Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03055 and MMJJ_RS03060 are separated by 31 nucleotides MMJJ_RS03060 and MMJJ_RS03065 are separated by 17 nucleotides MMJJ_RS03065 and MMJJ_RS03070 are separated by 194 nucleotides MMJJ_RS03070 and MMJJ_RS03075 are separated by 12 nucleotides
MMJJ_RS03055: MMJJ_RS03055 - hypothetical protein, at 574,352 to 574,804
_RS03055
MMJJ_RS03060: MMJJ_RS03060 - methanogenesis marker 7 protein, at 574,836 to 575,750
_RS03060
MMJJ_RS03065: MMJJ_RS03065 - CBS domain-containing protein, at 575,768 to 576,733
_RS03065
MMJJ_RS03070: MMJJ_RS03070 - MetS family NSS transporter small subunit, at 576,928 to 577,029
_RS03070
MMJJ_RS03075: MMJJ_RS03075 - sodium-dependent transporter, at 577,042 to 578,553
_RS03075
Position (kb) 575
576
577 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 574.837 kb on - strand at 574.917 kb on + strand at 574.921 kb on - strand at 574.921 kb on - strand at 574.921 kb on - strand at 574.922 kb on + strand at 574.922 kb on + strand at 574.942 kb on - strand, within MMJJ_RS03060 at 574.943 kb on + strand, within MMJJ_RS03060 at 574.983 kb on + strand, within MMJJ_RS03060 at 575.236 kb on - strand, within MMJJ_RS03060 at 575.236 kb on - strand at 575.468 kb on + strand, within MMJJ_RS03060 at 575.560 kb on + strand, within MMJJ_RS03060 at 575.636 kb on + strand, within MMJJ_RS03060 at 575.891 kb on - strand, within MMJJ_RS03065 at 575.894 kb on - strand, within MMJJ_RS03065 at 575.894 kb on - strand, within MMJJ_RS03065 at 575.921 kb on - strand, within MMJJ_RS03065 at 575.941 kb on - strand, within MMJJ_RS03065 at 575.944 kb on - strand, within MMJJ_RS03065 at 575.948 kb on - strand, within MMJJ_RS03065 at 575.965 kb on - strand, within MMJJ_RS03065 at 575.965 kb on - strand, within MMJJ_RS03065 at 575.966 kb on + strand, within MMJJ_RS03065 at 575.978 kb on - strand, within MMJJ_RS03065 at 575.979 kb on + strand, within MMJJ_RS03065 at 576.014 kb on - strand, within MMJJ_RS03065 at 576.014 kb on - strand, within MMJJ_RS03065 at 576.108 kb on + strand, within MMJJ_RS03065 at 576.108 kb on + strand, within MMJJ_RS03065 at 576.157 kb on + strand, within MMJJ_RS03065 at 576.160 kb on - strand, within MMJJ_RS03065 at 576.167 kb on + strand, within MMJJ_RS03065 at 576.167 kb on + strand, within MMJJ_RS03065 at 576.186 kb on + strand, within MMJJ_RS03065 at 576.221 kb on + strand, within MMJJ_RS03065 at 576.221 kb on - strand, within MMJJ_RS03065 at 576.222 kb on + strand, within MMJJ_RS03065 at 576.368 kb on - strand, within MMJJ_RS03065 at 576.368 kb on - strand, within MMJJ_RS03065 at 576.368 kb on - strand, within MMJJ_RS03065 at 576.369 kb on + strand, within MMJJ_RS03065 at 576.369 kb on + strand, within MMJJ_RS03065 at 576.369 kb on + strand, within MMJJ_RS03065 at 576.369 kb on + strand, within MMJJ_RS03065 at 576.397 kb on - strand, within MMJJ_RS03065 at 576.397 kb on - strand, within MMJJ_RS03065 at 576.422 kb on - strand, within MMJJ_RS03065 at 576.437 kb on + strand, within MMJJ_RS03065 at 576.437 kb on + strand, within MMJJ_RS03065 at 576.437 kb on + strand, within MMJJ_RS03065 at 576.466 kb on - strand, within MMJJ_RS03065 at 576.470 kb on - strand, within MMJJ_RS03065 at 576.500 kb on - strand, within MMJJ_RS03065 at 576.500 kb on - strand, within MMJJ_RS03065 at 576.503 kb on + strand, within MMJJ_RS03065 at 576.503 kb on + strand, within MMJJ_RS03065 at 576.563 kb on - strand, within MMJJ_RS03065 at 576.563 kb on - strand, within MMJJ_RS03065 at 576.564 kb on + strand, within MMJJ_RS03065 at 576.564 kb on + strand, within MMJJ_RS03065 at 576.564 kb on + strand, within MMJJ_RS03065 at 576.573 kb on + strand, within MMJJ_RS03065 at 576.596 kb on - strand, within MMJJ_RS03065 at 576.644 kb on + strand at 576.644 kb on + strand at 576.648 kb on + strand at 576.648 kb on + strand at 576.648 kb on + strand at 576.651 kb on - strand at 576.652 kb on + strand at 576.655 kb on - strand at 576.656 kb on + strand at 576.659 kb on - strand at 576.663 kb on - strand at 576.663 kb on - strand at 576.663 kb on - strand at 576.664 kb on + strand at 576.664 kb on + strand at 576.664 kb on + strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.695 kb on + strand at 576.695 kb on + strand at 576.695 kb on + strand at 576.695 kb on + strand at 576.695 kb on + strand at 576.696 kb on - strand at 576.696 kb on - strand at 576.696 kb on - strand at 576.696 kb on - strand at 576.696 kb on - strand at 576.696 kb on - strand at 576.697 kb on + strand at 576.697 kb on + strand at 576.697 kb on + strand at 576.697 kb on + strand at 576.698 kb on - strand at 576.708 kb on + strand at 576.724 kb on - strand at 576.724 kb on - strand at 576.725 kb on + strand at 576.728 kb on - strand at 576.734 kb on - strand at 576.775 kb on - strand at 576.778 kb on - strand at 576.785 kb on - strand at 576.785 kb on - strand at 576.785 kb on - strand at 576.785 kb on - strand at 576.785 kb on - strand at 576.785 kb on - strand at 576.785 kb on - strand at 576.786 kb on + strand at 576.786 kb on + strand at 576.786 kb on + strand at 576.786 kb on + strand at 576.787 kb on - strand at 576.787 kb on - strand at 576.788 kb on + strand at 576.788 kb on + strand at 576.790 kb on - strand at 576.790 kb on - strand at 576.790 kb on - strand at 576.792 kb on - strand at 576.793 kb on + strand at 576.793 kb on + strand at 576.799 kb on - strand at 576.799 kb on - strand at 576.838 kb on - strand at 576.859 kb on + strand at 576.880 kb on + strand at 576.880 kb on + strand at 576.890 kb on - strand at 576.929 kb on - strand at 576.930 kb on + strand at 576.965 kb on - strand, within MMJJ_RS03070 at 576.965 kb on - strand, within MMJJ_RS03070 at 577.000 kb on - strand, within MMJJ_RS03070 at 577.001 kb on + strand, within MMJJ_RS03070 at 577.009 kb on - strand, within MMJJ_RS03070 at 577.010 kb on + strand, within MMJJ_RS03070 at 577.032 kb on - strand at 577.035 kb on - strand at 577.036 kb on + strand at 577.036 kb on + strand at 577.043 kb on - strand at 577.119 kb on - strand at 577.124 kb on + strand at 577.144 kb on - strand at 577.144 kb on - strand at 577.204 kb on - strand, within MMJJ_RS03075 at 577.229 kb on + strand, within MMJJ_RS03075 at 577.235 kb on - strand, within MMJJ_RS03075 at 577.236 kb on + strand, within MMJJ_RS03075 at 577.236 kb on + strand, within MMJJ_RS03075 at 577.236 kb on + strand, within MMJJ_RS03075 at 577.296 kb on + strand, within MMJJ_RS03075 at 577.370 kb on + strand, within MMJJ_RS03075 at 577.403 kb on - strand, within MMJJ_RS03075 at 577.404 kb on + strand, within MMJJ_RS03075 at 577.411 kb on - strand, within MMJJ_RS03075 at 577.412 kb on + strand, within MMJJ_RS03075 at 577.427 kb on - strand, within MMJJ_RS03075 at 577.448 kb on - strand, within MMJJ_RS03075 at 577.448 kb on - strand, within MMJJ_RS03075 at 577.480 kb on + strand, within MMJJ_RS03075 at 577.583 kb on + strand, within MMJJ_RS03075 at 577.583 kb on + strand, within MMJJ_RS03075 at 577.598 kb on + strand, within MMJJ_RS03075 at 577.598 kb on + strand, within MMJJ_RS03075 at 577.598 kb on + strand, within MMJJ_RS03075 at 577.610 kb on + strand, within MMJJ_RS03075 at 577.692 kb on - strand, within MMJJ_RS03075 at 577.697 kb on + strand, within MMJJ_RS03075
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Nitrofurantoin 0.025 mM remove 574,837 - +2.3 574,917 + +0.4 574,921 - +1.4 574,921 - -0.9 574,921 - +1.4 574,922 + +0.4 574,922 + +0.8 574,942 - MMJJ_RS03060 0.12 +1.4 574,943 + MMJJ_RS03060 0.12 -0.1 574,983 + MMJJ_RS03060 0.16 -2.3 575,236 - MMJJ_RS03060 0.44 -0.6 575,236 - +1.4 575,468 + MMJJ_RS03060 0.69 -0.1 575,560 + MMJJ_RS03060 0.79 -0.1 575,636 + MMJJ_RS03060 0.87 -0.1 575,891 - MMJJ_RS03065 0.13 -3.3 575,894 - MMJJ_RS03065 0.13 -1.9 575,894 - MMJJ_RS03065 0.13 -2.6 575,921 - MMJJ_RS03065 0.16 -1.1 575,941 - MMJJ_RS03065 0.18 -2.4 575,944 - MMJJ_RS03065 0.18 -3.6 575,948 - MMJJ_RS03065 0.19 -0.3 575,965 - MMJJ_RS03065 0.20 -2.6 575,965 - MMJJ_RS03065 0.20 -2.7 575,966 + MMJJ_RS03065 0.20 -1.4 575,978 - MMJJ_RS03065 0.22 +2.6 575,979 + MMJJ_RS03065 0.22 -3.9 576,014 - MMJJ_RS03065 0.25 -3.0 576,014 - MMJJ_RS03065 0.25 -0.8 576,108 + MMJJ_RS03065 0.35 -3.0 576,108 + MMJJ_RS03065 0.35 +0.8 576,157 + MMJJ_RS03065 0.40 +0.0 576,160 - MMJJ_RS03065 0.41 -1.3 576,167 + MMJJ_RS03065 0.41 -3.6 576,167 + MMJJ_RS03065 0.41 -2.1 576,186 + MMJJ_RS03065 0.43 -1.7 576,221 + MMJJ_RS03065 0.47 -2.6 576,221 - MMJJ_RS03065 0.47 -1.3 576,222 + MMJJ_RS03065 0.47 -0.1 576,368 - MMJJ_RS03065 0.62 -3.3 576,368 - MMJJ_RS03065 0.62 -0.9 576,368 - MMJJ_RS03065 0.62 -2.3 576,369 + MMJJ_RS03065 0.62 -2.5 576,369 + MMJJ_RS03065 0.62 -2.1 576,369 + MMJJ_RS03065 0.62 -1.8 576,369 + MMJJ_RS03065 0.62 -2.6 576,397 - MMJJ_RS03065 0.65 -3.4 576,397 - MMJJ_RS03065 0.65 -0.6 576,422 - MMJJ_RS03065 0.68 -0.1 576,437 + MMJJ_RS03065 0.69 -1.6 576,437 + MMJJ_RS03065 0.69 -1.1 576,437 + MMJJ_RS03065 0.69 -0.9 576,466 - MMJJ_RS03065 0.72 -1.6 576,470 - MMJJ_RS03065 0.73 -0.7 576,500 - MMJJ_RS03065 0.76 -2.3 576,500 - MMJJ_RS03065 0.76 -3.1 576,503 + MMJJ_RS03065 0.76 +0.4 576,503 + MMJJ_RS03065 0.76 -2.8 576,563 - MMJJ_RS03065 0.82 -0.6 576,563 - MMJJ_RS03065 0.82 -1.6 576,564 + MMJJ_RS03065 0.82 -2.0 576,564 + MMJJ_RS03065 0.82 -3.5 576,564 + MMJJ_RS03065 0.82 -2.5 576,573 + MMJJ_RS03065 0.83 -1.8 576,596 - MMJJ_RS03065 0.86 -1.1 576,644 + +0.4 576,644 + -2.6 576,648 + -0.6 576,648 + -1.7 576,648 + -3.1 576,651 - -2.4 576,652 + -1.9 576,655 - -0.9 576,656 + -3.4 576,659 - -0.9 576,663 - -0.9 576,663 - -1.6 576,663 - +1.1 576,664 + -2.6 576,664 + +0.2 576,664 + -1.5 576,694 - -1.6 576,694 - -2.3 576,694 - -1.7 576,694 - -3.0 576,694 - -3.0 576,694 - -0.9 576,694 - +1.4 576,694 - -1.9 576,694 - -3.1 576,695 + -3.0 576,695 + -0.9 576,695 + -2.6 576,695 + -2.6 576,695 + -1.7 576,696 - -2.0 576,696 - -3.1 576,696 - -4.0 576,696 - -2.0 576,696 - +1.6 576,696 - -2.7 576,697 + -1.5 576,697 + +0.6 576,697 + +0.3 576,697 + -2.1 576,698 - -1.4 576,708 + -0.1 576,724 - -0.6 576,724 - +0.6 576,725 + -1.4 576,728 - +0.0 576,734 - +0.5 576,775 - -0.1 576,778 - -1.7 576,785 - -2.4 576,785 - +0.6 576,785 - -1.2 576,785 - -0.3 576,785 - -1.6 576,785 - -1.9 576,785 - -0.3 576,786 + -1.1 576,786 + -2.4 576,786 + -2.0 576,786 + -1.1 576,787 - -0.6 576,787 - +0.3 576,788 + -2.0 576,788 + -3.1 576,790 - -1.9 576,790 - +2.2 576,790 - +1.3 576,792 - -3.1 576,793 + -0.4 576,793 + -2.7 576,799 - -1.7 576,799 - +2.7 576,838 - -3.2 576,859 + +2.2 576,880 + -2.1 576,880 + +0.6 576,890 - +0.2 576,929 - +1.0 576,930 + -0.4 576,965 - MMJJ_RS03070 0.36 +0.6 576,965 - MMJJ_RS03070 0.36 +0.5 577,000 - MMJJ_RS03070 0.71 -0.9 577,001 + MMJJ_RS03070 0.72 -1.4 577,009 - MMJJ_RS03070 0.79 -1.6 577,010 + MMJJ_RS03070 0.80 -1.8 577,032 - +0.5 577,035 - -1.5 577,036 + +0.7 577,036 + +0.1 577,043 - +3.4 577,119 - -2.0 577,124 + -3.1 577,144 - +3.8 577,144 - -3.2 577,204 - MMJJ_RS03075 0.11 +1.3 577,229 + MMJJ_RS03075 0.12 +2.4 577,235 - MMJJ_RS03075 0.13 +1.2 577,236 + MMJJ_RS03075 0.13 -2.3 577,236 + MMJJ_RS03075 0.13 -1.9 577,236 + MMJJ_RS03075 0.13 +0.1 577,296 + MMJJ_RS03075 0.17 +1.7 577,370 + MMJJ_RS03075 0.22 +4.0 577,403 - MMJJ_RS03075 0.24 +0.1 577,404 + MMJJ_RS03075 0.24 +2.5 577,411 - MMJJ_RS03075 0.24 +2.6 577,412 + MMJJ_RS03075 0.24 -1.7 577,427 - MMJJ_RS03075 0.25 -2.5 577,448 - MMJJ_RS03075 0.27 -1.7 577,448 - MMJJ_RS03075 0.27 -0.6 577,480 + MMJJ_RS03075 0.29 +0.4 577,583 + MMJJ_RS03075 0.36 -2.8 577,583 + MMJJ_RS03075 0.36 -0.9 577,598 + MMJJ_RS03075 0.37 +1.4 577,598 + MMJJ_RS03075 0.37 +0.4 577,598 + MMJJ_RS03075 0.37 +0.6 577,610 + MMJJ_RS03075 0.38 +2.6 577,692 - MMJJ_RS03075 0.43 -2.6 577,697 + MMJJ_RS03075 0.43 +5.3
Or see this region's nucleotide sequence