Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03410

Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03405 and MMJJ_RS03410 overlap by 8 nucleotidesMMJJ_RS03410 and MMJJ_RS03415 are separated by 3 nucleotidesMMJJ_RS03415 and MMJJ_RS03420 overlap by 8 nucleotidesMMJJ_RS03420 and MMJJ_RS03425 are separated by 0 nucleotides MMJJ_RS03405: MMJJ_RS03405 - hypothetical protein, at 640,901 to 642,241 _RS03405 MMJJ_RS03410: MMJJ_RS03410 - hypothetical protein, at 642,234 to 642,650 _RS03410 MMJJ_RS03415: MMJJ_RS03415 - hypothetical protein, at 642,654 to 643,091 _RS03415 MMJJ_RS03420: MMJJ_RS03420 - hypothetical protein, at 643,084 to 643,359 _RS03420 MMJJ_RS03425: MMJJ_RS03425 - DUF2080 family transposase-associated protein, at 643,360 to 643,485 _RS03425 Position (kb) 642 643Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 641.234 kb on - strand, within MMJJ_RS03405at 641.236 kb on - strand, within MMJJ_RS03405at 641.236 kb on - strand, within MMJJ_RS03405at 641.237 kb on + strand, within MMJJ_RS03405at 641.348 kb on + strand, within MMJJ_RS03405at 641.349 kb on - strand, within MMJJ_RS03405at 641.349 kb on - strand, within MMJJ_RS03405at 641.349 kb on - strand, within MMJJ_RS03405at 641.370 kb on + strand, within MMJJ_RS03405at 641.370 kb on + strand, within MMJJ_RS03405at 641.370 kb on + strand, within MMJJ_RS03405at 641.372 kb on - strand, within MMJJ_RS03405at 641.373 kb on + strand, within MMJJ_RS03405at 641.374 kb on - strand, within MMJJ_RS03405at 641.374 kb on - strand, within MMJJ_RS03405at 641.374 kb on - strand, within MMJJ_RS03405at 641.374 kb on - strand, within MMJJ_RS03405at 641.375 kb on + strand, within MMJJ_RS03405at 641.375 kb on + strand, within MMJJ_RS03405at 641.375 kb on + strand, within MMJJ_RS03405at 641.375 kb on + strand, within MMJJ_RS03405at 641.375 kb on + strand, within MMJJ_RS03405at 641.422 kb on - strand, within MMJJ_RS03405at 641.423 kb on + strand, within MMJJ_RS03405at 641.423 kb on + strand, within MMJJ_RS03405at 641.438 kb on + strand, within MMJJ_RS03405at 641.487 kb on + strand, within MMJJ_RS03405at 641.509 kb on - strand, within MMJJ_RS03405at 641.510 kb on + strand, within MMJJ_RS03405at 641.513 kb on + strand, within MMJJ_RS03405at 641.513 kb on + strand, within MMJJ_RS03405at 641.513 kb on + strand, within MMJJ_RS03405at 641.514 kb on - strand, within MMJJ_RS03405at 641.517 kb on - strand, within MMJJ_RS03405at 641.607 kb on + strand, within MMJJ_RS03405at 641.697 kb on + strandat 641.728 kb on + strand, within MMJJ_RS03405at 641.735 kb on + strand, within MMJJ_RS03405at 641.735 kb on + strand, within MMJJ_RS03405at 641.737 kb on + strand, within MMJJ_RS03405at 641.777 kb on + strand, within MMJJ_RS03405at 641.789 kb on - strand, within MMJJ_RS03405at 641.879 kb on - strand, within MMJJ_RS03405at 641.903 kb on + strand, within MMJJ_RS03405at 641.907 kb on - strand, within MMJJ_RS03405at 642.103 kb on + strand, within MMJJ_RS03405at 642.161 kb on - strandat 642.208 kb on + strandat 642.238 kb on + strandat 642.238 kb on + strandat 642.285 kb on - strand, within MMJJ_RS03410at 642.329 kb on - strand, within MMJJ_RS03410at 642.368 kb on - strand, within MMJJ_RS03410at 642.420 kb on - strand, within MMJJ_RS03410at 642.508 kb on - strand, within MMJJ_RS03410at 642.540 kb on - strand, within MMJJ_RS03410at 642.595 kb on - strand, within MMJJ_RS03410at 642.656 kb on + strandat 642.734 kb on + strand, within MMJJ_RS03415at 642.741 kb on - strand, within MMJJ_RS03415at 642.795 kb on + strand, within MMJJ_RS03415at 642.821 kb on - strand, within MMJJ_RS03415at 642.821 kb on - strand, within MMJJ_RS03415at 642.873 kb on - strand, within MMJJ_RS03415at 642.891 kb on - strand, within MMJJ_RS03415at 642.899 kb on + strand, within MMJJ_RS03415at 642.899 kb on + strand, within MMJJ_RS03415at 642.951 kb on - strand, within MMJJ_RS03415at 642.951 kb on - strand, within MMJJ_RS03415at 642.951 kb on - strand, within MMJJ_RS03415at 642.957 kb on - strand, within MMJJ_RS03415at 642.958 kb on + strand, within MMJJ_RS03415at 642.988 kb on - strand, within MMJJ_RS03415at 643.065 kb on + strandat 643.071 kb on + strandat 643.071 kb on + strandat 643.108 kb on - strandat 643.116 kb on + strand, within MMJJ_RS03420at 643.116 kb on + strand, within MMJJ_RS03420at 643.116 kb on + strand, within MMJJ_RS03420at 643.133 kb on - strand, within MMJJ_RS03420at 643.134 kb on + strand, within MMJJ_RS03420at 643.134 kb on + strand, within MMJJ_RS03420at 643.188 kb on + strand, within MMJJ_RS03420at 643.213 kb on - strand, within MMJJ_RS03420at 643.214 kb on + strand, within MMJJ_RS03420at 643.214 kb on + strand, within MMJJ_RS03420at 643.214 kb on + strand, within MMJJ_RS03420at 643.217 kb on - strand, within MMJJ_RS03420at 643.217 kb on - strand, within MMJJ_RS03420at 643.218 kb on + strand, within MMJJ_RS03420at 643.232 kb on + strand, within MMJJ_RS03420at 643.238 kb on - strand, within MMJJ_RS03420at 643.239 kb on + strand, within MMJJ_RS03420at 643.279 kb on - strand, within MMJJ_RS03420at 643.280 kb on + strand, within MMJJ_RS03420at 643.312 kb on - strand, within MMJJ_RS03420at 643.313 kb on + strand, within MMJJ_RS03420at 643.313 kb on + strand, within MMJJ_RS03420at 643.317 kb on - strand, within MMJJ_RS03420at 643.317 kb on - strand, within MMJJ_RS03420at 643.317 kb on - strand, within MMJJ_RS03420at 643.317 kb on - strand, within MMJJ_RS03420at 643.318 kb on + strand, within MMJJ_RS03420at 643.319 kb on - strand, within MMJJ_RS03420at 643.320 kb on + strand, within MMJJ_RS03420at 643.320 kb on + strand, within MMJJ_RS03420at 643.362 kb on + strandat 643.393 kb on - strand, within MMJJ_RS03425at 643.395 kb on - strand, within MMJJ_RS03425at 643.404 kb on - strand, within MMJJ_RS03425at 643.405 kb on + strand, within MMJJ_RS03425at 643.466 kb on + strand, within MMJJ_RS03425at 643.591 kb on - strandat 643.591 kb on - strandat 643.591 kb on - strandat 643.591 kb on - strandat 643.592 kb on + strandat 643.592 kb on + strandat 643.592 kb on + strandat 643.592 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Nitrofurantoin 0.025 mM
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641,234 - MMJJ_RS03405 0.25 +1.0
641,236 - MMJJ_RS03405 0.25 +1.7
641,236 - MMJJ_RS03405 0.25 -1.9
641,237 + MMJJ_RS03405 0.25 +2.3
641,348 + MMJJ_RS03405 0.33 -0.9
641,349 - MMJJ_RS03405 0.33 +0.4
641,349 - MMJJ_RS03405 0.33 +1.8
641,349 - MMJJ_RS03405 0.33 +1.0
641,370 + MMJJ_RS03405 0.35 -1.1
641,370 + MMJJ_RS03405 0.35 -3.2
641,370 + MMJJ_RS03405 0.35 +3.4
641,372 - MMJJ_RS03405 0.35 +2.3
641,373 + MMJJ_RS03405 0.35 -1.3
641,374 - MMJJ_RS03405 0.35 +5.0
641,374 - MMJJ_RS03405 0.35 -2.7
641,374 - MMJJ_RS03405 0.35 -3.7
641,374 - MMJJ_RS03405 0.35 +2.7
641,375 + MMJJ_RS03405 0.35 +1.0
641,375 + MMJJ_RS03405 0.35 -2.1
641,375 + MMJJ_RS03405 0.35 +1.0
641,375 + MMJJ_RS03405 0.35 +3.6
641,375 + MMJJ_RS03405 0.35 -2.8
641,422 - MMJJ_RS03405 0.39 +2.0
641,423 + MMJJ_RS03405 0.39 -3.6
641,423 + MMJJ_RS03405 0.39 +1.2
641,438 + MMJJ_RS03405 0.40 -4.3
641,487 + MMJJ_RS03405 0.44 -2.4
641,509 - MMJJ_RS03405 0.45 -0.5
641,510 + MMJJ_RS03405 0.45 +0.9
641,513 + MMJJ_RS03405 0.46 +0.1
641,513 + MMJJ_RS03405 0.46 +1.2
641,513 + MMJJ_RS03405 0.46 -2.5
641,514 - MMJJ_RS03405 0.46 +1.0
641,517 - MMJJ_RS03405 0.46 +1.6
641,607 + MMJJ_RS03405 0.53 -1.1
641,697 + -0.1
641,728 + MMJJ_RS03405 0.62 -2.1
641,735 + MMJJ_RS03405 0.62 +0.4
641,735 + MMJJ_RS03405 0.62 +0.7
641,737 + MMJJ_RS03405 0.62 -0.6
641,777 + MMJJ_RS03405 0.65 -0.7
641,789 - MMJJ_RS03405 0.66 -0.5
641,879 - MMJJ_RS03405 0.73 +1.6
641,903 + MMJJ_RS03405 0.75 +2.1
641,907 - MMJJ_RS03405 0.75 -0.1
642,103 + MMJJ_RS03405 0.90 +1.5
642,161 - -0.1
642,208 + -2.1
642,238 + +3.4
642,238 + +1.1
642,285 - MMJJ_RS03410 0.12 +1.6
642,329 - MMJJ_RS03410 0.23 +3.2
642,368 - MMJJ_RS03410 0.32 -0.5
642,420 - MMJJ_RS03410 0.45 +2.0
642,508 - MMJJ_RS03410 0.66 -0.1
642,540 - MMJJ_RS03410 0.73 +1.8
642,595 - MMJJ_RS03410 0.87 -2.2
642,656 + -3.3
642,734 + MMJJ_RS03415 0.18 +0.2
642,741 - MMJJ_RS03415 0.20 -1.1
642,795 + MMJJ_RS03415 0.32 +1.5
642,821 - MMJJ_RS03415 0.38 +1.6
642,821 - MMJJ_RS03415 0.38 -1.1
642,873 - MMJJ_RS03415 0.50 +0.5
642,891 - MMJJ_RS03415 0.54 +2.2
642,899 + MMJJ_RS03415 0.56 +1.4
642,899 + MMJJ_RS03415 0.56 +1.5
642,951 - MMJJ_RS03415 0.68 +0.7
642,951 - MMJJ_RS03415 0.68 -2.1
642,951 - MMJJ_RS03415 0.68 -2.6
642,957 - MMJJ_RS03415 0.69 -2.4
642,958 + MMJJ_RS03415 0.69 +0.5
642,988 - MMJJ_RS03415 0.76 -1.5
643,065 + +0.3
643,071 + -3.2
643,071 + +0.8
643,108 - +0.1
643,116 + MMJJ_RS03420 0.12 +3.4
643,116 + MMJJ_RS03420 0.12 +1.5
643,116 + MMJJ_RS03420 0.12 -2.1
643,133 - MMJJ_RS03420 0.18 -2.3
643,134 + MMJJ_RS03420 0.18 -0.7
643,134 + MMJJ_RS03420 0.18 +2.8
643,188 + MMJJ_RS03420 0.38 -1.5
643,213 - MMJJ_RS03420 0.47 -2.9
643,214 + MMJJ_RS03420 0.47 -3.0
643,214 + MMJJ_RS03420 0.47 -1.9
643,214 + MMJJ_RS03420 0.47 +1.0
643,217 - MMJJ_RS03420 0.48 +1.1
643,217 - MMJJ_RS03420 0.48 -3.7
643,218 + MMJJ_RS03420 0.49 +4.0
643,232 + MMJJ_RS03420 0.54 -1.5
643,238 - MMJJ_RS03420 0.56 -2.8
643,239 + MMJJ_RS03420 0.56 +0.6
643,279 - MMJJ_RS03420 0.71 +3.0
643,280 + MMJJ_RS03420 0.71 -1.3
643,312 - MMJJ_RS03420 0.83 -3.4
643,313 + MMJJ_RS03420 0.83 -0.8
643,313 + MMJJ_RS03420 0.83 -2.8
643,317 - MMJJ_RS03420 0.84 -4.3
643,317 - MMJJ_RS03420 0.84 +1.0
643,317 - MMJJ_RS03420 0.84 -2.5
643,317 - MMJJ_RS03420 0.84 -0.9
643,318 + MMJJ_RS03420 0.85 +0.8
643,319 - MMJJ_RS03420 0.85 +1.4
643,320 + MMJJ_RS03420 0.86 +0.1
643,320 + MMJJ_RS03420 0.86 -0.9
643,362 + +3.0
643,393 - MMJJ_RS03425 0.26 +0.8
643,395 - MMJJ_RS03425 0.28 -1.0
643,404 - MMJJ_RS03425 0.35 +0.5
643,405 + MMJJ_RS03425 0.36 -1.8
643,466 + MMJJ_RS03425 0.84 -3.1
643,591 - -1.0
643,591 - +2.4
643,591 - -1.2
643,591 - +2.0
643,592 + +1.6
643,592 + -2.7
643,592 + +2.7
643,592 + -0.9

Or see this region's nucleotide sequence