Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03800 and MMJJ_RS03805 are separated by 11 nucleotides MMJJ_RS03805 and MMJJ_RS03810 overlap by 4 nucleotides MMJJ_RS03810 and MMJJ_RS03815 are separated by 72 nucleotides MMJJ_RS03815 and MMJJ_RS03820 are separated by 245 nucleotides
MMJJ_RS03800: MMJJ_RS03800 - aldolase, at 707,622 to 708,548
_RS03800
MMJJ_RS03805: MMJJ_RS03805 - hypothetical protein, at 708,560 to 708,745
_RS03805
MMJJ_RS03810: MMJJ_RS03810 - AIR synthase-related protein, at 708,742 to 710,085
_RS03810
MMJJ_RS03815: MMJJ_RS03815 - nascent polypeptide-associated complex protein, at 710,158 to 710,538
_RS03815
MMJJ_RS03820: MMJJ_RS03820 - hydrogenase formation protein HypD, at 710,784 to 711,866
_RS03820
Position (kb) 708
709
710
711 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 707.770 kb on - strand, within MMJJ_RS03800 at 707.913 kb on + strand, within MMJJ_RS03800 at 707.914 kb on - strand, within MMJJ_RS03800 at 707.920 kb on + strand, within MMJJ_RS03800 at 708.000 kb on + strand, within MMJJ_RS03800 at 708.005 kb on - strand, within MMJJ_RS03800 at 708.006 kb on + strand, within MMJJ_RS03800 at 708.006 kb on + strand, within MMJJ_RS03800 at 708.007 kb on - strand, within MMJJ_RS03800 at 708.010 kb on - strand, within MMJJ_RS03800 at 708.056 kb on - strand, within MMJJ_RS03800 at 708.056 kb on - strand, within MMJJ_RS03800 at 708.057 kb on + strand, within MMJJ_RS03800 at 708.057 kb on + strand, within MMJJ_RS03800 at 708.061 kb on - strand, within MMJJ_RS03800 at 708.061 kb on - strand, within MMJJ_RS03800 at 708.061 kb on - strand, within MMJJ_RS03800 at 708.061 kb on - strand, within MMJJ_RS03800 at 708.062 kb on + strand, within MMJJ_RS03800 at 708.062 kb on + strand, within MMJJ_RS03800 at 708.062 kb on + strand, within MMJJ_RS03800 at 708.062 kb on + strand, within MMJJ_RS03800 at 708.063 kb on - strand, within MMJJ_RS03800 at 708.064 kb on + strand, within MMJJ_RS03800 at 708.078 kb on - strand, within MMJJ_RS03800 at 708.117 kb on - strand, within MMJJ_RS03800 at 708.146 kb on + strand, within MMJJ_RS03800 at 708.146 kb on + strand, within MMJJ_RS03800 at 708.146 kb on + strand, within MMJJ_RS03800 at 708.216 kb on + strand, within MMJJ_RS03800 at 708.257 kb on + strand, within MMJJ_RS03800 at 708.293 kb on - strand, within MMJJ_RS03800 at 708.294 kb on + strand, within MMJJ_RS03800 at 708.294 kb on + strand, within MMJJ_RS03800 at 708.323 kb on - strand, within MMJJ_RS03800 at 708.324 kb on + strand, within MMJJ_RS03800 at 708.332 kb on + strand, within MMJJ_RS03800 at 708.488 kb on + strand at 708.524 kb on - strand at 708.525 kb on + strand at 708.525 kb on + strand at 708.525 kb on + strand at 708.526 kb on - strand at 708.529 kb on + strand at 708.556 kb on - strand at 708.557 kb on + strand at 708.576 kb on - strand at 708.577 kb on + strand at 708.587 kb on + strand, within MMJJ_RS03805 at 708.675 kb on - strand, within MMJJ_RS03805 at 708.681 kb on - strand, within MMJJ_RS03805 at 708.682 kb on + strand, within MMJJ_RS03805 at 708.682 kb on + strand, within MMJJ_RS03805 at 708.718 kb on + strand, within MMJJ_RS03805 at 708.728 kb on + strand at 708.728 kb on + strand at 708.728 kb on + strand at 708.730 kb on - strand at 708.731 kb on + strand at 708.734 kb on + strand at 708.763 kb on - strand at 708.763 kb on - strand at 708.764 kb on + strand at 708.764 kb on + strand at 708.766 kb on - strand at 708.931 kb on - strand, within MMJJ_RS03810 at 709.268 kb on + strand, within MMJJ_RS03810 at 709.279 kb on - strand, within MMJJ_RS03810 at 709.473 kb on - strand, within MMJJ_RS03810 at 709.727 kb on + strand, within MMJJ_RS03810 at 709.885 kb on - strand, within MMJJ_RS03810 at 710.128 kb on + strand at 710.189 kb on + strand at 710.209 kb on - strand, within MMJJ_RS03815 at 710.210 kb on + strand, within MMJJ_RS03815 at 710.433 kb on - strand, within MMJJ_RS03815 at 710.434 kb on + strand, within MMJJ_RS03815 at 710.541 kb on - strand at 710.541 kb on - strand at 710.542 kb on + strand at 710.542 kb on + strand at 710.542 kb on + strand at 710.552 kb on - strand at 710.552 kb on - strand at 710.553 kb on + strand at 710.556 kb on - strand at 710.572 kb on + strand at 710.572 kb on + strand at 710.576 kb on - strand at 710.580 kb on - strand at 710.580 kb on - strand at 710.582 kb on - strand at 710.598 kb on - strand at 710.598 kb on - strand at 710.598 kb on - strand at 710.600 kb on - strand at 710.601 kb on + strand at 710.604 kb on - strand at 710.604 kb on - strand at 710.604 kb on - strand at 710.604 kb on - strand at 710.604 kb on - strand at 710.605 kb on + strand at 710.605 kb on + strand at 710.605 kb on + strand at 710.618 kb on + strand at 710.685 kb on - strand at 710.697 kb on + strand at 710.697 kb on + strand at 710.697 kb on + strand at 710.711 kb on + strand at 710.728 kb on - strand at 710.728 kb on - strand at 710.734 kb on - strand at 710.735 kb on + strand at 710.737 kb on + strand at 710.738 kb on - strand at 710.738 kb on - strand at 710.738 kb on - strand at 710.738 kb on - strand at 710.738 kb on - strand at 710.739 kb on + strand at 710.739 kb on + strand at 710.739 kb on + strand at 710.739 kb on + strand at 710.739 kb on + strand at 710.739 kb on + strand at 710.739 kb on + strand at 710.741 kb on - strand at 710.741 kb on - strand at 710.741 kb on - strand at 710.742 kb on + strand at 710.742 kb on + strand at 710.742 kb on + strand at 710.751 kb on - strand at 710.761 kb on + strand at 710.765 kb on - strand at 710.765 kb on - strand at 710.766 kb on + strand at 710.783 kb on - strand at 710.784 kb on + strand at 710.784 kb on + strand at 710.991 kb on + strand, within MMJJ_RS03820 at 711.066 kb on - strand at 711.066 kb on - strand at 711.067 kb on + strand, within MMJJ_RS03820 at 711.067 kb on + strand, within MMJJ_RS03820
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Nitrofurantoin 0.025 mM remove 707,770 - MMJJ_RS03800 0.16 -1.7 707,913 + MMJJ_RS03800 0.31 -0.3 707,914 - MMJJ_RS03800 0.31 -0.8 707,920 + MMJJ_RS03800 0.32 -3.9 708,000 + MMJJ_RS03800 0.41 +1.5 708,005 - MMJJ_RS03800 0.41 -0.5 708,006 + MMJJ_RS03800 0.41 +0.5 708,006 + MMJJ_RS03800 0.41 -3.6 708,007 - MMJJ_RS03800 0.42 +1.9 708,010 - MMJJ_RS03800 0.42 -1.8 708,056 - MMJJ_RS03800 0.47 -1.2 708,056 - MMJJ_RS03800 0.47 -0.8 708,057 + MMJJ_RS03800 0.47 -3.2 708,057 + MMJJ_RS03800 0.47 -0.8 708,061 - MMJJ_RS03800 0.47 -2.4 708,061 - MMJJ_RS03800 0.47 +0.7 708,061 - MMJJ_RS03800 0.47 -0.8 708,061 - MMJJ_RS03800 0.47 +0.5 708,062 + MMJJ_RS03800 0.47 -1.9 708,062 + MMJJ_RS03800 0.47 -2.2 708,062 + MMJJ_RS03800 0.47 -3.9 708,062 + MMJJ_RS03800 0.47 +0.9 708,063 - MMJJ_RS03800 0.48 -2.9 708,064 + MMJJ_RS03800 0.48 -3.8 708,078 - MMJJ_RS03800 0.49 -0.9 708,117 - MMJJ_RS03800 0.53 -2.9 708,146 + MMJJ_RS03800 0.57 +0.3 708,146 + MMJJ_RS03800 0.57 -3.6 708,146 + MMJJ_RS03800 0.57 -1.7 708,216 + MMJJ_RS03800 0.64 -4.0 708,257 + MMJJ_RS03800 0.69 -2.3 708,293 - MMJJ_RS03800 0.72 -1.3 708,294 + MMJJ_RS03800 0.72 -2.0 708,294 + MMJJ_RS03800 0.72 -1.7 708,323 - MMJJ_RS03800 0.76 -3.4 708,324 + MMJJ_RS03800 0.76 -1.5 708,332 + MMJJ_RS03800 0.77 +0.2 708,488 + -1.9 708,524 - +0.5 708,525 + -0.4 708,525 + -1.5 708,525 + +2.0 708,526 - -1.1 708,529 + +0.5 708,556 - -4.5 708,557 + -0.7 708,576 - +2.5 708,577 + +1.3 708,587 + MMJJ_RS03805 0.15 -0.1 708,675 - MMJJ_RS03805 0.62 -3.2 708,681 - MMJJ_RS03805 0.65 -2.4 708,682 + MMJJ_RS03805 0.66 -0.6 708,682 + MMJJ_RS03805 0.66 -3.5 708,718 + MMJJ_RS03805 0.85 -2.3 708,728 + -2.0 708,728 + -0.5 708,728 + -2.4 708,730 - -1.3 708,731 + -2.7 708,734 + -3.0 708,763 - +2.2 708,763 - +1.1 708,764 + +1.5 708,764 + +0.1 708,766 - +1.5 708,931 - MMJJ_RS03810 0.14 +0.5 709,268 + MMJJ_RS03810 0.39 -0.8 709,279 - MMJJ_RS03810 0.40 -1.1 709,473 - MMJJ_RS03810 0.54 -1.5 709,727 + MMJJ_RS03810 0.73 -1.5 709,885 - MMJJ_RS03810 0.85 -0.5 710,128 + +1.5 710,189 + -0.5 710,209 - MMJJ_RS03815 0.13 -0.1 710,210 + MMJJ_RS03815 0.14 +0.5 710,433 - MMJJ_RS03815 0.72 -1.3 710,434 + MMJJ_RS03815 0.72 +0.5 710,541 - -0.8 710,541 - -2.0 710,542 + +0.1 710,542 + -1.2 710,542 + -1.3 710,552 - -3.3 710,552 - -3.8 710,553 + -1.1 710,556 - -0.3 710,572 + -2.0 710,572 + -0.1 710,576 - +0.8 710,580 - -2.2 710,580 - -0.2 710,582 - +0.4 710,598 - -1.0 710,598 - -2.0 710,598 - -0.2 710,600 - -2.8 710,601 + -1.8 710,604 - +0.4 710,604 - +0.3 710,604 - -3.7 710,604 - +0.9 710,604 - -2.7 710,605 + -0.7 710,605 + -0.8 710,605 + -3.3 710,618 + -2.8 710,685 - +0.8 710,697 + -1.6 710,697 + -1.3 710,697 + +4.5 710,711 + +2.2 710,728 - +1.2 710,728 - +2.4 710,734 - +1.3 710,735 + -2.0 710,737 + +2.2 710,738 - -0.1 710,738 - -1.3 710,738 - +1.9 710,738 - -1.5 710,738 - +1.5 710,739 + -1.1 710,739 + -3.8 710,739 + -0.9 710,739 + -2.0 710,739 + +2.0 710,739 + -0.4 710,739 + +0.2 710,741 - -0.3 710,741 - -3.9 710,741 - -2.6 710,742 + +1.3 710,742 + +1.3 710,742 + +3.9 710,751 - -1.3 710,761 + +1.3 710,765 - -0.0 710,765 - -2.1 710,766 + +1.0 710,783 - +2.5 710,784 + +0.5 710,784 + +0.5 710,991 + MMJJ_RS03820 0.19 -1.3 711,066 - +1.5 711,066 - +1.5 711,067 + MMJJ_RS03820 0.26 +1.5 711,067 + MMJJ_RS03820 0.26 +0.5
Or see this region's nucleotide sequence