Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03080

Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03075 and MMJJ_RS03080 are separated by 141 nucleotidesMMJJ_RS03080 and MMJJ_RS03085 are separated by 29 nucleotidesMMJJ_RS03085 and MMJJ_RS03090 are separated by 207 nucleotides MMJJ_RS03075: MMJJ_RS03075 - sodium-dependent transporter, at 577,042 to 578,553 _RS03075 MMJJ_RS03080: MMJJ_RS03080 - carbohydrate kinase family protein, at 578,695 to 579,603 _RS03080 MMJJ_RS03085: MMJJ_RS03085 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 579,633 to 580,349 _RS03085 MMJJ_RS03090: MMJJ_RS03090 - ECF transporter S component, at 580,557 to 581,153 _RS03090 Position (kb) 578 579 580Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 577.697 kb on + strand, within MMJJ_RS03075at 577.802 kb on + strand, within MMJJ_RS03075at 577.802 kb on + strand, within MMJJ_RS03075at 577.816 kb on + strand, within MMJJ_RS03075at 577.823 kb on - strand, within MMJJ_RS03075at 577.823 kb on - strand, within MMJJ_RS03075at 577.846 kb on + strand, within MMJJ_RS03075at 577.937 kb on - strand, within MMJJ_RS03075at 577.940 kb on - strand, within MMJJ_RS03075at 577.941 kb on + strand, within MMJJ_RS03075at 577.954 kb on + strand, within MMJJ_RS03075at 577.971 kb on - strand, within MMJJ_RS03075at 578.021 kb on + strand, within MMJJ_RS03075at 578.052 kb on - strand, within MMJJ_RS03075at 578.065 kb on - strand, within MMJJ_RS03075at 578.076 kb on + strand, within MMJJ_RS03075at 578.076 kb on + strand, within MMJJ_RS03075at 578.080 kb on - strand, within MMJJ_RS03075at 578.080 kb on - strand, within MMJJ_RS03075at 578.225 kb on - strand, within MMJJ_RS03075at 578.225 kb on - strand, within MMJJ_RS03075at 578.231 kb on + strand, within MMJJ_RS03075at 578.245 kb on + strand, within MMJJ_RS03075at 578.245 kb on + strand, within MMJJ_RS03075at 578.255 kb on - strand, within MMJJ_RS03075at 578.258 kb on - strand, within MMJJ_RS03075at 578.265 kb on - strand, within MMJJ_RS03075at 578.269 kb on - strand, within MMJJ_RS03075at 578.285 kb on + strand, within MMJJ_RS03075at 578.285 kb on + strand, within MMJJ_RS03075at 578.408 kb on + strandat 578.462 kb on - strandat 578.477 kb on + strandat 578.479 kb on + strandat 578.600 kb on - strandat 578.607 kb on - strandat 578.607 kb on - strandat 578.608 kb on + strandat 578.609 kb on - strandat 578.610 kb on + strandat 578.611 kb on - strandat 578.612 kb on + strandat 578.666 kb on - strandat 578.666 kb on - strandat 578.666 kb on - strandat 578.667 kb on + strandat 578.667 kb on + strandat 578.674 kb on + strandat 578.697 kb on + strandat 578.698 kb on - strandat 578.699 kb on + strandat 578.716 kb on + strandat 578.774 kb on + strandat 578.774 kb on + strandat 578.788 kb on - strand, within MMJJ_RS03080at 578.788 kb on - strand, within MMJJ_RS03080at 578.789 kb on + strand, within MMJJ_RS03080at 578.789 kb on + strand, within MMJJ_RS03080at 578.833 kb on - strand, within MMJJ_RS03080at 578.837 kb on - strand, within MMJJ_RS03080at 578.837 kb on - strand, within MMJJ_RS03080at 578.902 kb on - strand, within MMJJ_RS03080at 578.916 kb on - strand, within MMJJ_RS03080at 578.917 kb on + strand, within MMJJ_RS03080at 578.917 kb on + strand, within MMJJ_RS03080at 578.936 kb on - strand, within MMJJ_RS03080at 578.938 kb on - strand, within MMJJ_RS03080at 578.938 kb on - strand, within MMJJ_RS03080at 578.938 kb on - strand, within MMJJ_RS03080at 578.938 kb on - strand, within MMJJ_RS03080at 578.939 kb on + strand, within MMJJ_RS03080at 578.939 kb on + strand, within MMJJ_RS03080at 578.966 kb on + strand, within MMJJ_RS03080at 578.971 kb on - strand, within MMJJ_RS03080at 578.989 kb on + strand, within MMJJ_RS03080at 579.096 kb on - strand, within MMJJ_RS03080at 579.101 kb on - strand, within MMJJ_RS03080at 579.101 kb on - strand, within MMJJ_RS03080at 579.102 kb on + strand, within MMJJ_RS03080at 579.102 kb on + strand, within MMJJ_RS03080at 579.103 kb on - strand, within MMJJ_RS03080at 579.109 kb on - strand, within MMJJ_RS03080at 579.110 kb on + strand, within MMJJ_RS03080at 579.205 kb on - strand, within MMJJ_RS03080at 579.424 kb on - strand, within MMJJ_RS03080at 579.424 kb on - strand, within MMJJ_RS03080at 579.468 kb on - strand, within MMJJ_RS03080at 579.550 kb on - strandat 579.550 kb on - strandat 579.552 kb on - strandat 579.552 kb on - strandat 579.552 kb on - strandat 579.553 kb on + strandat 579.553 kb on + strandat 579.554 kb on - strandat 579.554 kb on - strandat 579.554 kb on - strandat 579.555 kb on + strandat 579.555 kb on + strandat 579.555 kb on + strandat 579.619 kb on - strandat 579.634 kb on - strandat 580.402 kb on - strandat 580.434 kb on - strandat 580.435 kb on + strandat 580.436 kb on - strandat 580.436 kb on - strandat 580.437 kb on + strandat 580.437 kb on + strandat 580.437 kb on + strandat 580.437 kb on + strandat 580.437 kb on + strandat 580.437 kb on + strandat 580.437 kb on + strandat 580.442 kb on - strandat 580.442 kb on - strandat 580.442 kb on - strandat 580.446 kb on - strandat 580.482 kb on + strandat 580.489 kb on - strandat 580.510 kb on + strandat 580.541 kb on - strandat 580.559 kb on + strandat 580.588 kb on + strandat 580.588 kb on + strandat 580.588 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Nitrofurantoin 0.025 mM
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577,697 + MMJJ_RS03075 0.43 +5.3
577,802 + MMJJ_RS03075 0.50 -0.4
577,802 + MMJJ_RS03075 0.50 +0.7
577,816 + MMJJ_RS03075 0.51 +4.1
577,823 - MMJJ_RS03075 0.52 +0.4
577,823 - MMJJ_RS03075 0.52 -0.4
577,846 + MMJJ_RS03075 0.53 +2.2
577,937 - MMJJ_RS03075 0.59 +1.6
577,940 - MMJJ_RS03075 0.59 -2.1
577,941 + MMJJ_RS03075 0.59 -2.6
577,954 + MMJJ_RS03075 0.60 -0.4
577,971 - MMJJ_RS03075 0.61 +0.7
578,021 + MMJJ_RS03075 0.65 -2.1
578,052 - MMJJ_RS03075 0.67 +2.6
578,065 - MMJJ_RS03075 0.68 +0.6
578,076 + MMJJ_RS03075 0.68 +1.7
578,076 + MMJJ_RS03075 0.68 -3.1
578,080 - MMJJ_RS03075 0.69 -0.9
578,080 - MMJJ_RS03075 0.69 +1.2
578,225 - MMJJ_RS03075 0.78 +1.6
578,225 - MMJJ_RS03075 0.78 -2.3
578,231 + MMJJ_RS03075 0.79 -3.7
578,245 + MMJJ_RS03075 0.80 +1.4
578,245 + MMJJ_RS03075 0.80 -1.9
578,255 - MMJJ_RS03075 0.80 -2.6
578,258 - MMJJ_RS03075 0.80 -1.4
578,265 - MMJJ_RS03075 0.81 -1.7
578,269 - MMJJ_RS03075 0.81 +2.6
578,285 + MMJJ_RS03075 0.82 -0.6
578,285 + MMJJ_RS03075 0.82 +1.7
578,408 + -2.9
578,462 - -0.1
578,477 + -2.5
578,479 + +1.2
578,600 - +0.9
578,607 - +0.6
578,607 - -3.7
578,608 + +1.1
578,609 - -3.5
578,610 + -2.1
578,611 - +0.4
578,612 + +0.6
578,666 - -2.5
578,666 - -2.7
578,666 - +4.4
578,667 + +3.2
578,667 + +1.6
578,674 + +0.6
578,697 + +0.7
578,698 - -0.3
578,699 + -0.1
578,716 + -0.6
578,774 + -0.0
578,774 + -3.8
578,788 - MMJJ_RS03080 0.10 +1.1
578,788 - MMJJ_RS03080 0.10 +2.0
578,789 + MMJJ_RS03080 0.10 -1.1
578,789 + MMJJ_RS03080 0.10 -2.6
578,833 - MMJJ_RS03080 0.15 -1.6
578,837 - MMJJ_RS03080 0.16 +0.8
578,837 - MMJJ_RS03080 0.16 -0.8
578,902 - MMJJ_RS03080 0.23 -3.8
578,916 - MMJJ_RS03080 0.24 -0.1
578,917 + MMJJ_RS03080 0.24 -0.1
578,917 + MMJJ_RS03080 0.24 -2.6
578,936 - MMJJ_RS03080 0.27 +1.4
578,938 - MMJJ_RS03080 0.27 -0.2
578,938 - MMJJ_RS03080 0.27 -0.9
578,938 - MMJJ_RS03080 0.27 -0.6
578,938 - MMJJ_RS03080 0.27 -2.6
578,939 + MMJJ_RS03080 0.27 -2.3
578,939 + MMJJ_RS03080 0.27 -2.5
578,966 + MMJJ_RS03080 0.30 -2.0
578,971 - MMJJ_RS03080 0.30 +1.4
578,989 + MMJJ_RS03080 0.32 -2.1
579,096 - MMJJ_RS03080 0.44 -2.7
579,101 - MMJJ_RS03080 0.45 -2.0
579,101 - MMJJ_RS03080 0.45 -2.9
579,102 + MMJJ_RS03080 0.45 -3.3
579,102 + MMJJ_RS03080 0.45 +0.6
579,103 - MMJJ_RS03080 0.45 -2.5
579,109 - MMJJ_RS03080 0.46 -3.6
579,110 + MMJJ_RS03080 0.46 -2.6
579,205 - MMJJ_RS03080 0.56 -1.2
579,424 - MMJJ_RS03080 0.80 -1.6
579,424 - MMJJ_RS03080 0.80 -1.4
579,468 - MMJJ_RS03080 0.85 +0.4
579,550 - -3.1
579,550 - +1.7
579,552 - -0.1
579,552 - -1.1
579,552 - -4.5
579,553 + -4.2
579,553 + -3.6
579,554 - -4.1
579,554 - -2.0
579,554 - -2.1
579,555 + -0.6
579,555 + -1.7
579,555 + +1.0
579,619 - +1.5
579,634 - -2.6
580,402 - +1.4
580,434 - +1.4
580,435 + -0.6
580,436 - -0.6
580,436 - -3.0
580,437 + -3.8
580,437 + -3.6
580,437 + -3.1
580,437 + -3.5
580,437 + -0.1
580,437 + -2.4
580,437 + +0.6
580,442 - -2.1
580,442 - -0.6
580,442 - +1.0
580,446 - +0.1
580,482 + +2.3
580,489 - -1.3
580,510 + -2.7
580,541 - +2.3
580,559 + +2.2
580,588 + -0.1
580,588 + +0.8
580,588 + -0.8

Or see this region's nucleotide sequence