Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02875 and MMJJ_RS02880 are separated by 42 nucleotides MMJJ_RS02880 and MMJJ_RS02885 are separated by 178 nucleotides MMJJ_RS02885 and MMJJ_RS02890 are separated by 9 nucleotides MMJJ_RS02890 and MMJJ_RS02895 overlap by 4 nucleotides MMJJ_RS02895 and MMJJ_RS02900 are separated by 156 nucleotides
MMJJ_RS02875: MMJJ_RS02875 - site-2 protease family protein, at 541,995 to 543,008
_RS02875
MMJJ_RS02880: MMJJ_RS02880 - hypothetical protein, at 543,051 to 543,323
_RS02880
MMJJ_RS02885: MMJJ_RS02885 - NifB/NifX family molybdenum-iron cluster-binding protein, at 543,502 to 543,861
_RS02885
MMJJ_RS02890: MMJJ_RS02890 - ATP-binding protein, at 543,871 to 544,728
_RS02890
MMJJ_RS02895: MMJJ_RS02895 - ATP-binding protein, at 544,725 to 545,570
_RS02895
MMJJ_RS02900: MMJJ_RS02900 - hypothetical protein, at 545,727 to 546,011
_RS02900
Position (kb) 543
544
545 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 542.876 kb on + strand, within MMJJ_RS02875 at 542.885 kb on + strand, within MMJJ_RS02875 at 542.904 kb on + strand, within MMJJ_RS02875 at 542.921 kb on + strand at 542.948 kb on + strand at 542.963 kb on - strand at 542.963 kb on - strand at 542.968 kb on - strand at 542.968 kb on - strand at 542.968 kb on - strand at 542.992 kb on - strand at 543.025 kb on + strand at 543.029 kb on - strand at 543.029 kb on - strand at 543.030 kb on + strand at 543.091 kb on - strand, within MMJJ_RS02880 at 543.091 kb on - strand, within MMJJ_RS02880 at 543.096 kb on + strand, within MMJJ_RS02880 at 543.116 kb on - strand, within MMJJ_RS02880 at 543.116 kb on - strand, within MMJJ_RS02880 at 543.121 kb on - strand, within MMJJ_RS02880 at 543.121 kb on - strand, within MMJJ_RS02880 at 543.124 kb on - strand, within MMJJ_RS02880 at 543.132 kb on - strand, within MMJJ_RS02880 at 543.132 kb on - strand, within MMJJ_RS02880 at 543.161 kb on - strand, within MMJJ_RS02880 at 543.161 kb on - strand, within MMJJ_RS02880 at 543.162 kb on + strand, within MMJJ_RS02880 at 543.162 kb on + strand, within MMJJ_RS02880 at 543.169 kb on - strand, within MMJJ_RS02880 at 543.170 kb on + strand, within MMJJ_RS02880 at 543.172 kb on - strand, within MMJJ_RS02880 at 543.197 kb on + strand, within MMJJ_RS02880 at 543.199 kb on - strand, within MMJJ_RS02880 at 543.212 kb on + strand, within MMJJ_RS02880 at 543.212 kb on + strand, within MMJJ_RS02880 at 543.242 kb on - strand, within MMJJ_RS02880 at 543.242 kb on - strand, within MMJJ_RS02880 at 543.250 kb on + strand, within MMJJ_RS02880 at 543.256 kb on - strand, within MMJJ_RS02880 at 543.256 kb on - strand, within MMJJ_RS02880 at 543.259 kb on - strand, within MMJJ_RS02880 at 543.259 kb on - strand, within MMJJ_RS02880 at 543.260 kb on + strand, within MMJJ_RS02880 at 543.266 kb on + strand, within MMJJ_RS02880 at 543.266 kb on + strand, within MMJJ_RS02880 at 543.299 kb on - strand at 543.305 kb on + strand at 543.311 kb on + strand at 543.311 kb on + strand at 543.325 kb on - strand at 543.363 kb on - strand at 543.366 kb on + strand at 543.373 kb on - strand at 543.403 kb on + strand at 543.409 kb on + strand at 543.449 kb on + strand at 543.462 kb on - strand at 543.462 kb on - strand at 543.531 kb on - strand at 543.532 kb on + strand at 543.582 kb on + strand, within MMJJ_RS02885 at 543.625 kb on + strand, within MMJJ_RS02885 at 543.655 kb on + strand, within MMJJ_RS02885 at 543.695 kb on - strand, within MMJJ_RS02885 at 543.695 kb on - strand, within MMJJ_RS02885 at 543.696 kb on + strand, within MMJJ_RS02885 at 543.750 kb on - strand, within MMJJ_RS02885 at 543.753 kb on - strand, within MMJJ_RS02885 at 543.760 kb on - strand, within MMJJ_RS02885 at 543.855 kb on - strand at 543.855 kb on - strand at 543.855 kb on - strand at 543.856 kb on + strand at 543.856 kb on + strand at 543.856 kb on + strand at 543.920 kb on - strand at 544.077 kb on + strand, within MMJJ_RS02890 at 544.080 kb on - strand, within MMJJ_RS02890 at 544.101 kb on - strand, within MMJJ_RS02890 at 544.106 kb on - strand, within MMJJ_RS02890 at 544.107 kb on + strand, within MMJJ_RS02890 at 544.107 kb on + strand, within MMJJ_RS02890 at 544.111 kb on + strand, within MMJJ_RS02890 at 544.111 kb on + strand, within MMJJ_RS02890 at 544.122 kb on - strand, within MMJJ_RS02890 at 544.241 kb on - strand, within MMJJ_RS02890 at 544.300 kb on + strand, within MMJJ_RS02890 at 544.300 kb on + strand, within MMJJ_RS02890 at 544.357 kb on + strand, within MMJJ_RS02890 at 544.364 kb on - strand, within MMJJ_RS02890 at 544.365 kb on + strand, within MMJJ_RS02890 at 544.368 kb on - strand, within MMJJ_RS02890 at 544.369 kb on + strand, within MMJJ_RS02890 at 544.371 kb on + strand, within MMJJ_RS02890 at 544.398 kb on - strand, within MMJJ_RS02890 at 544.398 kb on - strand, within MMJJ_RS02890 at 544.398 kb on - strand, within MMJJ_RS02890 at 544.399 kb on + strand, within MMJJ_RS02890 at 544.399 kb on + strand, within MMJJ_RS02890 at 544.399 kb on + strand, within MMJJ_RS02890 at 544.403 kb on - strand, within MMJJ_RS02890 at 544.404 kb on + strand, within MMJJ_RS02890 at 544.429 kb on - strand, within MMJJ_RS02890 at 544.502 kb on + strand, within MMJJ_RS02890 at 544.502 kb on + strand, within MMJJ_RS02890 at 544.505 kb on - strand, within MMJJ_RS02890 at 544.510 kb on + strand, within MMJJ_RS02890 at 544.533 kb on - strand, within MMJJ_RS02890 at 544.534 kb on + strand, within MMJJ_RS02890 at 544.620 kb on - strand, within MMJJ_RS02890 at 544.620 kb on - strand, within MMJJ_RS02890 at 544.621 kb on + strand, within MMJJ_RS02890 at 544.630 kb on + strand, within MMJJ_RS02890 at 544.692 kb on - strand at 544.722 kb on + strand at 544.725 kb on + strand at 544.745 kb on + strand at 544.805 kb on - strand at 544.846 kb on - strand, within MMJJ_RS02895 at 544.853 kb on + strand, within MMJJ_RS02895 at 544.853 kb on + strand, within MMJJ_RS02895 at 544.881 kb on + strand, within MMJJ_RS02895 at 544.887 kb on - strand, within MMJJ_RS02895 at 544.888 kb on + strand, within MMJJ_RS02895 at 544.890 kb on + strand, within MMJJ_RS02895 at 544.890 kb on + strand, within MMJJ_RS02895 at 544.931 kb on - strand, within MMJJ_RS02895 at 544.932 kb on + strand, within MMJJ_RS02895 at 544.956 kb on + strand, within MMJJ_RS02895 at 544.988 kb on + strand, within MMJJ_RS02895 at 545.107 kb on - strand, within MMJJ_RS02895 at 545.156 kb on + strand, within MMJJ_RS02895 at 545.207 kb on + strand, within MMJJ_RS02895 at 545.227 kb on - strand, within MMJJ_RS02895 at 545.227 kb on - strand, within MMJJ_RS02895 at 545.239 kb on - strand, within MMJJ_RS02895 at 545.240 kb on + strand, within MMJJ_RS02895 at 545.252 kb on - strand, within MMJJ_RS02895 at 545.273 kb on + strand, within MMJJ_RS02895 at 545.291 kb on - strand, within MMJJ_RS02895 at 545.291 kb on - strand, within MMJJ_RS02895 at 545.291 kb on - strand, within MMJJ_RS02895 at 545.292 kb on + strand, within MMJJ_RS02895 at 545.356 kb on + strand, within MMJJ_RS02895 at 545.357 kb on - strand, within MMJJ_RS02895 at 545.358 kb on + strand, within MMJJ_RS02895 at 545.358 kb on + strand, within MMJJ_RS02895 at 545.359 kb on - strand at 545.359 kb on - strand, within MMJJ_RS02895 at 545.359 kb on - strand, within MMJJ_RS02895 at 545.359 kb on - strand, within MMJJ_RS02895 at 545.359 kb on - strand, within MMJJ_RS02895 at 545.360 kb on + strand, within MMJJ_RS02895 at 545.363 kb on + strand, within MMJJ_RS02895 at 545.370 kb on + strand, within MMJJ_RS02895 at 545.381 kb on - strand, within MMJJ_RS02895 at 545.438 kb on + strand, within MMJJ_RS02895 at 545.460 kb on + strand, within MMJJ_RS02895 at 545.462 kb on - strand, within MMJJ_RS02895 at 545.468 kb on + strand, within MMJJ_RS02895 at 545.471 kb on - strand, within MMJJ_RS02895 at 545.472 kb on + strand, within MMJJ_RS02895 at 545.472 kb on + strand, within MMJJ_RS02895 at 545.501 kb on + strand at 545.531 kb on - strand at 545.568 kb on - strand at 545.588 kb on - strand at 545.640 kb on + strand at 545.641 kb on - strand at 545.644 kb on + strand at 545.691 kb on - strand at 545.697 kb on + strand at 545.702 kb on - strand at 545.702 kb on - strand at 545.702 kb on - strand at 545.702 kb on - strand at 545.702 kb on - strand at 545.702 kb on - strand at 545.703 kb on + strand at 545.703 kb on + strand at 545.703 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Nitrofurantoin 0.025 mM remove 542,876 + MMJJ_RS02875 0.87 -3.8 542,885 + MMJJ_RS02875 0.88 -1.8 542,904 + MMJJ_RS02875 0.90 +5.5 542,921 + +2.2 542,948 + +5.5 542,963 - +2.6 542,963 - -1.6 542,968 - +2.7 542,968 - -0.1 542,968 - -1.4 542,992 - +0.3 543,025 + +3.0 543,029 - +1.6 543,029 - -0.7 543,030 + -1.9 543,091 - MMJJ_RS02880 0.15 +2.1 543,091 - MMJJ_RS02880 0.15 +1.3 543,096 + MMJJ_RS02880 0.16 +2.2 543,116 - MMJJ_RS02880 0.24 -0.9 543,116 - MMJJ_RS02880 0.24 -1.4 543,121 - MMJJ_RS02880 0.26 +3.3 543,121 - MMJJ_RS02880 0.26 -0.7 543,124 - MMJJ_RS02880 0.27 -2.1 543,132 - MMJJ_RS02880 0.30 +2.0 543,132 - MMJJ_RS02880 0.30 +0.4 543,161 - MMJJ_RS02880 0.40 +2.9 543,161 - MMJJ_RS02880 0.40 -0.3 543,162 + MMJJ_RS02880 0.41 +1.8 543,162 + MMJJ_RS02880 0.41 +0.4 543,169 - MMJJ_RS02880 0.43 -1.0 543,170 + MMJJ_RS02880 0.44 +0.2 543,172 - MMJJ_RS02880 0.44 +0.4 543,197 + MMJJ_RS02880 0.53 -0.9 543,199 - MMJJ_RS02880 0.54 -2.1 543,212 + MMJJ_RS02880 0.59 -3.4 543,212 + MMJJ_RS02880 0.59 -3.4 543,242 - MMJJ_RS02880 0.70 -0.2 543,242 - MMJJ_RS02880 0.70 +1.4 543,250 + MMJJ_RS02880 0.73 -3.1 543,256 - MMJJ_RS02880 0.75 -1.1 543,256 - MMJJ_RS02880 0.75 -2.6 543,259 - MMJJ_RS02880 0.76 +1.5 543,259 - MMJJ_RS02880 0.76 -0.6 543,260 + MMJJ_RS02880 0.77 -3.8 543,266 + MMJJ_RS02880 0.79 +0.4 543,266 + MMJJ_RS02880 0.79 -3.4 543,299 - +2.2 543,305 + -1.5 543,311 + +1.5 543,311 + -1.1 543,325 - +0.8 543,363 - -1.0 543,366 + -4.1 543,373 - -0.1 543,403 + +0.1 543,409 + +0.4 543,449 + +2.9 543,462 - -3.2 543,462 - -0.1 543,531 - +1.9 543,532 + -2.4 543,582 + MMJJ_RS02885 0.22 -1.6 543,625 + MMJJ_RS02885 0.34 +1.8 543,655 + MMJJ_RS02885 0.42 -2.5 543,695 - MMJJ_RS02885 0.54 +0.1 543,695 - MMJJ_RS02885 0.54 +2.0 543,696 + MMJJ_RS02885 0.54 -1.1 543,750 - MMJJ_RS02885 0.69 +0.9 543,753 - MMJJ_RS02885 0.70 +0.4 543,760 - MMJJ_RS02885 0.72 +0.5 543,855 - -2.3 543,855 - -1.3 543,855 - +0.3 543,856 + +0.8 543,856 + +0.8 543,856 + +0.6 543,920 - +2.1 544,077 + MMJJ_RS02890 0.24 +0.5 544,080 - MMJJ_RS02890 0.24 -0.9 544,101 - MMJJ_RS02890 0.27 -3.8 544,106 - MMJJ_RS02890 0.27 +4.1 544,107 + MMJJ_RS02890 0.28 -1.8 544,107 + MMJJ_RS02890 0.28 +1.8 544,111 + MMJJ_RS02890 0.28 +1.0 544,111 + MMJJ_RS02890 0.28 -3.0 544,122 - MMJJ_RS02890 0.29 +2.8 544,241 - MMJJ_RS02890 0.43 +2.4 544,300 + MMJJ_RS02890 0.50 -1.4 544,300 + MMJJ_RS02890 0.50 -1.9 544,357 + MMJJ_RS02890 0.57 +2.0 544,364 - MMJJ_RS02890 0.57 +2.2 544,365 + MMJJ_RS02890 0.58 -3.0 544,368 - MMJJ_RS02890 0.58 +0.6 544,369 + MMJJ_RS02890 0.58 +3.1 544,371 + MMJJ_RS02890 0.58 +0.9 544,398 - MMJJ_RS02890 0.61 +1.5 544,398 - MMJJ_RS02890 0.61 +0.9 544,398 - MMJJ_RS02890 0.61 +0.8 544,399 + MMJJ_RS02890 0.62 -2.4 544,399 + MMJJ_RS02890 0.62 +0.8 544,399 + MMJJ_RS02890 0.62 -1.4 544,403 - MMJJ_RS02890 0.62 +3.3 544,404 + MMJJ_RS02890 0.62 +0.8 544,429 - MMJJ_RS02890 0.65 +3.2 544,502 + MMJJ_RS02890 0.74 -3.0 544,502 + MMJJ_RS02890 0.74 +1.9 544,505 - MMJJ_RS02890 0.74 -1.2 544,510 + MMJJ_RS02890 0.74 -0.6 544,533 - MMJJ_RS02890 0.77 +2.6 544,534 + MMJJ_RS02890 0.77 +0.1 544,620 - MMJJ_RS02890 0.87 -3.2 544,620 - MMJJ_RS02890 0.87 +2.3 544,621 + MMJJ_RS02890 0.87 +2.9 544,630 + MMJJ_RS02890 0.88 -3.8 544,692 - +1.5 544,722 + +0.4 544,725 + -2.4 544,745 + -0.9 544,805 - +3.3 544,846 - MMJJ_RS02895 0.14 -2.3 544,853 + MMJJ_RS02895 0.15 -2.2 544,853 + MMJJ_RS02895 0.15 +2.0 544,881 + MMJJ_RS02895 0.18 +1.8 544,887 - MMJJ_RS02895 0.19 +0.8 544,888 + MMJJ_RS02895 0.19 +1.5 544,890 + MMJJ_RS02895 0.20 -1.9 544,890 + MMJJ_RS02895 0.20 +1.6 544,931 - MMJJ_RS02895 0.24 +1.8 544,932 + MMJJ_RS02895 0.24 -2.0 544,956 + MMJJ_RS02895 0.27 -0.5 544,988 + MMJJ_RS02895 0.31 +0.4 545,107 - MMJJ_RS02895 0.45 -1.6 545,156 + MMJJ_RS02895 0.51 +2.3 545,207 + MMJJ_RS02895 0.57 +0.5 545,227 - MMJJ_RS02895 0.59 +1.9 545,227 - MMJJ_RS02895 0.59 -1.6 545,239 - MMJJ_RS02895 0.61 +2.2 545,240 + MMJJ_RS02895 0.61 -1.3 545,252 - MMJJ_RS02895 0.62 +0.4 545,273 + MMJJ_RS02895 0.65 +1.4 545,291 - MMJJ_RS02895 0.67 +3.6 545,291 - MMJJ_RS02895 0.67 +0.8 545,291 - MMJJ_RS02895 0.67 -0.2 545,292 + MMJJ_RS02895 0.67 -1.2 545,356 + MMJJ_RS02895 0.75 -1.1 545,357 - MMJJ_RS02895 0.75 +0.5 545,358 + MMJJ_RS02895 0.75 -2.3 545,358 + MMJJ_RS02895 0.75 +1.4 545,359 - +1.4 545,359 - MMJJ_RS02895 0.75 -3.0 545,359 - MMJJ_RS02895 0.75 +1.5 545,359 - MMJJ_RS02895 0.75 -3.6 545,359 - MMJJ_RS02895 0.75 -2.5 545,360 + MMJJ_RS02895 0.75 -2.1 545,363 + MMJJ_RS02895 0.75 -4.3 545,370 + MMJJ_RS02895 0.76 -0.2 545,381 - MMJJ_RS02895 0.78 +5.5 545,438 + MMJJ_RS02895 0.84 -1.0 545,460 + MMJJ_RS02895 0.87 +2.1 545,462 - MMJJ_RS02895 0.87 +1.4 545,468 + MMJJ_RS02895 0.88 +0.8 545,471 - MMJJ_RS02895 0.88 -0.9 545,472 + MMJJ_RS02895 0.88 +2.2 545,472 + MMJJ_RS02895 0.88 -2.1 545,501 + +1.9 545,531 - -2.1 545,568 - -0.1 545,588 - +3.7 545,640 + +2.0 545,641 - -0.4 545,644 + -1.6 545,691 - +1.9 545,697 + +0.4 545,702 - -0.2 545,702 - +0.0 545,702 - -2.6 545,702 - -1.4 545,702 - +1.3 545,702 - +3.1 545,703 + +4.3 545,703 + -1.4 545,703 + +3.1
Or see this region's nucleotide sequence