Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02280 and MMJJ_RS02285 are separated by 423 nucleotides MMJJ_RS02285 and MMJJ_RS02290 are separated by 1 nucleotides MMJJ_RS02290 and MMJJ_RS02295 are separated by 13 nucleotides
MMJJ_RS02280: MMJJ_RS02280 - sulfate permease, at 430,831 to 432,489
_RS02280
MMJJ_RS02285: MMJJ_RS02285 - class III signal peptide-containing protein, at 432,913 to 433,134
_RS02285
MMJJ_RS02290: MMJJ_RS02290 - MarR family transcriptional regulator, at 433,136 to 433,762
_RS02290
MMJJ_RS02295: MMJJ_RS02295 - hypothetical protein, at 433,776 to 434,501
_RS02295
Position (kb) 432
433
434 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 431.919 kb on - strand, within MMJJ_RS02280 at 431.919 kb on - strand, within MMJJ_RS02280 at 431.920 kb on + strand, within MMJJ_RS02280 at 431.996 kb on - strand, within MMJJ_RS02280 at 432.026 kb on - strand, within MMJJ_RS02280 at 432.105 kb on + strand, within MMJJ_RS02280 at 432.190 kb on + strand, within MMJJ_RS02280 at 432.254 kb on - strand, within MMJJ_RS02280 at 432.254 kb on - strand, within MMJJ_RS02280 at 432.315 kb on - strand, within MMJJ_RS02280 at 432.315 kb on - strand, within MMJJ_RS02280 at 432.316 kb on + strand, within MMJJ_RS02280 at 432.328 kb on + strand at 432.350 kb on - strand at 432.378 kb on - strand at 432.378 kb on - strand at 432.402 kb on - strand at 432.423 kb on + strand at 432.446 kb on - strand at 432.447 kb on + strand at 432.450 kb on + strand at 432.455 kb on - strand at 432.456 kb on + strand at 432.477 kb on + strand at 432.562 kb on - strand at 432.617 kb on + strand at 432.621 kb on + strand at 432.657 kb on - strand at 432.706 kb on - strand at 432.706 kb on - strand at 432.707 kb on + strand at 432.710 kb on - strand at 432.756 kb on - strand at 432.757 kb on + strand at 432.811 kb on - strand at 432.812 kb on + strand at 432.817 kb on - strand at 432.817 kb on - strand at 432.818 kb on + strand at 432.818 kb on + strand at 432.818 kb on + strand at 432.838 kb on - strand at 432.839 kb on + strand at 432.839 kb on + strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.844 kb on - strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.845 kb on + strand at 432.846 kb on - strand at 432.846 kb on - strand at 432.846 kb on - strand at 432.846 kb on - strand at 432.846 kb on - strand at 432.846 kb on - strand at 432.846 kb on - strand at 432.846 kb on - strand at 432.846 kb on - strand at 432.846 kb on - strand at 432.846 kb on - strand at 432.846 kb on - strand at 432.847 kb on + strand at 432.847 kb on + strand at 432.847 kb on + strand at 432.847 kb on + strand at 432.847 kb on + strand at 432.847 kb on + strand at 432.847 kb on + strand at 432.847 kb on + strand at 432.847 kb on + strand at 432.847 kb on + strand at 432.847 kb on + strand at 432.848 kb on - strand at 432.848 kb on - strand at 432.848 kb on - strand at 432.848 kb on - strand at 432.848 kb on - strand at 432.849 kb on + strand at 432.849 kb on + strand at 432.849 kb on + strand at 432.849 kb on + strand at 432.849 kb on + strand at 432.849 kb on + strand at 432.849 kb on + strand at 432.849 kb on + strand at 432.849 kb on + strand at 432.862 kb on - strand at 432.868 kb on - strand at 432.869 kb on + strand at 432.869 kb on + strand at 432.869 kb on + strand at 432.869 kb on + strand at 432.873 kb on + strand at 432.873 kb on + strand at 432.887 kb on + strand at 432.895 kb on - strand at 432.912 kb on - strand at 432.913 kb on + strand at 433.019 kb on - strand, within MMJJ_RS02285 at 433.019 kb on - strand, within MMJJ_RS02285 at 433.020 kb on + strand, within MMJJ_RS02285 at 433.027 kb on + strand, within MMJJ_RS02285 at 433.082 kb on - strand, within MMJJ_RS02285 at 433.083 kb on + strand, within MMJJ_RS02285 at 433.121 kb on - strand at 433.121 kb on - strand at 433.125 kb on - strand at 433.126 kb on + strand at 433.126 kb on + strand at 433.133 kb on + strand at 433.138 kb on + strand at 433.139 kb on - strand at 433.162 kb on - strand at 433.163 kb on + strand at 433.166 kb on - strand at 433.180 kb on + strand at 433.185 kb on + strand at 433.199 kb on + strand, within MMJJ_RS02290 at 433.206 kb on + strand, within MMJJ_RS02290 at 433.215 kb on + strand, within MMJJ_RS02290 at 433.295 kb on - strand, within MMJJ_RS02290 at 433.296 kb on + strand, within MMJJ_RS02290 at 433.302 kb on + strand, within MMJJ_RS02290 at 433.352 kb on - strand, within MMJJ_RS02290 at 433.472 kb on + strand, within MMJJ_RS02290 at 433.472 kb on + strand, within MMJJ_RS02290 at 433.490 kb on - strand, within MMJJ_RS02290 at 433.490 kb on - strand, within MMJJ_RS02290 at 433.501 kb on - strand, within MMJJ_RS02290 at 433.511 kb on + strand, within MMJJ_RS02290 at 433.548 kb on - strand, within MMJJ_RS02290 at 433.554 kb on + strand, within MMJJ_RS02290 at 433.562 kb on + strand, within MMJJ_RS02290 at 433.565 kb on - strand, within MMJJ_RS02290 at 433.565 kb on - strand, within MMJJ_RS02290 at 433.566 kb on + strand, within MMJJ_RS02290 at 433.566 kb on + strand, within MMJJ_RS02290 at 433.572 kb on + strand, within MMJJ_RS02290 at 433.587 kb on + strand, within MMJJ_RS02290 at 433.587 kb on + strand, within MMJJ_RS02290 at 433.641 kb on - strand, within MMJJ_RS02290 at 433.641 kb on - strand, within MMJJ_RS02290 at 433.642 kb on + strand, within MMJJ_RS02290 at 433.642 kb on + strand, within MMJJ_RS02290 at 433.642 kb on + strand, within MMJJ_RS02290 at 433.642 kb on + strand, within MMJJ_RS02290 at 433.642 kb on + strand, within MMJJ_RS02290 at 433.662 kb on + strand, within MMJJ_RS02290 at 433.664 kb on - strand, within MMJJ_RS02290 at 433.685 kb on - strand, within MMJJ_RS02290 at 433.685 kb on - strand, within MMJJ_RS02290 at 433.703 kb on - strand at 433.704 kb on + strand at 433.707 kb on + strand at 433.724 kb on - strand at 433.734 kb on - strand at 433.734 kb on - strand at 433.734 kb on - strand at 433.734 kb on - strand at 433.734 kb on - strand at 433.734 kb on - strand at 433.735 kb on + strand at 433.735 kb on + strand at 433.735 kb on + strand at 433.735 kb on + strand at 433.735 kb on + strand at 433.735 kb on + strand at 433.735 kb on + strand at 433.735 kb on + strand at 433.736 kb on - strand at 433.736 kb on - strand at 433.736 kb on - strand at 433.736 kb on - strand at 433.737 kb on + strand at 433.737 kb on + strand at 433.737 kb on + strand at 433.747 kb on - strand at 433.762 kb on - strand at 433.777 kb on - strand at 433.838 kb on + strand at 433.838 kb on + strand at 433.841 kb on - strand at 433.842 kb on + strand at 433.842 kb on + strand at 433.864 kb on + strand, within MMJJ_RS02295 at 433.876 kb on - strand, within MMJJ_RS02295 at 433.876 kb on - strand, within MMJJ_RS02295 at 433.876 kb on - strand, within MMJJ_RS02295 at 433.877 kb on + strand, within MMJJ_RS02295 at 433.877 kb on + strand, within MMJJ_RS02295 at 433.877 kb on + strand, within MMJJ_RS02295 at 433.877 kb on + strand, within MMJJ_RS02295 at 433.877 kb on + strand, within MMJJ_RS02295 at 433.877 kb on + strand, within MMJJ_RS02295 at 433.877 kb on + strand, within MMJJ_RS02295 at 433.906 kb on + strand, within MMJJ_RS02295 at 433.909 kb on - strand, within MMJJ_RS02295 at 433.909 kb on - strand, within MMJJ_RS02295 at 433.910 kb on + strand, within MMJJ_RS02295 at 433.910 kb on + strand, within MMJJ_RS02295 at 433.926 kb on + strand, within MMJJ_RS02295 at 433.929 kb on - strand, within MMJJ_RS02295 at 433.929 kb on - strand, within MMJJ_RS02295 at 433.929 kb on - strand, within MMJJ_RS02295 at 433.929 kb on - strand, within MMJJ_RS02295 at 433.929 kb on - strand, within MMJJ_RS02295 at 433.930 kb on + strand, within MMJJ_RS02295 at 433.930 kb on + strand, within MMJJ_RS02295 at 433.930 kb on + strand, within MMJJ_RS02295 at 433.930 kb on + strand, within MMJJ_RS02295 at 433.930 kb on + strand, within MMJJ_RS02295 at 433.931 kb on - strand, within MMJJ_RS02295 at 433.931 kb on - strand, within MMJJ_RS02295 at 433.931 kb on - strand, within MMJJ_RS02295 at 433.932 kb on + strand, within MMJJ_RS02295 at 433.932 kb on + strand, within MMJJ_RS02295 at 433.932 kb on + strand, within MMJJ_RS02295 at 433.936 kb on - strand, within MMJJ_RS02295 at 433.943 kb on - strand, within MMJJ_RS02295 at 433.944 kb on + strand, within MMJJ_RS02295 at 433.951 kb on + strand, within MMJJ_RS02295 at 433.952 kb on - strand, within MMJJ_RS02295 at 433.983 kb on - strand, within MMJJ_RS02295 at 433.984 kb on + strand, within MMJJ_RS02295 at 434.001 kb on - strand, within MMJJ_RS02295 at 434.002 kb on + strand, within MMJJ_RS02295 at 434.010 kb on + strand, within MMJJ_RS02295 at 434.010 kb on + strand, within MMJJ_RS02295 at 434.109 kb on + strand, within MMJJ_RS02295 at 434.109 kb on + strand, within MMJJ_RS02295 at 434.111 kb on - strand, within MMJJ_RS02295 at 434.112 kb on + strand, within MMJJ_RS02295 at 434.133 kb on - strand, within MMJJ_RS02295 at 434.133 kb on - strand, within MMJJ_RS02295 at 434.133 kb on - strand, within MMJJ_RS02295
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Nitrofurantoin 0.025 mM remove 431,919 - MMJJ_RS02280 0.66 +2.1 431,919 - MMJJ_RS02280 0.66 -2.7 431,920 + MMJJ_RS02280 0.66 -1.2 431,996 - MMJJ_RS02280 0.70 -0.7 432,026 - MMJJ_RS02280 0.72 -0.6 432,105 + MMJJ_RS02280 0.77 +1.7 432,190 + MMJJ_RS02280 0.82 +1.0 432,254 - MMJJ_RS02280 0.86 +1.1 432,254 - MMJJ_RS02280 0.86 -1.5 432,315 - MMJJ_RS02280 0.89 +0.6 432,315 - MMJJ_RS02280 0.89 -2.6 432,316 + MMJJ_RS02280 0.90 -0.5 432,328 + -0.8 432,350 - -0.3 432,378 - -1.9 432,378 - +0.8 432,402 - +3.3 432,423 + +0.2 432,446 - +3.2 432,447 + -0.5 432,450 + -2.6 432,455 - +0.6 432,456 + +1.0 432,477 + -0.6 432,562 - +0.0 432,617 + +3.4 432,621 + -1.0 432,657 - +3.4 432,706 - -1.4 432,706 - +1.6 432,707 + +0.6 432,710 - +2.6 432,756 - +3.6 432,757 + +3.8 432,811 - +0.2 432,812 + +0.0 432,817 - +1.1 432,817 - +3.6 432,818 + -3.6 432,818 + -1.0 432,818 + -0.7 432,838 - -1.4 432,839 + -0.5 432,839 + -3.1 432,844 - +1.3 432,844 - +1.2 432,844 - -0.3 432,844 - -2.0 432,844 - +0.4 432,844 - +0.6 432,844 - +2.8 432,844 - -0.6 432,844 - +1.2 432,844 - -3.7 432,844 - +1.7 432,844 - +0.2 432,844 - -0.1 432,844 - -0.6 432,844 - -0.0 432,844 - +1.8 432,845 + +0.8 432,845 + -3.0 432,845 + -2.3 432,845 + +0.3 432,845 + +2.6 432,845 + -4.0 432,845 + -1.9 432,845 + -2.3 432,845 + +0.6 432,845 + -1.4 432,845 + -3.6 432,845 + +1.2 432,845 + +3.7 432,845 + +0.9 432,845 + -4.8 432,845 + +0.9 432,845 + +2.8 432,845 + -3.2 432,846 - -1.2 432,846 - +2.9 432,846 - -3.1 432,846 - -2.6 432,846 - +1.0 432,846 - -0.0 432,846 - +1.7 432,846 - +0.4 432,846 - -0.8 432,846 - +1.5 432,846 - -0.9 432,846 - -0.6 432,847 + +1.6 432,847 + -0.1 432,847 + -0.5 432,847 + -2.5 432,847 + -2.6 432,847 + +3.0 432,847 + +2.0 432,847 + -3.0 432,847 + +1.9 432,847 + +2.1 432,847 + -2.9 432,848 - -2.0 432,848 - -0.9 432,848 - -1.3 432,848 - +3.4 432,848 - +1.8 432,849 + +0.4 432,849 + +0.4 432,849 + -0.9 432,849 + +0.7 432,849 + -1.6 432,849 + +0.5 432,849 + +0.8 432,849 + -3.1 432,849 + +2.3 432,862 - -0.9 432,868 - +1.7 432,869 + -0.2 432,869 + +3.0 432,869 + -3.0 432,869 + +1.6 432,873 + -0.6 432,873 + -0.1 432,887 + +0.1 432,895 - -0.6 432,912 - +1.4 432,913 + +1.4 433,019 - MMJJ_RS02285 0.48 +0.3 433,019 - MMJJ_RS02285 0.48 -1.3 433,020 + MMJJ_RS02285 0.48 -0.0 433,027 + MMJJ_RS02285 0.51 -2.1 433,082 - MMJJ_RS02285 0.76 -2.8 433,083 + MMJJ_RS02285 0.77 -1.6 433,121 - -3.1 433,121 - +0.9 433,125 - +1.9 433,126 + +1.6 433,126 + +2.7 433,133 + +2.7 433,138 + -0.1 433,139 - +1.6 433,162 - -3.9 433,163 + +3.6 433,166 - +3.9 433,180 + -3.8 433,185 + +1.8 433,199 + MMJJ_RS02290 0.10 -2.4 433,206 + MMJJ_RS02290 0.11 +0.9 433,215 + MMJJ_RS02290 0.13 -2.4 433,295 - MMJJ_RS02290 0.25 -0.1 433,296 + MMJJ_RS02290 0.26 +0.4 433,302 + MMJJ_RS02290 0.26 -2.9 433,352 - MMJJ_RS02290 0.34 -1.2 433,472 + MMJJ_RS02290 0.54 -1.6 433,472 + MMJJ_RS02290 0.54 -0.0 433,490 - MMJJ_RS02290 0.56 -2.9 433,490 - MMJJ_RS02290 0.56 +0.4 433,501 - MMJJ_RS02290 0.58 +1.4 433,511 + MMJJ_RS02290 0.60 -3.7 433,548 - MMJJ_RS02290 0.66 -1.6 433,554 + MMJJ_RS02290 0.67 -0.2 433,562 + MMJJ_RS02290 0.68 +0.0 433,565 - MMJJ_RS02290 0.68 +1.3 433,565 - MMJJ_RS02290 0.68 +2.4 433,566 + MMJJ_RS02290 0.69 +1.3 433,566 + MMJJ_RS02290 0.69 -1.0 433,572 + MMJJ_RS02290 0.70 +1.1 433,587 + MMJJ_RS02290 0.72 -0.9 433,587 + MMJJ_RS02290 0.72 -1.9 433,641 - MMJJ_RS02290 0.81 -1.8 433,641 - MMJJ_RS02290 0.81 -1.3 433,642 + MMJJ_RS02290 0.81 -3.6 433,642 + MMJJ_RS02290 0.81 -0.3 433,642 + MMJJ_RS02290 0.81 +1.3 433,642 + MMJJ_RS02290 0.81 -1.0 433,642 + MMJJ_RS02290 0.81 +1.1 433,662 + MMJJ_RS02290 0.84 +0.4 433,664 - MMJJ_RS02290 0.84 -0.0 433,685 - MMJJ_RS02290 0.88 -1.1 433,685 - MMJJ_RS02290 0.88 +2.4 433,703 - +1.8 433,704 + -1.7 433,707 + +0.8 433,724 - -2.0 433,734 - +0.4 433,734 - -0.6 433,734 - -2.4 433,734 - -1.9 433,734 - -2.8 433,734 - -4.3 433,735 + -0.1 433,735 + +1.6 433,735 + +0.3 433,735 + -0.6 433,735 + -2.1 433,735 + -1.9 433,735 + +3.4 433,735 + -3.1 433,736 - -0.3 433,736 - -2.3 433,736 - -3.4 433,736 - +1.2 433,737 + -2.0 433,737 + +0.6 433,737 + +3.8 433,747 - -1.5 433,762 - -0.3 433,777 - +0.8 433,838 + -0.3 433,838 + +3.9 433,841 - -1.4 433,842 + +0.7 433,842 + -0.9 433,864 + MMJJ_RS02295 0.12 -0.6 433,876 - MMJJ_RS02295 0.14 +2.1 433,876 - MMJJ_RS02295 0.14 -2.9 433,876 - MMJJ_RS02295 0.14 +1.3 433,877 + MMJJ_RS02295 0.14 +3.5 433,877 + MMJJ_RS02295 0.14 -4.0 433,877 + MMJJ_RS02295 0.14 +2.3 433,877 + MMJJ_RS02295 0.14 -2.9 433,877 + MMJJ_RS02295 0.14 -0.8 433,877 + MMJJ_RS02295 0.14 +2.9 433,877 + MMJJ_RS02295 0.14 -1.5 433,906 + MMJJ_RS02295 0.18 -2.3 433,909 - MMJJ_RS02295 0.18 -0.8 433,909 - MMJJ_RS02295 0.18 -1.7 433,910 + MMJJ_RS02295 0.18 +2.1 433,910 + MMJJ_RS02295 0.18 -1.1 433,926 + MMJJ_RS02295 0.21 +2.9 433,929 - MMJJ_RS02295 0.21 +1.7 433,929 - MMJJ_RS02295 0.21 -2.7 433,929 - MMJJ_RS02295 0.21 +1.0 433,929 - MMJJ_RS02295 0.21 +4.6 433,929 - MMJJ_RS02295 0.21 -0.1 433,930 + MMJJ_RS02295 0.21 +0.6 433,930 + MMJJ_RS02295 0.21 -1.4 433,930 + MMJJ_RS02295 0.21 -2.1 433,930 + MMJJ_RS02295 0.21 -1.4 433,930 + MMJJ_RS02295 0.21 +1.6 433,931 - MMJJ_RS02295 0.21 +0.1 433,931 - MMJJ_RS02295 0.21 -1.3 433,931 - MMJJ_RS02295 0.21 +2.6 433,932 + MMJJ_RS02295 0.21 -3.4 433,932 + MMJJ_RS02295 0.21 +0.0 433,932 + MMJJ_RS02295 0.21 +3.0 433,936 - MMJJ_RS02295 0.22 -1.4 433,943 - MMJJ_RS02295 0.23 +1.4 433,944 + MMJJ_RS02295 0.23 +0.7 433,951 + MMJJ_RS02295 0.24 -2.6 433,952 - MMJJ_RS02295 0.24 -1.6 433,983 - MMJJ_RS02295 0.29 -2.6 433,984 + MMJJ_RS02295 0.29 +0.5 434,001 - MMJJ_RS02295 0.31 +0.7 434,002 + MMJJ_RS02295 0.31 -0.3 434,010 + MMJJ_RS02295 0.32 -2.5 434,010 + MMJJ_RS02295 0.32 -2.5 434,109 + MMJJ_RS02295 0.46 +0.2 434,109 + MMJJ_RS02295 0.46 -3.3 434,111 - MMJJ_RS02295 0.46 -0.1 434,112 + MMJJ_RS02295 0.46 +0.1 434,133 - MMJJ_RS02295 0.49 -2.6 434,133 - MMJJ_RS02295 0.49 -3.6 434,133 - MMJJ_RS02295 0.49 +3.2
Or see this region's nucleotide sequence