Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04175 and MMJJ_RS04180 are separated by 120 nucleotides MMJJ_RS04180 and MMJJ_RS04185 are separated by 2 nucleotides
MMJJ_RS04175: MMJJ_RS04175 - hypothetical protein, at 776,880 to 777,617
_RS04175
MMJJ_RS04180: MMJJ_RS04180 - metalloregulator ArsR/SmtB family transcription factor, at 777,738 to 778,082
_RS04180
MMJJ_RS04185: MMJJ_RS04185 - cadmium-translocating P-type ATPase, at 778,085 to 780,160
_RS04185
Position (kb) 777
778
779 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 776.751 kb on + strand at 776.756 kb on + strand at 776.756 kb on + strand at 776.766 kb on - strand at 776.766 kb on - strand at 776.766 kb on - strand at 776.766 kb on - strand at 776.766 kb on - strand at 776.766 kb on - strand at 776.767 kb on + strand at 776.767 kb on + strand at 776.788 kb on - strand at 776.809 kb on + strand at 776.850 kb on - strand at 776.882 kb on + strand at 776.975 kb on + strand, within MMJJ_RS04175 at 776.989 kb on + strand, within MMJJ_RS04175 at 777.112 kb on + strand, within MMJJ_RS04175 at 777.209 kb on - strand, within MMJJ_RS04175 at 777.209 kb on - strand, within MMJJ_RS04175 at 777.234 kb on + strand, within MMJJ_RS04175 at 777.234 kb on + strand, within MMJJ_RS04175 at 777.309 kb on + strand, within MMJJ_RS04175 at 777.393 kb on - strand, within MMJJ_RS04175 at 777.396 kb on - strand, within MMJJ_RS04175 at 777.403 kb on + strand, within MMJJ_RS04175 at 777.454 kb on + strand, within MMJJ_RS04175 at 777.465 kb on - strand, within MMJJ_RS04175 at 777.492 kb on - strand, within MMJJ_RS04175 at 777.493 kb on + strand, within MMJJ_RS04175 at 777.534 kb on + strand, within MMJJ_RS04175 at 777.538 kb on + strand, within MMJJ_RS04175 at 777.538 kb on + strand, within MMJJ_RS04175 at 777.554 kb on - strand at 777.555 kb on + strand at 777.555 kb on + strand at 777.556 kb on - strand at 777.556 kb on - strand at 777.557 kb on + strand at 777.557 kb on + strand at 777.557 kb on + strand at 777.557 kb on + strand at 777.576 kb on - strand at 777.577 kb on + strand at 777.577 kb on + strand at 777.617 kb on - strand at 777.617 kb on - strand at 777.618 kb on + strand at 777.618 kb on + strand at 777.654 kb on + strand at 777.654 kb on + strand at 777.654 kb on + strand at 777.654 kb on + strand at 777.661 kb on - strand at 777.678 kb on - strand at 777.680 kb on - strand at 777.681 kb on + strand at 777.681 kb on + strand at 777.688 kb on - strand at 777.696 kb on - strand at 777.697 kb on + strand at 777.699 kb on + strand at 777.699 kb on + strand at 777.901 kb on - strand, within MMJJ_RS04180 at 777.932 kb on - strand, within MMJJ_RS04180 at 777.932 kb on - strand, within MMJJ_RS04180 at 778.084 kb on - strand at 778.085 kb on + strand at 778.094 kb on - strand at 778.095 kb on + strand at 778.246 kb on + strand at 778.249 kb on + strand at 778.249 kb on + strand at 778.276 kb on + strand at 778.276 kb on + strand at 778.302 kb on - strand, within MMJJ_RS04185 at 778.403 kb on + strand, within MMJJ_RS04185 at 778.403 kb on + strand, within MMJJ_RS04185 at 778.425 kb on - strand, within MMJJ_RS04185 at 778.425 kb on - strand, within MMJJ_RS04185 at 778.425 kb on - strand, within MMJJ_RS04185 at 778.425 kb on - strand, within MMJJ_RS04185 at 778.425 kb on - strand, within MMJJ_RS04185 at 778.426 kb on + strand, within MMJJ_RS04185 at 778.430 kb on - strand, within MMJJ_RS04185 at 778.431 kb on + strand, within MMJJ_RS04185 at 778.434 kb on - strand, within MMJJ_RS04185 at 778.434 kb on - strand, within MMJJ_RS04185 at 778.435 kb on + strand, within MMJJ_RS04185 at 778.435 kb on + strand, within MMJJ_RS04185 at 778.435 kb on + strand, within MMJJ_RS04185 at 778.435 kb on + strand, within MMJJ_RS04185 at 778.435 kb on + strand, within MMJJ_RS04185 at 778.435 kb on + strand, within MMJJ_RS04185 at 778.435 kb on + strand, within MMJJ_RS04185 at 778.437 kb on - strand, within MMJJ_RS04185 at 778.438 kb on + strand, within MMJJ_RS04185 at 778.438 kb on + strand, within MMJJ_RS04185 at 778.438 kb on + strand, within MMJJ_RS04185 at 778.452 kb on - strand, within MMJJ_RS04185 at 778.456 kb on - strand, within MMJJ_RS04185 at 778.570 kb on + strand, within MMJJ_RS04185 at 778.570 kb on + strand, within MMJJ_RS04185 at 778.575 kb on - strand, within MMJJ_RS04185 at 778.580 kb on - strand, within MMJJ_RS04185 at 778.606 kb on - strand, within MMJJ_RS04185 at 778.717 kb on + strand, within MMJJ_RS04185 at 778.733 kb on + strand, within MMJJ_RS04185 at 778.826 kb on + strand, within MMJJ_RS04185 at 778.857 kb on - strand, within MMJJ_RS04185 at 778.879 kb on + strand, within MMJJ_RS04185 at 778.964 kb on + strand, within MMJJ_RS04185 at 778.964 kb on + strand, within MMJJ_RS04185 at 778.991 kb on + strand, within MMJJ_RS04185 at 779.015 kb on + strand, within MMJJ_RS04185 at 779.023 kb on - strand, within MMJJ_RS04185 at 779.068 kb on + strand, within MMJJ_RS04185
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Nitrofurantoin 0.025 mM remove 776,751 + +1.7 776,756 + -0.8 776,756 + +2.8 776,766 - -1.5 776,766 - -2.8 776,766 - -0.1 776,766 - +3.1 776,766 - -1.5 776,766 - +1.4 776,767 + +0.2 776,767 + +1.4 776,788 - +0.3 776,809 + +4.7 776,850 - -3.6 776,882 + +3.6 776,975 + MMJJ_RS04175 0.13 -0.1 776,989 + MMJJ_RS04175 0.15 -0.9 777,112 + MMJJ_RS04175 0.31 -0.9 777,209 - MMJJ_RS04175 0.45 -3.5 777,209 - MMJJ_RS04175 0.45 +1.3 777,234 + MMJJ_RS04175 0.48 -1.5 777,234 + MMJJ_RS04175 0.48 +3.4 777,309 + MMJJ_RS04175 0.58 -3.0 777,393 - MMJJ_RS04175 0.70 -0.2 777,396 - MMJJ_RS04175 0.70 -1.3 777,403 + MMJJ_RS04175 0.71 +2.2 777,454 + MMJJ_RS04175 0.78 -2.4 777,465 - MMJJ_RS04175 0.79 +0.6 777,492 - MMJJ_RS04175 0.83 -0.2 777,493 + MMJJ_RS04175 0.83 -3.7 777,534 + MMJJ_RS04175 0.89 -2.1 777,538 + MMJJ_RS04175 0.89 +1.5 777,538 + MMJJ_RS04175 0.89 +2.0 777,554 - -1.2 777,555 + -1.9 777,555 + +1.3 777,556 - +1.1 777,556 - +2.5 777,557 + +0.0 777,557 + -1.2 777,557 + -0.2 777,557 + -1.2 777,576 - +1.2 777,577 + +0.6 777,577 + -2.1 777,617 - -1.4 777,617 - -0.4 777,618 + +1.0 777,618 + -0.0 777,654 + +1.6 777,654 + -3.7 777,654 + -1.7 777,654 + +0.5 777,661 - +2.3 777,678 - +0.7 777,680 - -0.4 777,681 + +0.8 777,681 + +1.8 777,688 - +1.8 777,696 - -0.5 777,697 + -1.3 777,699 + +0.5 777,699 + +1.8 777,901 - MMJJ_RS04180 0.47 -0.5 777,932 - MMJJ_RS04180 0.56 -3.3 777,932 - MMJJ_RS04180 0.56 -1.4 778,084 - +0.7 778,085 + -0.7 778,094 - -1.1 778,095 + -2.5 778,246 + -2.0 778,249 + +2.1 778,249 + +0.5 778,276 + +1.3 778,276 + -2.7 778,302 - MMJJ_RS04185 0.10 -2.1 778,403 + MMJJ_RS04185 0.15 +3.8 778,403 + MMJJ_RS04185 0.15 +0.7 778,425 - MMJJ_RS04185 0.16 +1.3 778,425 - MMJJ_RS04185 0.16 -2.5 778,425 - MMJJ_RS04185 0.16 +0.5 778,425 - MMJJ_RS04185 0.16 +0.3 778,425 - MMJJ_RS04185 0.16 +2.7 778,426 + MMJJ_RS04185 0.16 -0.1 778,430 - MMJJ_RS04185 0.17 +2.7 778,431 + MMJJ_RS04185 0.17 +0.6 778,434 - MMJJ_RS04185 0.17 +0.1 778,434 - MMJJ_RS04185 0.17 -2.3 778,435 + MMJJ_RS04185 0.17 +2.1 778,435 + MMJJ_RS04185 0.17 -2.0 778,435 + MMJJ_RS04185 0.17 -1.1 778,435 + MMJJ_RS04185 0.17 -2.6 778,435 + MMJJ_RS04185 0.17 +0.5 778,435 + MMJJ_RS04185 0.17 -0.8 778,435 + MMJJ_RS04185 0.17 -0.5 778,437 - MMJJ_RS04185 0.17 -3.2 778,438 + MMJJ_RS04185 0.17 -0.8 778,438 + MMJJ_RS04185 0.17 -1.7 778,438 + MMJJ_RS04185 0.17 -1.4 778,452 - MMJJ_RS04185 0.18 -1.1 778,456 - MMJJ_RS04185 0.18 +2.2 778,570 + MMJJ_RS04185 0.23 -1.5 778,570 + MMJJ_RS04185 0.23 +2.1 778,575 - MMJJ_RS04185 0.24 +1.9 778,580 - MMJJ_RS04185 0.24 +0.6 778,606 - MMJJ_RS04185 0.25 -0.9 778,717 + MMJJ_RS04185 0.30 +1.0 778,733 + MMJJ_RS04185 0.31 +0.6 778,826 + MMJJ_RS04185 0.36 +0.0 778,857 - MMJJ_RS04185 0.37 -1.0 778,879 + MMJJ_RS04185 0.38 -2.4 778,964 + MMJJ_RS04185 0.42 +1.3 778,964 + MMJJ_RS04185 0.42 -0.9 778,991 + MMJJ_RS04185 0.44 +0.4 779,015 + MMJJ_RS04185 0.45 -1.7 779,023 - MMJJ_RS04185 0.45 +1.9 779,068 + MMJJ_RS04185 0.47 +1.1
Or see this region's nucleotide sequence