+		MMJJ_RS06375	0.68	+0.1
1,181,361	-		MMJJ_RS06375	0.68	-1.2
1,181,390	-		MMJJ_RS06375	0.73	+1.6