Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04225

Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Nitrofurantoin 0.025 mM
785,269	-		MMJJ_RS04215	0.68	-1.8
785,269	-		MMJJ_RS04215	0.68	+2.6
785,269	-		MMJJ_RS04215	0.68	-0.5
785,269	-		MMJJ_RS04215	0.68	+2.6
785,269	-		MMJJ_RS04215	0.68	-3.0
785,319	+		MMJJ_RS04215	0.74	-3.5
785,339	+		MMJJ_RS04215	0.76	+0.8
785,340	-		MMJJ_RS04215	0.76	+2.0
785,340	-		MMJJ_RS04215	0.76	-3.4
785,371	-		MMJJ_RS04215	0.80	-3.3
785,372	+		MMJJ_RS04215	0.80	-1.3
785,397	+		MMJJ_RS04215	0.82	+1.0
785,400	+		MMJJ_RS04215	0.83	-3.4
785,526	+				+0.2
785,526	+				+2.8
785,568	+				-0.5
785,568	+				-0.3
785,572	-				-4.7
785,572	-				-0.4
785,573	+				-2.3
785,573	+				-0.9
785,575	-				+2.3
785,575	-				-3.5
785,575	-				+1.7
785,575	-				-0.5
785,575	-				+0.5
785,575	-				+4.8
785,575	-				-3.8
785,576	+				+3.3
785,576	+				+4.3
785,595	-				-0.7
785,595	-				-3.8
785,595	-				-0.4
785,595	-				-2.9
785,596	+				+2.5
785,597	-				-2.5
785,598	+				+0.8
785,598	+				+0.8
785,598	+				-1.5
785,600	-				-2.3
785,600	-				-1.5
785,600	-				+2.1
785,600	-				+0.8
785,600	-				+1.9
785,600	-				+3.9
785,600	-				-0.4
785,601	+				-3.9
785,601	+				-1.6
785,601	+				+3.1
785,601	+				+3.9
785,601	+				-0.4
785,601	+				+2.0
785,601	+				-2.3
785,601	+				-0.5
785,601	+				-0.7
785,601	+				-2.7
785,601	+				-2.7
785,601	+				+0.9
785,605	-				-0.5
785,621	-				+2.2
785,621	-				+1.1
785,622	+				-2.3
785,624	-				-2.6
785,624	-				-2.9
785,624	-				-3.7
785,624	-				-1.0
785,624	-				-3.6
785,625	+				+0.5
785,625	+				-4.6
785,625	+				+0.9
785,625	+				+1.4
785,625	+				-0.1
785,625	+				+1.6
785,625	+				-4.9
785,628	-				+3.6
785,631	-				+1.2
785,633	-				-1.5
785,633	-				-4.2
785,634	+				-0.9
785,634	+				-1.0
785,634	+				+2.8
785,637	-				-2.1
785,638	+				-3.5
785,639	-				+0.1
785,640	+				-0.0
785,640	+				+1.3
785,642	-				+0.4
785,642	-				-0.1
785,642	-				-3.3
785,642	-				-2.8
785,642	-				+1.1
785,643	+				-1.3
785,643	+				+0.2
785,643	+				+0.2
785,649	-				+1.9
785,650	+				-3.1
785,654	-				-2.0
785,654	-				+2.7
785,655	+				-0.7
785,655	+				+3.1
785,655	+				-0.3
785,658	-				+0.5
785,658	-				-1.3
785,658	-				+1.5
785,658	-				-2.7
785,659	+				-1.4
785,659	+				-3.5
785,659	+				+0.9
785,659	+				+3.7
785,659	+				+1.4
785,663	-				+1.2
785,664	+				-1.9
785,665	-				-2.0
785,665	-				+1.7
785,665	-				+2.6
785,665	-				+1.3
785,665	-				-1.4
785,665	-				-0.9
785,665	-				-2.9
785,665	-				-3.8
785,666	+				+1.5
785,666	+				+1.3
785,666	+				+0.7
785,666	+				+3.9
785,666	+				+2.3
785,666	+				+0.8
785,666	+				+1.6
785,666	+				-0.0
785,668	-				-0.9
785,668	-				+1.2
785,669	+				-0.2
785,669	+				-3.3
785,669	+				-2.9
785,671	+				+1.8
785,684	-				+1.5
785,684	-				+1.5
785,685	+				-1.5
785,685	+				+1.2
785,711	-				-0.9
785,712	+				-0.1
785,736	+				-0.1
785,786	-		MMJJ_RS04220	0.17	+1.3
785,825	-		MMJJ_RS04220	0.24	-1.9
785,838	+		MMJJ_RS04220	0.26	+3.4
785,845	+		MMJJ_RS04220	0.28	-1.3
785,880	-				+0.5
785,881	+				+2.5
785,892	+		MMJJ_RS04220	0.36	-0.8
785,912	-		MMJJ_RS04220	0.40	-0.6
785,912	-		MMJJ_RS04220	0.40	-1.6
785,980	-		MMJJ_RS04220	0.52	+1.4
785,985	+		MMJJ_RS04220	0.53	-0.3
785,985	+		MMJJ_RS04220	0.53	+2.6
785,985	+		MMJJ_RS04220	0.53	-2.0
786,013	-		MMJJ_RS04220	0.58	-3.0
786,013	-		MMJJ_RS04220	0.58	-1.1
786,013	-		MMJJ_RS04220	0.58	+0.2
786,015	-		MMJJ_RS04220	0.58	+0.8
786,016	+		MMJJ_RS04220	0.58	-2.3
786,016	+		MMJJ_RS04220	0.58	-3.5
786,016	+		MMJJ_RS04220	0.58	+2.0
786,016	+		MMJJ_RS04220	0.58	-0.0
786,016	+		MMJJ_RS04220	0.58	+0.5
786,016	+		MMJJ_RS04220	0.58	-1.1
786,016	+		MMJJ_RS04220	0.58	-1.2
786,016	+		MMJJ_RS04220	0.58	-0.0
786,106	-		MMJJ_RS04220	0.75	-2.7
786,129	+		MMJJ_RS04220	0.79	+1.5
786,229	-				-3.7
786,229	-				-1.5
786,229	-				+2.4
786,230	+				+0.5
786,231	-				-1.0
786,231	-				+0.2
786,232	+				+1.1
786,243	-				-2.2
786,248	+				-2.9
786,275	+				-0.4
786,286	-				-3.4
786,287	+				-0.4
786,294	-				-0.9
786,303	-				-3.6
786,303	-				+1.7
786,305	-				-2.5
786,325	+				-1.3
786,335	+				+0.3
786,345	-				-2.3
786,383	+				+3.3
786,441	-		MMJJ_RS04225	0.15	+0.9
786,442	+		MMJJ_RS04225	0.15	+0.9
786,485	+		MMJJ_RS04225	0.18	-0.1
786,542	-		MMJJ_RS04225	0.23	-2.7
786,542	-		MMJJ_RS04225	0.23	-1.5
786,565	+		MMJJ_RS04225	0.25	+0.3
786,588	-		MMJJ_RS04225	0.27	+2.4
786,588	-		MMJJ_RS04225	0.27	-1.5
786,614	+		MMJJ_RS04225	0.29	-0.1
786,648	-		MMJJ_RS04225	0.31	-1.9
786,648	-		MMJJ_RS04225	0.31	-1.3
786,648	-		MMJJ_RS04225	0.31	-1.9
786,649	+		MMJJ_RS04225	0.31	+2.0
786,654	+		MMJJ_RS04225	0.32	+1.5
786,759	-		MMJJ_RS04225	0.40	+0.5
786,759	-		MMJJ_RS04225	0.40	+0.3
786,776	+		MMJJ_RS04225	0.42	-0.2
786,814	+		MMJJ_RS04225	0.45	-1.6
786,898	-		MMJJ_RS04225	0.52	-2.9
786,924	+		MMJJ_RS04225	0.54	-0.9
786,965	-		MMJJ_RS04225	0.57	+1.1
786,969	-		MMJJ_RS04225	0.57	-1.1
786,969	-		MMJJ_RS04225	0.57	-4.0
786,970	+		MMJJ_RS04225	0.58	-1.0
786,970	+		MMJJ_RS04225	0.58	+3.3
786,970	+		MMJJ_RS04225	0.58	-0.0
786,971	-		MMJJ_RS04225	0.58	-2.9
786,972	+		MMJJ_RS04225	0.58	-2.6
786,998	-		MMJJ_RS04225	0.60	-1.7
786,999	+		MMJJ_RS04225	0.60	-3.9
786,999	+		MMJJ_RS04225	0.60	+0.5
787,009	-		MMJJ_RS04225	0.61	-1.5
787,010	+		MMJJ_RS04225	0.61	+2.4
787,055	-		MMJJ_RS04225	0.64	+0.7
787,149	-		MMJJ_RS04225	0.72	-4.0
787,150	+		MMJJ_RS04225	0.72	+1.3
787,154	-		MMJJ_RS04225	0.73	+3.0
787,155	+		MMJJ_RS04225	0.73	-3.7
787,155	+		MMJJ_RS04225	0.73	+3.8
787,157	-		MMJJ_RS04225	0.73	-0.1
787,202	-		MMJJ_RS04225	0.76	+1.9
787,266	-		MMJJ_RS04225	0.82	-1.9
787,344	-		MMJJ_RS04225	0.88	+0.2
787,345	+		MMJJ_RS04225	0.88	-1.5
787,345	+		MMJJ_RS04225	0.88	-1.4
787,352	+		MMJJ_RS04225	0.89	+2.5
787,359	-		MMJJ_RS04225	0.89	-1.3
787,360	+		MMJJ_RS04225	0.89	-2.5
787,405	+				+0.3
787,405	+				+4.1
787,405	+				-3.7
787,491	-				-0.4
787,495	-				+0.8
787,502	+				-2.2
787,535	+				-2.1
787,583	-				+1.2
787,583	-				+1.4
787,584	+				+1.7
787,584	+				+2.2
787,585	-				-1.9
787,585	-				-0.6
787,585	-				+3.2
787,585	-				-0.8
787,585	-				-1.6
787,585	-				-2.8
787,585	-				+1.6
787,585	-				-0.2
787,585	-				+1.6
787,585	-				-0.9
787,585	-				-0.5
787,585	-				+1.4
787,585	-				-0.5
787,585	-				+2.7
787,585	-				+1.2
787,585	-				-0.3
787,585	-				-3.1
787,586	+				+3.7
787,586	+				-0.4
787,586	+				-2.9
787,586	+				-2.2
787,586	+				-1.3
787,586	+				-0.9
787,586	+				+1.4
787,586	+				+0.9
787,586	+				-2.4
787,586	+				+1.1
787,586	+				+4.0
787,586	+				-1.0
787,586	+				-0.2
787,586	+				+0.1
787,586	+				-1.1
787,587	-				-1.5
787,587	-				-2.9
787,587	-				-0.0
787,587	-				-0.8
787,587	-				-0.4
787,587	-				+3.0
787,587	-				-0.5
787,587	-				-1.0
787,587	-				+2.1
787,587	-				+0.1
787,587	-				+2.3
787,587	-				-1.1
787,587	-				-1.7
787,587	-				+0.5
787,587	-				-3.6
787,587	-				-2.5
787,587	-				+0.7
787,587	-				+0.2
787,587	-				-1.5
787,587	-				-1.5
787,588	+				-0.5
787,588	+				-0.7
787,588	+				-2.1
787,588	+				-1.0
787,588	+				-1.5
787,588	+				-2.4
787,588	+				-1.1
787,588	+				-2.2
787,588	+				+1.7
787,588	+				-2.6
787,588	+				+2.3
787,588	+				+2.8
787,588	+				+3.2
787,589	-				+1.9
787,589	-				+0.5
787,589	-				+2.4
787,589	-				+1.5
787,589	-				-0.5
787,589	-				+1.5
787,589	-				-1.1
787,589	-				-2.1
787,589	-				+0.9
787,589	-				+1.5
787,589	-				-2.0
787,589	-				-0.1
787,590	+				+0.5
787,590	+				+2.8
787,590	+				+1.1
787,590	+				-1.1
787,590	+				-0.1
787,590	+				+2.6
787,590	+				-1.7
787,590	+				-4.5
787,590	+				-0.5
787,590	+				+4.1
787,590	+				+1.2
787,590	+				-0.4
787,590	+				-0.2
787,590	+				+1.5
787,591	-				-2.2
787,591	-				-1.9
787,591	-				+2.5
787,591	-				+1.2
787,592	+				-3.0
787,592	+				-1.1
787,592	+				-1.1
787,592	+				-0.6
787,592	+				+3.3
787,592	+				-3.2
787,592	+				+1.6
787,629	-				-0.8
787,637	+				+2.0
787,644	-				-1.1
787,645	+				+1.2
787,645	+				-0.5
787,647	+				+3.7
787,647	+				-0.4
787,647	+				+2.9
787,720	-				+0.2
787,788	+		MMJJ_RS04230	0.12	+0.8
787,788	+		MMJJ_RS04230	0.12	-1.5
787,812	-		MMJJ_RS04230	0.14	-3.9
787,812	-		MMJJ_RS04230	0.14	-1.5
787,812	-		MMJJ_RS04230	0.14	-0.9
787,813	+		MMJJ_RS04230	0.14	-1.6
787,814	-		MMJJ_RS04230	0.14	+1.4
787,814	-		MMJJ_RS04230	0.14	+0.8
787,814	-		MMJJ_RS04230	0.14	-0.2
787,815	+		MMJJ_RS04230	0.15	+0.8
787,815	+		MMJJ_RS04230	0.15	+2.2
787,815	+		MMJJ_RS04230	0.15	+3.5
787,815	+		MMJJ_RS04230	0.15	+1.3
787,815	+		MMJJ_RS04230	0.15	+1.0
787,851	+		MMJJ_RS04230	0.18	-0.7
787,851	+		MMJJ_RS04230	0.18	-3.1
787,853	-		MMJJ_RS04230	0.18	+0.9
787,853	-		MMJJ_RS04230	0.18	-2.3
787,855	-		MMJJ_RS04230	0.18	-3.4
787,890	+		MMJJ_RS04230	0.21	+1.1
787,890	+		MMJJ_RS04230	0.21	+1.6
787,892	+		MMJJ_RS04230	0.21	-1.9
787,899	+		MMJJ_RS04230	0.22	+1.7
788,008	-		MMJJ_RS04230	0.31	-1.7
788,014	-		MMJJ_RS04230	0.32	+2.0
788,014	-		MMJJ_RS04230	0.32	-1.7
788,019	-		MMJJ_RS04230	0.32	-0.2
788,019	-		MMJJ_RS04230	0.32	-2.3
788,020	+		MMJJ_RS04230	0.32	-4.8
788,020	+		MMJJ_RS04230	0.32	-2.4
788,020	+		MMJJ_RS04230	0.32	+0.6
788,020	+		MMJJ_RS04230	0.32	+1.5
788,024	-		MMJJ_RS04230	0.33	-0.7
788,025	+		MMJJ_RS04230	0.33	-1.9
788,044	-		MMJJ_RS04230	0.35	-1.0
788,049	+		MMJJ_RS04230	0.35	-3.9
788,049	+		MMJJ_RS04230	0.35	+2.7
788,049	+		MMJJ_RS04230	0.35	-2.6
788,049	+		MMJJ_RS04230	0.35	-1.2
788,049	+		MMJJ_RS04230	0.35	-1.3
788,049	+		MMJJ_RS04230	0.35	+2.1
788,049	+		MMJJ_RS04230	0.35	-3.5
788,049	+		MMJJ_RS04230	0.35	-2.5
788,049	+		MMJJ_RS04230	0.35	+3.8
788,052	-		MMJJ_RS04230	0.35	+0.7
788,053	+		MMJJ_RS04230	0.35	+1.4
788,053	+		MMJJ_RS04230	0.35	+0.7
788,053	+		MMJJ_RS04230	0.35	-2.4
788,292	+		MMJJ_RS04230	0.56	-0.2
788,333	-		MMJJ_RS04230	0.60	-0.0
788,333	-		MMJJ_RS04230	0.60	-1.0
788,333	-		MMJJ_RS04230	0.60	+7.4
788,334	+		MMJJ_RS04230	0.60	-1.9
788,334	+		MMJJ_RS04230	0.60	-4.0
788,371	+		MMJJ_RS04230	0.63	+0.5
788,375	+		MMJJ_RS04230	0.64	+2.2
788,400	+		MMJJ_RS04230	0.66	-0.5
788,484	+		MMJJ_RS04230	0.73	+0.1