Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02315

Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02305 and MMJJ_RS02310 are separated by 194 nucleotidesMMJJ_RS02310 and MMJJ_RS02315 are separated by 88 nucleotidesMMJJ_RS02315 and MMJJ_RS02320 are separated by 119 nucleotidesMMJJ_RS02320 and MMJJ_RS02325 are separated by 97 nucleotides MMJJ_RS02305: MMJJ_RS02305 - hypothetical protein, at 435,503 to 436,078 _RS02305 MMJJ_RS02310: MMJJ_RS02310 - ABC transporter ATP-binding protein, at 436,273 to 436,977 _RS02310 MMJJ_RS02315: MMJJ_RS02315 - magnesium chelatase, at 437,066 to 437,710 _RS02315 MMJJ_RS02320: MMJJ_RS02320 - VWA domain-containing protein, at 437,830 to 438,564 _RS02320 MMJJ_RS02325: MMJJ_RS02325 - hypothetical protein, at 438,662 to 439,618 _RS02325 Position (kb) 437 438Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 436.066 kb on - strandat 436.080 kb on - strandat 436.080 kb on - strandat 436.080 kb on - strandat 436.080 kb on - strandat 436.081 kb on + strandat 436.081 kb on + strandat 436.081 kb on + strandat 436.114 kb on - strandat 436.114 kb on - strandat 436.178 kb on + strandat 436.184 kb on + strandat 436.189 kb on - strandat 436.190 kb on + strandat 436.248 kb on + strandat 436.272 kb on - strandat 436.273 kb on + strandat 436.273 kb on + strandat 436.273 kb on + strandat 436.285 kb on + strandat 436.287 kb on + strandat 436.313 kb on + strandat 436.365 kb on + strand, within MMJJ_RS02310at 436.365 kb on + strand, within MMJJ_RS02310at 436.365 kb on + strand, within MMJJ_RS02310at 436.365 kb on + strand, within MMJJ_RS02310at 436.369 kb on + strand, within MMJJ_RS02310at 436.369 kb on + strand, within MMJJ_RS02310at 436.428 kb on - strand, within MMJJ_RS02310at 436.433 kb on - strand, within MMJJ_RS02310at 436.434 kb on + strand, within MMJJ_RS02310at 436.434 kb on + strand, within MMJJ_RS02310at 436.474 kb on + strand, within MMJJ_RS02310at 436.479 kb on - strand, within MMJJ_RS02310at 436.494 kb on - strand, within MMJJ_RS02310at 436.511 kb on - strand, within MMJJ_RS02310at 436.557 kb on - strand, within MMJJ_RS02310at 436.562 kb on - strand, within MMJJ_RS02310at 436.766 kb on - strand, within MMJJ_RS02310at 436.767 kb on + strand, within MMJJ_RS02310at 436.785 kb on - strand, within MMJJ_RS02310at 436.785 kb on - strand, within MMJJ_RS02310at 436.785 kb on - strand, within MMJJ_RS02310at 436.823 kb on - strand, within MMJJ_RS02310at 436.863 kb on - strand, within MMJJ_RS02310at 436.863 kb on - strand, within MMJJ_RS02310at 436.866 kb on - strand, within MMJJ_RS02310at 436.872 kb on - strand, within MMJJ_RS02310at 436.873 kb on + strand, within MMJJ_RS02310at 436.873 kb on + strand, within MMJJ_RS02310at 436.873 kb on + strand, within MMJJ_RS02310at 436.898 kb on + strand, within MMJJ_RS02310at 436.919 kb on - strandat 436.942 kb on + strandat 436.942 kb on + strandat 436.942 kb on + strandat 436.944 kb on + strandat 436.944 kb on + strandat 436.944 kb on + strandat 436.979 kb on + strandat 436.988 kb on + strandat 437.028 kb on - strandat 437.054 kb on - strandat 437.055 kb on + strandat 437.082 kb on + strandat 437.087 kb on + strandat 437.153 kb on + strand, within MMJJ_RS02315at 437.175 kb on - strand, within MMJJ_RS02315at 437.176 kb on + strand, within MMJJ_RS02315at 437.185 kb on - strand, within MMJJ_RS02315at 437.185 kb on - strand, within MMJJ_RS02315at 437.186 kb on + strand, within MMJJ_RS02315at 437.221 kb on + strand, within MMJJ_RS02315at 437.221 kb on + strand, within MMJJ_RS02315at 437.227 kb on - strand, within MMJJ_RS02315at 437.240 kb on - strand, within MMJJ_RS02315at 437.240 kb on - strand, within MMJJ_RS02315at 437.290 kb on + strand, within MMJJ_RS02315at 437.330 kb on - strand, within MMJJ_RS02315at 437.339 kb on - strand, within MMJJ_RS02315at 437.339 kb on - strand, within MMJJ_RS02315at 437.340 kb on + strand, within MMJJ_RS02315at 437.422 kb on + strand, within MMJJ_RS02315at 437.446 kb on + strand, within MMJJ_RS02315at 437.446 kb on + strand, within MMJJ_RS02315at 437.481 kb on - strand, within MMJJ_RS02315at 437.490 kb on - strand, within MMJJ_RS02315at 437.527 kb on - strand, within MMJJ_RS02315at 437.527 kb on - strand, within MMJJ_RS02315at 437.536 kb on - strand, within MMJJ_RS02315at 437.537 kb on + strand, within MMJJ_RS02315at 437.550 kb on - strand, within MMJJ_RS02315at 437.586 kb on - strand, within MMJJ_RS02315at 437.587 kb on + strand, within MMJJ_RS02315at 437.587 kb on + strand, within MMJJ_RS02315at 437.591 kb on + strand, within MMJJ_RS02315at 437.635 kb on - strand, within MMJJ_RS02315at 437.688 kb on - strandat 437.708 kb on - strandat 437.770 kb on + strandat 437.879 kb on - strandat 437.918 kb on + strand, within MMJJ_RS02320at 437.919 kb on - strand, within MMJJ_RS02320at 437.919 kb on - strand, within MMJJ_RS02320at 437.920 kb on + strand, within MMJJ_RS02320at 437.920 kb on + strand, within MMJJ_RS02320at 437.920 kb on + strand, within MMJJ_RS02320at 437.954 kb on - strand, within MMJJ_RS02320at 437.955 kb on + strand, within MMJJ_RS02320at 438.158 kb on - strand, within MMJJ_RS02320at 438.169 kb on - strand, within MMJJ_RS02320at 438.170 kb on + strand, within MMJJ_RS02320at 438.172 kb on + strand, within MMJJ_RS02320at 438.210 kb on + strand, within MMJJ_RS02320at 438.222 kb on - strand, within MMJJ_RS02320at 438.223 kb on + strand, within MMJJ_RS02320at 438.239 kb on - strand, within MMJJ_RS02320at 438.240 kb on + strand, within MMJJ_RS02320at 438.301 kb on + strand, within MMJJ_RS02320at 438.312 kb on + strand, within MMJJ_RS02320at 438.371 kb on - strand, within MMJJ_RS02320at 438.371 kb on - strand, within MMJJ_RS02320at 438.410 kb on - strand, within MMJJ_RS02320at 438.410 kb on - strand, within MMJJ_RS02320at 438.465 kb on - strand, within MMJJ_RS02320at 438.471 kb on + strand, within MMJJ_RS02320at 438.471 kb on + strand, within MMJJ_RS02320at 438.473 kb on + strand, within MMJJ_RS02320at 438.473 kb on + strand, within MMJJ_RS02320at 438.486 kb on - strand, within MMJJ_RS02320at 438.507 kb on - strandat 438.507 kb on - strandat 438.508 kb on + strandat 438.508 kb on + strandat 438.508 kb on + strandat 438.508 kb on + strandat 438.558 kb on - strandat 438.563 kb on + strandat 438.563 kb on + strandat 438.566 kb on - strandat 438.566 kb on - strandat 438.567 kb on + strandat 438.614 kb on - strandat 438.627 kb on + strandat 438.631 kb on - strandat 438.645 kb on - strandat 438.690 kb on + strandat 438.692 kb on - strandat 438.692 kb on - strandat 438.693 kb on + strandat 438.695 kb on - strandat 438.695 kb on - strandat 438.696 kb on + strandat 438.696 kb on + strandat 438.696 kb on + strandat 438.697 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Nitrofurantoin 0.025 mM
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436,066 - -2.5
436,080 - +2.0
436,080 - -1.4
436,080 - +1.0
436,080 - -3.5
436,081 + -0.9
436,081 + -1.7
436,081 + +0.5
436,114 - +0.5
436,114 - +3.2
436,178 + -4.6
436,184 + +1.5
436,189 - -0.1
436,190 + +0.5
436,248 + -1.6
436,272 - -0.6
436,273 + -0.1
436,273 + -0.1
436,273 + -0.9
436,285 + +2.5
436,287 + +2.2
436,313 + +0.8
436,365 + MMJJ_RS02310 0.13 +0.6
436,365 + MMJJ_RS02310 0.13 +0.7
436,365 + MMJJ_RS02310 0.13 -2.5
436,365 + MMJJ_RS02310 0.13 +3.7
436,369 + MMJJ_RS02310 0.14 -2.5
436,369 + MMJJ_RS02310 0.14 -0.5
436,428 - MMJJ_RS02310 0.22 -0.6
436,433 - MMJJ_RS02310 0.23 -0.0
436,434 + MMJJ_RS02310 0.23 +2.1
436,434 + MMJJ_RS02310 0.23 -1.8
436,474 + MMJJ_RS02310 0.29 -2.7
436,479 - MMJJ_RS02310 0.29 -2.7
436,494 - MMJJ_RS02310 0.31 +1.4
436,511 - MMJJ_RS02310 0.34 +3.5
436,557 - MMJJ_RS02310 0.40 +1.3
436,562 - MMJJ_RS02310 0.41 +2.9
436,766 - MMJJ_RS02310 0.70 +0.0
436,767 + MMJJ_RS02310 0.70 -0.5
436,785 - MMJJ_RS02310 0.73 -0.5
436,785 - MMJJ_RS02310 0.73 -3.3
436,785 - MMJJ_RS02310 0.73 -0.7
436,823 - MMJJ_RS02310 0.78 -4.1
436,863 - MMJJ_RS02310 0.84 +0.4
436,863 - MMJJ_RS02310 0.84 +0.1
436,866 - MMJJ_RS02310 0.84 +2.6
436,872 - MMJJ_RS02310 0.85 +1.6
436,873 + MMJJ_RS02310 0.85 +2.7
436,873 + MMJJ_RS02310 0.85 -3.8
436,873 + MMJJ_RS02310 0.85 +1.9
436,898 + MMJJ_RS02310 0.89 -2.9
436,919 - -1.4
436,942 + +1.7
436,942 + -2.3
436,942 + -0.5
436,944 + +0.8
436,944 + -0.6
436,944 + +2.1
436,979 + -3.3
436,988 + -2.4
437,028 - +3.4
437,054 - +2.0
437,055 + +2.0
437,082 + -1.9
437,087 + +1.5
437,153 + MMJJ_RS02315 0.13 +0.5
437,175 - MMJJ_RS02315 0.17 +0.4
437,176 + MMJJ_RS02315 0.17 -0.0
437,185 - MMJJ_RS02315 0.18 -2.6
437,185 - MMJJ_RS02315 0.18 +0.9
437,186 + MMJJ_RS02315 0.19 +1.4
437,221 + MMJJ_RS02315 0.24 +1.8
437,221 + MMJJ_RS02315 0.24 +0.8
437,227 - MMJJ_RS02315 0.25 +0.5
437,240 - MMJJ_RS02315 0.27 +0.5
437,240 - MMJJ_RS02315 0.27 -2.6
437,290 + MMJJ_RS02315 0.35 -0.3
437,330 - MMJJ_RS02315 0.41 -0.5
437,339 - MMJJ_RS02315 0.42 +2.9
437,339 - MMJJ_RS02315 0.42 +4.2
437,340 + MMJJ_RS02315 0.42 -2.7
437,422 + MMJJ_RS02315 0.55 +3.4
437,446 + MMJJ_RS02315 0.59 +2.2
437,446 + MMJJ_RS02315 0.59 -0.1
437,481 - MMJJ_RS02315 0.64 +3.4
437,490 - MMJJ_RS02315 0.66 -3.1
437,527 - MMJJ_RS02315 0.71 +3.0
437,527 - MMJJ_RS02315 0.71 +1.4
437,536 - MMJJ_RS02315 0.73 -0.1
437,537 + MMJJ_RS02315 0.73 -0.8
437,550 - MMJJ_RS02315 0.75 +0.7
437,586 - MMJJ_RS02315 0.81 -2.7
437,587 + MMJJ_RS02315 0.81 +2.5
437,587 + MMJJ_RS02315 0.81 +2.1
437,591 + MMJJ_RS02315 0.81 +0.3
437,635 - MMJJ_RS02315 0.88 -2.2
437,688 - +1.1
437,708 - -0.5
437,770 + +1.8
437,879 - -3.3
437,918 + MMJJ_RS02320 0.12 +2.7
437,919 - MMJJ_RS02320 0.12 -1.0
437,919 - MMJJ_RS02320 0.12 -1.9
437,920 + MMJJ_RS02320 0.12 +0.3
437,920 + MMJJ_RS02320 0.12 +2.1
437,920 + MMJJ_RS02320 0.12 -1.2
437,954 - MMJJ_RS02320 0.17 +1.5
437,955 + MMJJ_RS02320 0.17 -0.9
438,158 - MMJJ_RS02320 0.45 +2.4
438,169 - MMJJ_RS02320 0.46 +2.8
438,170 + MMJJ_RS02320 0.46 +2.7
438,172 + MMJJ_RS02320 0.47 +1.0
438,210 + MMJJ_RS02320 0.52 -3.1
438,222 - MMJJ_RS02320 0.53 -0.9
438,223 + MMJJ_RS02320 0.53 +3.1
438,239 - MMJJ_RS02320 0.56 -0.9
438,240 + MMJJ_RS02320 0.56 -1.0
438,301 + MMJJ_RS02320 0.64 -1.9
438,312 + MMJJ_RS02320 0.66 -1.5
438,371 - MMJJ_RS02320 0.74 +0.7
438,371 - MMJJ_RS02320 0.74 -1.7
438,410 - MMJJ_RS02320 0.79 +3.2
438,410 - MMJJ_RS02320 0.79 +2.0
438,465 - MMJJ_RS02320 0.86 +0.1
438,471 + MMJJ_RS02320 0.87 -3.9
438,471 + MMJJ_RS02320 0.87 -2.2
438,473 + MMJJ_RS02320 0.87 -2.6
438,473 + MMJJ_RS02320 0.87 -0.5
438,486 - MMJJ_RS02320 0.89 -1.7
438,507 - -1.3
438,507 - +0.0
438,508 + -1.6
438,508 + -0.3
438,508 + +2.5
438,508 + +0.6
438,558 - -1.5
438,563 + +3.6
438,563 + -2.9
438,566 - -0.4
438,566 - -2.1
438,567 + +1.1
438,614 - -1.9
438,627 + +2.2
438,631 - +3.1
438,645 - -2.9
438,690 + -0.2
438,692 - -0.1
438,692 - +2.8
438,693 + +1.7
438,695 - +1.9
438,695 - +0.6
438,696 + -1.4
438,696 + -2.2
438,696 + +1.1
438,697 - -2.0

Or see this region's nucleotide sequence