Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05205

Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS05200 and MMJJ_RS05205 are separated by 4 nucleotidesMMJJ_RS05205 and MMJJ_RS05210 are separated by 50 nucleotides MMJJ_RS05200: MMJJ_RS05200 - TIGR04013 family B12-binding domain/radical SAM domain-containing protein, at 960,159 to 961,268 _RS05200 MMJJ_RS05205: MMJJ_RS05205 - DUF2118 domain-containing protein, at 961,273 to 961,725 _RS05205 MMJJ_RS05210: MMJJ_RS05210 - polyprenyl synthetase family protein, at 961,776 to 962,729 _RS05210 Position (kb) 961 962Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 960.283 kb on - strand, within MMJJ_RS05200at 960.289 kb on + strand, within MMJJ_RS05200at 960.302 kb on - strand, within MMJJ_RS05200at 960.302 kb on - strand, within MMJJ_RS05200at 960.331 kb on - strand, within MMJJ_RS05200at 960.332 kb on + strand, within MMJJ_RS05200at 960.362 kb on - strand, within MMJJ_RS05200at 960.362 kb on - strand, within MMJJ_RS05200at 960.364 kb on - strand, within MMJJ_RS05200at 960.364 kb on - strand, within MMJJ_RS05200at 960.408 kb on + strand, within MMJJ_RS05200at 960.433 kb on - strand, within MMJJ_RS05200at 960.436 kb on - strand, within MMJJ_RS05200at 960.473 kb on + strand, within MMJJ_RS05200at 960.512 kb on - strand, within MMJJ_RS05200at 960.579 kb on + strand, within MMJJ_RS05200at 960.594 kb on - strand, within MMJJ_RS05200at 960.594 kb on - strand, within MMJJ_RS05200at 960.594 kb on - strand, within MMJJ_RS05200at 960.594 kb on - strand, within MMJJ_RS05200at 960.602 kb on - strandat 960.603 kb on + strand, within MMJJ_RS05200at 960.626 kb on + strand, within MMJJ_RS05200at 960.626 kb on + strand, within MMJJ_RS05200at 960.626 kb on + strand, within MMJJ_RS05200at 960.638 kb on - strand, within MMJJ_RS05200at 960.641 kb on + strand, within MMJJ_RS05200at 960.647 kb on - strand, within MMJJ_RS05200at 960.647 kb on - strand, within MMJJ_RS05200at 960.647 kb on - strand, within MMJJ_RS05200at 960.648 kb on + strand, within MMJJ_RS05200at 960.648 kb on + strand, within MMJJ_RS05200at 960.654 kb on + strand, within MMJJ_RS05200at 960.654 kb on + strand, within MMJJ_RS05200at 960.663 kb on + strand, within MMJJ_RS05200at 960.703 kb on - strand, within MMJJ_RS05200at 960.723 kb on - strand, within MMJJ_RS05200at 960.724 kb on + strand, within MMJJ_RS05200at 960.753 kb on + strand, within MMJJ_RS05200at 960.832 kb on - strand, within MMJJ_RS05200at 960.833 kb on + strand, within MMJJ_RS05200at 960.869 kb on + strand, within MMJJ_RS05200at 960.869 kb on + strand, within MMJJ_RS05200at 960.875 kb on - strand, within MMJJ_RS05200at 960.875 kb on - strand, within MMJJ_RS05200at 960.894 kb on - strand, within MMJJ_RS05200at 960.941 kb on - strand, within MMJJ_RS05200at 960.941 kb on - strand, within MMJJ_RS05200at 960.942 kb on + strand, within MMJJ_RS05200at 960.942 kb on + strand, within MMJJ_RS05200at 960.942 kb on + strand, within MMJJ_RS05200at 960.943 kb on - strand, within MMJJ_RS05200at 960.943 kb on - strand, within MMJJ_RS05200at 960.944 kb on + strand, within MMJJ_RS05200at 961.007 kb on + strand, within MMJJ_RS05200at 961.026 kb on + strand, within MMJJ_RS05200at 961.086 kb on - strand, within MMJJ_RS05200at 961.086 kb on - strand, within MMJJ_RS05200at 961.087 kb on + strand, within MMJJ_RS05200at 961.091 kb on - strand, within MMJJ_RS05200at 961.091 kb on - strand, within MMJJ_RS05200at 961.093 kb on - strand, within MMJJ_RS05200at 961.122 kb on - strand, within MMJJ_RS05200at 961.123 kb on + strand, within MMJJ_RS05200at 961.123 kb on + strand, within MMJJ_RS05200at 961.127 kb on - strand, within MMJJ_RS05200at 961.128 kb on + strand, within MMJJ_RS05200at 961.288 kb on + strandat 961.289 kb on - strandat 961.289 kb on - strandat 961.290 kb on + strandat 961.290 kb on + strandat 961.299 kb on + strandat 961.333 kb on - strand, within MMJJ_RS05205at 961.333 kb on - strand, within MMJJ_RS05205at 961.359 kb on - strand, within MMJJ_RS05205at 961.370 kb on + strand, within MMJJ_RS05205at 961.483 kb on + strand, within MMJJ_RS05205at 961.499 kb on - strand, within MMJJ_RS05205at 961.499 kb on - strand, within MMJJ_RS05205at 961.499 kb on - strand, within MMJJ_RS05205at 961.499 kb on - strand, within MMJJ_RS05205at 961.499 kb on - strand, within MMJJ_RS05205at 961.499 kb on - strand, within MMJJ_RS05205at 961.500 kb on + strand, within MMJJ_RS05205at 961.500 kb on + strand, within MMJJ_RS05205at 961.503 kb on - strand, within MMJJ_RS05205at 961.503 kb on - strand, within MMJJ_RS05205at 961.503 kb on - strand, within MMJJ_RS05205at 961.503 kb on - strand, within MMJJ_RS05205at 961.504 kb on + strand, within MMJJ_RS05205at 961.504 kb on + strand, within MMJJ_RS05205at 961.504 kb on + strand, within MMJJ_RS05205at 961.504 kb on + strand, within MMJJ_RS05205at 961.504 kb on + strand, within MMJJ_RS05205at 961.504 kb on + strand, within MMJJ_RS05205at 961.504 kb on + strand, within MMJJ_RS05205at 961.509 kb on - strand, within MMJJ_RS05205at 961.510 kb on + strand, within MMJJ_RS05205at 961.510 kb on + strand, within MMJJ_RS05205at 961.510 kb on + strand, within MMJJ_RS05205at 961.531 kb on - strand, within MMJJ_RS05205at 961.532 kb on + strand, within MMJJ_RS05205at 961.532 kb on + strand, within MMJJ_RS05205at 961.556 kb on + strand, within MMJJ_RS05205at 961.565 kb on - strand, within MMJJ_RS05205at 961.566 kb on + strand, within MMJJ_RS05205at 961.566 kb on + strand, within MMJJ_RS05205at 961.574 kb on + strand, within MMJJ_RS05205at 961.583 kb on - strand, within MMJJ_RS05205at 961.583 kb on - strand, within MMJJ_RS05205at 961.583 kb on - strand, within MMJJ_RS05205at 961.583 kb on - strand, within MMJJ_RS05205at 961.583 kb on - strand, within MMJJ_RS05205at 961.584 kb on + strand, within MMJJ_RS05205at 961.584 kb on + strand, within MMJJ_RS05205at 961.585 kb on - strand, within MMJJ_RS05205at 961.586 kb on + strand, within MMJJ_RS05205at 961.586 kb on + strand, within MMJJ_RS05205at 961.586 kb on + strand, within MMJJ_RS05205at 961.586 kb on + strand, within MMJJ_RS05205at 961.586 kb on + strand, within MMJJ_RS05205at 961.589 kb on + strand, within MMJJ_RS05205at 961.589 kb on + strand, within MMJJ_RS05205at 961.589 kb on + strand, within MMJJ_RS05205at 961.589 kb on + strand, within MMJJ_RS05205at 961.691 kb on + strandat 961.706 kb on - strandat 961.737 kb on - strandat 961.763 kb on - strandat 961.764 kb on + strandat 961.767 kb on - strandat 961.768 kb on + strandat 962.146 kb on - strand, within MMJJ_RS05210

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Nitrofurantoin 0.025 mM
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960,283 - MMJJ_RS05200 0.11 +3.8
960,289 + MMJJ_RS05200 0.12 -0.8
960,302 - MMJJ_RS05200 0.13 +1.0
960,302 - MMJJ_RS05200 0.13 -3.2
960,331 - MMJJ_RS05200 0.15 +2.2
960,332 + MMJJ_RS05200 0.16 -3.2
960,362 - MMJJ_RS05200 0.18 +1.7
960,362 - MMJJ_RS05200 0.18 +2.3
960,364 - MMJJ_RS05200 0.18 +0.9
960,364 - MMJJ_RS05200 0.18 +2.7
960,408 + MMJJ_RS05200 0.22 +1.7
960,433 - MMJJ_RS05200 0.25 +0.9
960,436 - MMJJ_RS05200 0.25 -0.8
960,473 + MMJJ_RS05200 0.28 -0.6
960,512 - MMJJ_RS05200 0.32 -3.7
960,579 + MMJJ_RS05200 0.38 +1.2
960,594 - MMJJ_RS05200 0.39 +0.5
960,594 - MMJJ_RS05200 0.39 +3.1
960,594 - MMJJ_RS05200 0.39 +2.0
960,594 - MMJJ_RS05200 0.39 -0.8
960,602 - -0.1
960,603 + MMJJ_RS05200 0.40 +0.2
960,626 + MMJJ_RS05200 0.42 +0.5
960,626 + MMJJ_RS05200 0.42 +0.8
960,626 + MMJJ_RS05200 0.42 -1.0
960,638 - MMJJ_RS05200 0.43 -2.4
960,641 + MMJJ_RS05200 0.43 +0.4
960,647 - MMJJ_RS05200 0.44 +0.3
960,647 - MMJJ_RS05200 0.44 +0.4
960,647 - MMJJ_RS05200 0.44 -1.3
960,648 + MMJJ_RS05200 0.44 +1.6
960,648 + MMJJ_RS05200 0.44 +0.2
960,654 + MMJJ_RS05200 0.45 -3.4
960,654 + MMJJ_RS05200 0.45 +2.1
960,663 + MMJJ_RS05200 0.45 +2.9
960,703 - MMJJ_RS05200 0.49 +0.7
960,723 - MMJJ_RS05200 0.51 +0.5
960,724 + MMJJ_RS05200 0.51 -0.5
960,753 + MMJJ_RS05200 0.54 +2.4
960,832 - MMJJ_RS05200 0.61 -0.0
960,833 + MMJJ_RS05200 0.61 -0.8
960,869 + MMJJ_RS05200 0.64 +1.0
960,869 + MMJJ_RS05200 0.64 -2.5
960,875 - MMJJ_RS05200 0.65 +1.6
960,875 - MMJJ_RS05200 0.65 +1.2
960,894 - MMJJ_RS05200 0.66 +0.8
960,941 - MMJJ_RS05200 0.70 -1.1
960,941 - MMJJ_RS05200 0.70 -0.2
960,942 + MMJJ_RS05200 0.71 +0.5
960,942 + MMJJ_RS05200 0.71 -3.3
960,942 + MMJJ_RS05200 0.71 -2.9
960,943 - MMJJ_RS05200 0.71 -2.4
960,943 - MMJJ_RS05200 0.71 -2.1
960,944 + MMJJ_RS05200 0.71 -1.1
961,007 + MMJJ_RS05200 0.76 +2.2
961,026 + MMJJ_RS05200 0.78 +3.0
961,086 - MMJJ_RS05200 0.84 -0.5
961,086 - MMJJ_RS05200 0.84 -1.7
961,087 + MMJJ_RS05200 0.84 -1.3
961,091 - MMJJ_RS05200 0.84 -0.8
961,091 - MMJJ_RS05200 0.84 -0.7
961,093 - MMJJ_RS05200 0.84 -0.0
961,122 - MMJJ_RS05200 0.87 -1.4
961,123 + MMJJ_RS05200 0.87 -0.5
961,123 + MMJJ_RS05200 0.87 +0.4
961,127 - MMJJ_RS05200 0.87 +2.1
961,128 + MMJJ_RS05200 0.87 -1.9
961,288 + +1.5
961,289 - -0.0
961,289 - +0.1
961,290 + -1.6
961,290 + +2.5
961,299 + -0.6
961,333 - MMJJ_RS05205 0.13 -1.6
961,333 - MMJJ_RS05205 0.13 -0.5
961,359 - MMJJ_RS05205 0.19 +0.9
961,370 + MMJJ_RS05205 0.21 -0.5
961,483 + MMJJ_RS05205 0.46 -0.0
961,499 - MMJJ_RS05205 0.50 -1.7
961,499 - MMJJ_RS05205 0.50 -4.2
961,499 - MMJJ_RS05205 0.50 +1.5
961,499 - MMJJ_RS05205 0.50 -0.5
961,499 - MMJJ_RS05205 0.50 +0.8
961,499 - MMJJ_RS05205 0.50 +2.1
961,500 + MMJJ_RS05205 0.50 +2.1
961,500 + MMJJ_RS05205 0.50 -3.6
961,503 - MMJJ_RS05205 0.51 +3.1
961,503 - MMJJ_RS05205 0.51 -1.1
961,503 - MMJJ_RS05205 0.51 -0.0
961,503 - MMJJ_RS05205 0.51 -1.9
961,504 + MMJJ_RS05205 0.51 -1.5
961,504 + MMJJ_RS05205 0.51 -1.0
961,504 + MMJJ_RS05205 0.51 -1.6
961,504 + MMJJ_RS05205 0.51 +1.0
961,504 + MMJJ_RS05205 0.51 -0.8
961,504 + MMJJ_RS05205 0.51 +2.4
961,504 + MMJJ_RS05205 0.51 -3.1
961,509 - MMJJ_RS05205 0.52 +1.9
961,510 + MMJJ_RS05205 0.52 -1.0
961,510 + MMJJ_RS05205 0.52 +0.3
961,510 + MMJJ_RS05205 0.52 +0.9
961,531 - MMJJ_RS05205 0.57 +0.4
961,532 + MMJJ_RS05205 0.57 -1.3
961,532 + MMJJ_RS05205 0.57 +0.6
961,556 + MMJJ_RS05205 0.62 -0.4
961,565 - MMJJ_RS05205 0.64 +1.0
961,566 + MMJJ_RS05205 0.65 -2.7
961,566 + MMJJ_RS05205 0.65 +2.4
961,574 + MMJJ_RS05205 0.66 -0.7
961,583 - MMJJ_RS05205 0.68 -2.5
961,583 - MMJJ_RS05205 0.68 -0.8
961,583 - MMJJ_RS05205 0.68 +2.0
961,583 - MMJJ_RS05205 0.68 -1.6
961,583 - MMJJ_RS05205 0.68 +0.5
961,584 + MMJJ_RS05205 0.69 -0.3
961,584 + MMJJ_RS05205 0.69 -0.5
961,585 - MMJJ_RS05205 0.69 -1.5
961,586 + MMJJ_RS05205 0.69 +1.7
961,586 + MMJJ_RS05205 0.69 -0.7
961,586 + MMJJ_RS05205 0.69 -1.9
961,586 + MMJJ_RS05205 0.69 +0.0
961,586 + MMJJ_RS05205 0.69 +2.3
961,589 + MMJJ_RS05205 0.70 +0.6
961,589 + MMJJ_RS05205 0.70 -3.9
961,589 + MMJJ_RS05205 0.70 -0.2
961,589 + MMJJ_RS05205 0.70 -4.6
961,691 + +1.7
961,706 - -0.2
961,737 - -1.6
961,763 - +1.4
961,764 + +2.7
961,767 - -0.5
961,768 + +3.6
962,146 - MMJJ_RS05210 0.39 -1.6

Or see this region's nucleotide sequence