Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03105 and MMJJ_RS03110 are separated by 150 nucleotides MMJJ_RS03110 and MMJJ_RS03115 are separated by 35 nucleotides MMJJ_RS03115 and MMJJ_RS03120 are separated by 67 nucleotides
MMJJ_RS03105: MMJJ_RS03105 - methyl-accepting chemotaxis protein, at 584,999 to 587,194
_RS03105
MMJJ_RS03110: MMJJ_RS03110 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase, at 587,345 to 588,622
_RS03110
MMJJ_RS03115: MMJJ_RS03115 - sulfopyruvate decarboxylase subunit alpha, at 588,658 to 589,161
_RS03115
MMJJ_RS03120: MMJJ_RS03120 - ribose-phosphate diphosphokinase, at 589,229 to 590,092
_RS03120
Position (kb) 587
588
589 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 586.373 kb on + strand, within MMJJ_RS03105 at 586.373 kb on + strand, within MMJJ_RS03105 at 586.373 kb on + strand, within MMJJ_RS03105 at 586.373 kb on + strand, within MMJJ_RS03105 at 586.376 kb on - strand, within MMJJ_RS03105 at 586.376 kb on - strand, within MMJJ_RS03105 at 586.377 kb on + strand, within MMJJ_RS03105 at 586.381 kb on - strand, within MMJJ_RS03105 at 586.381 kb on - strand, within MMJJ_RS03105 at 586.382 kb on + strand, within MMJJ_RS03105 at 586.382 kb on + strand, within MMJJ_RS03105 at 586.406 kb on - strand, within MMJJ_RS03105 at 586.407 kb on + strand, within MMJJ_RS03105 at 586.407 kb on + strand, within MMJJ_RS03105 at 586.410 kb on - strand, within MMJJ_RS03105 at 586.410 kb on - strand, within MMJJ_RS03105 at 586.410 kb on - strand, within MMJJ_RS03105 at 586.410 kb on - strand, within MMJJ_RS03105 at 586.410 kb on - strand, within MMJJ_RS03105 at 586.411 kb on + strand, within MMJJ_RS03105 at 586.411 kb on + strand, within MMJJ_RS03105 at 586.411 kb on + strand, within MMJJ_RS03105 at 586.411 kb on + strand, within MMJJ_RS03105 at 586.411 kb on + strand, within MMJJ_RS03105 at 586.483 kb on - strand, within MMJJ_RS03105 at 586.484 kb on + strand, within MMJJ_RS03105 at 586.485 kb on - strand, within MMJJ_RS03105 at 586.485 kb on - strand, within MMJJ_RS03105 at 586.485 kb on - strand, within MMJJ_RS03105 at 586.486 kb on + strand, within MMJJ_RS03105 at 586.488 kb on + strand, within MMJJ_RS03105 at 586.488 kb on + strand, within MMJJ_RS03105 at 586.488 kb on + strand, within MMJJ_RS03105 at 586.488 kb on + strand, within MMJJ_RS03105 at 586.488 kb on + strand, within MMJJ_RS03105 at 586.488 kb on + strand, within MMJJ_RS03105 at 586.490 kb on - strand, within MMJJ_RS03105 at 586.490 kb on - strand, within MMJJ_RS03105 at 586.490 kb on - strand, within MMJJ_RS03105 at 586.491 kb on + strand, within MMJJ_RS03105 at 586.491 kb on + strand, within MMJJ_RS03105 at 586.491 kb on + strand, within MMJJ_RS03105 at 586.491 kb on + strand, within MMJJ_RS03105 at 586.599 kb on + strand, within MMJJ_RS03105 at 586.600 kb on - strand, within MMJJ_RS03105 at 586.600 kb on - strand, within MMJJ_RS03105 at 586.601 kb on + strand, within MMJJ_RS03105 at 586.601 kb on + strand, within MMJJ_RS03105 at 586.603 kb on - strand, within MMJJ_RS03105 at 586.603 kb on - strand, within MMJJ_RS03105 at 586.624 kb on - strand, within MMJJ_RS03105 at 586.624 kb on - strand, within MMJJ_RS03105 at 586.625 kb on + strand, within MMJJ_RS03105 at 586.651 kb on + strand, within MMJJ_RS03105 at 586.651 kb on + strand at 586.651 kb on + strand, within MMJJ_RS03105 at 586.674 kb on - strand, within MMJJ_RS03105 at 586.674 kb on - strand, within MMJJ_RS03105 at 586.674 kb on - strand, within MMJJ_RS03105 at 586.674 kb on - strand, within MMJJ_RS03105 at 586.674 kb on - strand, within MMJJ_RS03105 at 586.674 kb on - strand, within MMJJ_RS03105 at 586.675 kb on + strand, within MMJJ_RS03105 at 586.675 kb on + strand, within MMJJ_RS03105 at 586.675 kb on + strand, within MMJJ_RS03105 at 586.675 kb on + strand, within MMJJ_RS03105 at 586.675 kb on + strand, within MMJJ_RS03105 at 586.678 kb on - strand, within MMJJ_RS03105 at 586.678 kb on - strand, within MMJJ_RS03105 at 586.678 kb on - strand, within MMJJ_RS03105 at 586.679 kb on + strand, within MMJJ_RS03105 at 586.720 kb on - strand, within MMJJ_RS03105 at 586.742 kb on - strand, within MMJJ_RS03105 at 586.818 kb on + strand, within MMJJ_RS03105 at 586.818 kb on + strand, within MMJJ_RS03105 at 586.824 kb on + strand, within MMJJ_RS03105 at 586.825 kb on - strand, within MMJJ_RS03105 at 586.825 kb on - strand, within MMJJ_RS03105 at 586.826 kb on + strand, within MMJJ_RS03105 at 586.875 kb on + strand, within MMJJ_RS03105 at 586.891 kb on - strand, within MMJJ_RS03105 at 586.934 kb on - strand, within MMJJ_RS03105 at 586.935 kb on + strand, within MMJJ_RS03105 at 586.935 kb on + strand, within MMJJ_RS03105 at 586.955 kb on + strand, within MMJJ_RS03105 at 586.975 kb on + strand at 586.975 kb on + strand at 586.983 kb on - strand at 586.984 kb on + strand at 586.996 kb on - strand at 587.014 kb on - strand at 587.089 kb on - strand at 587.092 kb on - strand at 587.092 kb on - strand at 587.093 kb on + strand at 587.093 kb on + strand at 587.095 kb on - strand at 587.096 kb on + strand at 587.098 kb on - strand at 587.099 kb on + strand at 587.132 kb on - strand at 587.142 kb on + strand at 587.156 kb on - strand at 587.195 kb on - strand at 587.207 kb on - strand at 587.207 kb on - strand at 587.207 kb on - strand at 587.208 kb on + strand at 587.209 kb on - strand at 587.237 kb on + strand at 587.240 kb on - strand at 587.240 kb on - strand at 587.240 kb on - strand at 587.240 kb on - strand at 587.240 kb on - strand at 587.240 kb on - strand at 587.240 kb on - strand at 587.240 kb on - strand at 587.240 kb on - strand at 587.240 kb on - strand at 587.240 kb on - strand at 587.240 kb on - strand at 587.241 kb on + strand at 587.241 kb on + strand at 587.241 kb on + strand at 587.241 kb on + strand at 587.241 kb on + strand at 587.241 kb on + strand at 587.241 kb on + strand at 587.241 kb on + strand at 587.241 kb on + strand at 587.242 kb on - strand at 587.242 kb on - strand at 587.242 kb on - strand at 587.242 kb on - strand at 587.242 kb on - strand at 587.242 kb on - strand at 587.242 kb on - strand at 587.242 kb on - strand at 587.242 kb on - strand at 587.242 kb on - strand at 587.242 kb on - strand at 587.242 kb on - strand at 587.243 kb on + strand at 587.243 kb on + strand at 587.243 kb on + strand at 587.243 kb on + strand at 587.243 kb on + strand at 587.243 kb on + strand at 587.243 kb on + strand at 587.243 kb on + strand at 587.243 kb on + strand at 587.243 kb on + strand at 587.244 kb on - strand at 587.245 kb on + strand at 587.253 kb on - strand at 587.269 kb on - strand at 587.269 kb on - strand at 587.273 kb on - strand at 587.273 kb on - strand at 587.273 kb on - strand at 587.274 kb on + strand at 587.274 kb on + strand at 587.274 kb on + strand at 587.274 kb on + strand at 587.283 kb on - strand at 587.302 kb on + strand at 587.309 kb on - strand at 587.315 kb on - strand at 587.315 kb on - strand at 587.315 kb on - strand at 587.315 kb on - strand at 587.316 kb on + strand at 587.316 kb on + strand at 587.316 kb on + strand at 587.316 kb on + strand at 587.318 kb on - strand at 587.321 kb on - strand at 587.325 kb on - strand at 587.326 kb on + strand at 587.347 kb on + strand at 587.471 kb on + strand at 587.487 kb on + strand, within MMJJ_RS03110 at 587.553 kb on + strand, within MMJJ_RS03110 at 587.737 kb on - strand, within MMJJ_RS03110 at 588.072 kb on + strand, within MMJJ_RS03110 at 588.150 kb on - strand, within MMJJ_RS03110 at 588.151 kb on + strand, within MMJJ_RS03110 at 588.154 kb on - strand, within MMJJ_RS03110 at 588.179 kb on - strand, within MMJJ_RS03110 at 588.405 kb on + strand, within MMJJ_RS03110 at 588.487 kb on - strand at 588.488 kb on + strand, within MMJJ_RS03110 at 588.500 kb on - strand at 588.501 kb on + strand at 588.501 kb on + strand at 588.689 kb on - strand at 588.689 kb on - strand at 588.690 kb on + strand at 588.692 kb on - strand at 588.692 kb on - strand at 588.758 kb on - strand, within MMJJ_RS03115 at 588.765 kb on - strand, within MMJJ_RS03115 at 588.939 kb on - strand, within MMJJ_RS03115 at 588.941 kb on - strand, within MMJJ_RS03115 at 588.944 kb on - strand, within MMJJ_RS03115 at 588.944 kb on - strand, within MMJJ_RS03115 at 588.944 kb on - strand, within MMJJ_RS03115 at 588.945 kb on + strand, within MMJJ_RS03115 at 588.945 kb on + strand at 589.159 kb on - strand at 589.169 kb on - strand at 589.173 kb on + strand at 589.173 kb on + strand at 589.173 kb on + strand at 589.173 kb on + strand at 589.191 kb on - strand at 589.226 kb on - strand at 589.227 kb on + strand at 589.230 kb on - strand at 589.241 kb on - strand at 589.244 kb on - strand at 589.244 kb on - strand at 589.244 kb on - strand at 589.244 kb on - strand at 589.245 kb on + strand at 589.272 kb on + strand at 589.485 kb on + strand at 589.485 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Nitrofurantoin 0.025 mM remove 586,373 + MMJJ_RS03105 0.63 -2.9 586,373 + MMJJ_RS03105 0.63 -0.9 586,373 + MMJJ_RS03105 0.63 +2.7 586,373 + MMJJ_RS03105 0.63 -1.5 586,376 - MMJJ_RS03105 0.63 -2.5 586,376 - MMJJ_RS03105 0.63 -2.6 586,377 + MMJJ_RS03105 0.63 +3.3 586,381 - MMJJ_RS03105 0.63 +0.1 586,381 - MMJJ_RS03105 0.63 -3.0 586,382 + MMJJ_RS03105 0.63 -0.6 586,382 + MMJJ_RS03105 0.63 -0.1 586,406 - MMJJ_RS03105 0.64 +1.1 586,407 + MMJJ_RS03105 0.64 -2.5 586,407 + MMJJ_RS03105 0.64 -0.2 586,410 - MMJJ_RS03105 0.64 +2.1 586,410 - MMJJ_RS03105 0.64 +1.6 586,410 - MMJJ_RS03105 0.64 +0.2 586,410 - MMJJ_RS03105 0.64 -1.4 586,410 - MMJJ_RS03105 0.64 +0.8 586,411 + MMJJ_RS03105 0.64 +0.1 586,411 + MMJJ_RS03105 0.64 -0.6 586,411 + MMJJ_RS03105 0.64 +4.2 586,411 + MMJJ_RS03105 0.64 -1.9 586,411 + MMJJ_RS03105 0.64 +1.0 586,483 - MMJJ_RS03105 0.68 -0.4 586,484 + MMJJ_RS03105 0.68 +0.4 586,485 - MMJJ_RS03105 0.68 -1.2 586,485 - MMJJ_RS03105 0.68 +0.7 586,485 - MMJJ_RS03105 0.68 +0.9 586,486 + MMJJ_RS03105 0.68 +1.2 586,488 + MMJJ_RS03105 0.68 -0.1 586,488 + MMJJ_RS03105 0.68 +0.5 586,488 + MMJJ_RS03105 0.68 +2.4 586,488 + MMJJ_RS03105 0.68 -0.4 586,488 + MMJJ_RS03105 0.68 -3.0 586,488 + MMJJ_RS03105 0.68 -2.1 586,490 - MMJJ_RS03105 0.68 -1.5 586,490 - MMJJ_RS03105 0.68 -0.6 586,490 - MMJJ_RS03105 0.68 +4.0 586,491 + MMJJ_RS03105 0.68 -2.0 586,491 + MMJJ_RS03105 0.68 -1.4 586,491 + MMJJ_RS03105 0.68 +1.0 586,491 + MMJJ_RS03105 0.68 -1.5 586,599 + MMJJ_RS03105 0.73 -0.9 586,600 - MMJJ_RS03105 0.73 +3.6 586,600 - MMJJ_RS03105 0.73 +0.7 586,601 + MMJJ_RS03105 0.73 -2.3 586,601 + MMJJ_RS03105 0.73 +2.6 586,603 - MMJJ_RS03105 0.73 -4.5 586,603 - MMJJ_RS03105 0.73 -2.3 586,624 - MMJJ_RS03105 0.74 -3.1 586,624 - MMJJ_RS03105 0.74 -0.6 586,625 + MMJJ_RS03105 0.74 +0.9 586,651 + MMJJ_RS03105 0.75 +3.2 586,651 + -0.6 586,651 + MMJJ_RS03105 0.75 +1.9 586,674 - MMJJ_RS03105 0.76 +3.7 586,674 - MMJJ_RS03105 0.76 -1.7 586,674 - MMJJ_RS03105 0.76 +2.1 586,674 - MMJJ_RS03105 0.76 +1.4 586,674 - MMJJ_RS03105 0.76 +2.9 586,674 - MMJJ_RS03105 0.76 +3.6 586,675 + MMJJ_RS03105 0.76 -1.7 586,675 + MMJJ_RS03105 0.76 -2.8 586,675 + MMJJ_RS03105 0.76 -3.3 586,675 + MMJJ_RS03105 0.76 -1.4 586,675 + MMJJ_RS03105 0.76 +1.8 586,678 - MMJJ_RS03105 0.76 +4.3 586,678 - MMJJ_RS03105 0.76 +2.3 586,678 - MMJJ_RS03105 0.76 +2.1 586,679 + MMJJ_RS03105 0.77 -2.3 586,720 - MMJJ_RS03105 0.78 +2.2 586,742 - MMJJ_RS03105 0.79 +0.9 586,818 + MMJJ_RS03105 0.83 +1.7 586,818 + MMJJ_RS03105 0.83 +3.7 586,824 + MMJJ_RS03105 0.83 -0.6 586,825 - MMJJ_RS03105 0.83 -0.6 586,825 - MMJJ_RS03105 0.83 -1.1 586,826 + MMJJ_RS03105 0.83 -3.0 586,875 + MMJJ_RS03105 0.85 +1.7 586,891 - MMJJ_RS03105 0.86 -2.0 586,934 - MMJJ_RS03105 0.88 -2.1 586,935 + MMJJ_RS03105 0.88 -0.9 586,935 + MMJJ_RS03105 0.88 -0.3 586,955 + MMJJ_RS03105 0.89 +2.0 586,975 + +1.5 586,975 + +0.6 586,983 - -1.6 586,984 + -4.3 586,996 - +4.8 587,014 - +1.4 587,089 - -1.7 587,092 - +1.0 587,092 - +3.0 587,093 + +3.5 587,093 + -3.3 587,095 - +0.4 587,096 + +2.6 587,098 - -3.2 587,099 + -1.7 587,132 - +0.4 587,142 + +1.4 587,156 - +1.9 587,195 - -4.1 587,207 - -0.3 587,207 - +0.7 587,207 - -2.7 587,208 + +3.0 587,209 - +3.1 587,237 + +2.9 587,240 - +1.9 587,240 - -1.4 587,240 - -0.6 587,240 - +0.9 587,240 - -2.4 587,240 - +3.2 587,240 - +0.1 587,240 - +2.4 587,240 - -1.0 587,240 - -2.1 587,240 - +1.4 587,240 - +2.7 587,241 + -2.6 587,241 + +2.7 587,241 + +2.2 587,241 + +0.4 587,241 + -2.5 587,241 + -1.7 587,241 + -1.2 587,241 + +2.4 587,241 + -1.6 587,242 - -1.4 587,242 - +2.1 587,242 - -2.5 587,242 - +1.6 587,242 - -1.7 587,242 - -3.5 587,242 - +1.6 587,242 - +1.7 587,242 - +2.6 587,242 - -1.6 587,242 - -2.3 587,242 - +1.2 587,243 + +0.4 587,243 + -1.9 587,243 + +0.6 587,243 + +2.9 587,243 + -2.5 587,243 + -3.3 587,243 + +0.1 587,243 + +1.9 587,243 + +2.5 587,243 + -0.2 587,244 - +0.7 587,245 + -1.8 587,253 - +2.8 587,269 - +2.5 587,269 - -2.9 587,273 - +0.4 587,273 - +0.1 587,273 - -1.7 587,274 + -1.3 587,274 + +1.6 587,274 + -1.6 587,274 + +4.7 587,283 - +4.3 587,302 + +0.4 587,309 - +3.3 587,315 - -1.9 587,315 - -3.1 587,315 - +1.4 587,315 - -3.2 587,316 + -0.9 587,316 + -0.1 587,316 + -2.4 587,316 + -2.5 587,318 - -1.3 587,321 - -0.6 587,325 - +0.7 587,326 + +2.1 587,347 + -0.6 587,471 + -1.1 587,487 + MMJJ_RS03110 0.11 -0.9 587,553 + MMJJ_RS03110 0.16 -0.1 587,737 - MMJJ_RS03110 0.31 -1.6 588,072 + MMJJ_RS03110 0.57 +1.1 588,150 - MMJJ_RS03110 0.63 -0.9 588,151 + MMJJ_RS03110 0.63 -1.9 588,154 - MMJJ_RS03110 0.63 -1.4 588,179 - MMJJ_RS03110 0.65 -0.9 588,405 + MMJJ_RS03110 0.83 -0.6 588,487 - +0.4 588,488 + MMJJ_RS03110 0.89 -1.9 588,500 - -1.4 588,501 + +0.4 588,501 + -1.7 588,689 - -2.3 588,689 - -3.8 588,690 + -0.1 588,692 - -2.3 588,692 - -2.7 588,758 - MMJJ_RS03115 0.20 -1.0 588,765 - MMJJ_RS03115 0.21 -3.0 588,939 - MMJJ_RS03115 0.56 -1.0 588,941 - MMJJ_RS03115 0.56 -0.9 588,944 - MMJJ_RS03115 0.57 -2.5 588,944 - MMJJ_RS03115 0.57 -2.4 588,944 - MMJJ_RS03115 0.57 +0.4 588,945 + MMJJ_RS03115 0.57 -1.9 588,945 + -0.6 589,159 - -4.1 589,169 - -0.1 589,173 + -2.8 589,173 + +1.4 589,173 + +0.4 589,173 + -0.6 589,191 - -1.4 589,226 - -1.7 589,227 + -3.1 589,230 - -2.8 589,241 - -0.4 589,244 - -1.1 589,244 - +0.4 589,244 - -1.9 589,244 - -0.9 589,245 + -1.4 589,272 + +0.4 589,485 + +1.4 589,485 + -0.1
Or see this region's nucleotide sequence