Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01585 and MMJJ_RS01590 are separated by 208 nucleotides MMJJ_RS01590 and MMJJ_RS01595 are separated by 42 nucleotides
MMJJ_RS01585: MMJJ_RS01585 - type I restriction endonuclease, at 308,201 to 309,325
_RS01585
MMJJ_RS01590: MMJJ_RS01590 - adenine phosphoribosyltransferase, at 309,534 to 310,052
_RS01590
MMJJ_RS01595: MMJJ_RS01595 - U32 family peptidase, at 310,095 to 311,306
_RS01595
Position (kb) 309
310
311 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 308.534 kb on + strand, within MMJJ_RS01585 at 308.547 kb on + strand, within MMJJ_RS01585 at 308.547 kb on + strand, within MMJJ_RS01585 at 308.548 kb on - strand, within MMJJ_RS01585 at 308.579 kb on + strand, within MMJJ_RS01585 at 308.793 kb on - strand, within MMJJ_RS01585 at 308.793 kb on - strand, within MMJJ_RS01585 at 308.860 kb on - strand, within MMJJ_RS01585 at 308.860 kb on - strand, within MMJJ_RS01585 at 308.861 kb on + strand, within MMJJ_RS01585 at 308.861 kb on + strand, within MMJJ_RS01585 at 308.864 kb on + strand, within MMJJ_RS01585 at 308.871 kb on - strand, within MMJJ_RS01585 at 308.875 kb on - strand, within MMJJ_RS01585 at 308.884 kb on - strand, within MMJJ_RS01585 at 308.884 kb on - strand, within MMJJ_RS01585 at 308.897 kb on + strand, within MMJJ_RS01585 at 308.926 kb on - strand, within MMJJ_RS01585 at 308.927 kb on + strand, within MMJJ_RS01585 at 308.985 kb on - strand, within MMJJ_RS01585 at 308.986 kb on + strand, within MMJJ_RS01585 at 308.986 kb on + strand, within MMJJ_RS01585 at 308.990 kb on + strand, within MMJJ_RS01585 at 308.990 kb on + strand, within MMJJ_RS01585 at 308.990 kb on + strand, within MMJJ_RS01585 at 309.014 kb on - strand, within MMJJ_RS01585 at 309.014 kb on - strand, within MMJJ_RS01585 at 309.033 kb on - strand, within MMJJ_RS01585 at 309.033 kb on - strand at 309.044 kb on - strand, within MMJJ_RS01585 at 309.044 kb on - strand, within MMJJ_RS01585 at 309.045 kb on + strand, within MMJJ_RS01585 at 309.055 kb on - strand, within MMJJ_RS01585 at 309.056 kb on + strand, within MMJJ_RS01585 at 309.056 kb on + strand, within MMJJ_RS01585 at 309.066 kb on - strand, within MMJJ_RS01585 at 309.066 kb on - strand, within MMJJ_RS01585 at 309.067 kb on + strand, within MMJJ_RS01585 at 309.067 kb on + strand, within MMJJ_RS01585 at 309.073 kb on - strand, within MMJJ_RS01585 at 309.074 kb on + strand, within MMJJ_RS01585 at 309.089 kb on - strand, within MMJJ_RS01585 at 309.090 kb on + strand, within MMJJ_RS01585 at 309.099 kb on - strand, within MMJJ_RS01585 at 309.099 kb on - strand, within MMJJ_RS01585 at 309.099 kb on - strand, within MMJJ_RS01585 at 309.100 kb on + strand, within MMJJ_RS01585 at 309.101 kb on - strand, within MMJJ_RS01585 at 309.102 kb on + strand, within MMJJ_RS01585 at 309.102 kb on + strand, within MMJJ_RS01585 at 309.115 kb on + strand, within MMJJ_RS01585 at 309.137 kb on + strand, within MMJJ_RS01585 at 309.141 kb on - strand, within MMJJ_RS01585 at 309.142 kb on + strand, within MMJJ_RS01585 at 309.154 kb on - strand, within MMJJ_RS01585 at 309.154 kb on - strand, within MMJJ_RS01585 at 309.155 kb on + strand, within MMJJ_RS01585 at 309.160 kb on - strand, within MMJJ_RS01585 at 309.160 kb on - strand, within MMJJ_RS01585 at 309.160 kb on - strand, within MMJJ_RS01585 at 309.161 kb on + strand, within MMJJ_RS01585 at 309.161 kb on + strand, within MMJJ_RS01585 at 309.161 kb on + strand, within MMJJ_RS01585 at 309.161 kb on + strand, within MMJJ_RS01585 at 309.161 kb on + strand, within MMJJ_RS01585 at 309.163 kb on - strand, within MMJJ_RS01585 at 309.164 kb on + strand, within MMJJ_RS01585 at 309.164 kb on + strand, within MMJJ_RS01585 at 309.190 kb on - strand, within MMJJ_RS01585 at 309.202 kb on - strand, within MMJJ_RS01585 at 309.244 kb on - strand at 309.252 kb on - strand at 309.253 kb on + strand at 309.253 kb on + strand at 309.259 kb on - strand at 309.295 kb on + strand at 309.301 kb on + strand at 309.323 kb on - strand at 309.351 kb on + strand at 309.356 kb on - strand at 309.383 kb on + strand at 309.401 kb on - strand at 309.406 kb on - strand at 309.406 kb on - strand at 309.406 kb on - strand at 309.406 kb on - strand at 309.409 kb on - strand at 309.409 kb on - strand at 309.409 kb on - strand at 309.409 kb on - strand at 309.410 kb on + strand at 309.410 kb on + strand at 309.411 kb on - strand at 309.411 kb on - strand at 309.411 kb on - strand at 309.411 kb on - strand at 309.411 kb on - strand at 309.411 kb on - strand at 309.412 kb on + strand at 309.412 kb on + strand at 309.412 kb on + strand at 309.413 kb on - strand at 309.414 kb on + strand at 309.414 kb on + strand at 309.414 kb on + strand at 309.414 kb on + strand at 309.432 kb on + strand at 309.432 kb on + strand at 309.434 kb on - strand at 309.435 kb on + strand at 309.436 kb on - strand at 309.437 kb on + strand at 309.437 kb on + strand at 309.438 kb on - strand at 309.438 kb on - strand at 309.438 kb on - strand at 309.438 kb on - strand at 309.439 kb on + strand at 309.439 kb on + strand at 309.448 kb on - strand at 309.449 kb on + strand at 309.453 kb on - strand at 309.489 kb on - strand at 309.494 kb on - strand at 309.502 kb on + strand at 309.541 kb on - strand at 309.563 kb on + strand at 309.613 kb on - strand, within MMJJ_RS01590 at 309.917 kb on + strand, within MMJJ_RS01590 at 310.025 kb on + strand at 310.037 kb on - strand at 310.073 kb on - strand at 310.276 kb on + strand, within MMJJ_RS01595 at 310.279 kb on - strand, within MMJJ_RS01595 at 310.315 kb on - strand, within MMJJ_RS01595 at 310.330 kb on - strand, within MMJJ_RS01595 at 310.344 kb on + strand, within MMJJ_RS01595 at 310.373 kb on + strand, within MMJJ_RS01595 at 310.512 kb on + strand, within MMJJ_RS01595 at 310.553 kb on + strand, within MMJJ_RS01595 at 310.556 kb on - strand, within MMJJ_RS01595 at 310.568 kb on + strand, within MMJJ_RS01595 at 310.623 kb on - strand, within MMJJ_RS01595 at 310.639 kb on - strand, within MMJJ_RS01595 at 310.672 kb on - strand, within MMJJ_RS01595 at 310.703 kb on + strand, within MMJJ_RS01595 at 310.732 kb on - strand, within MMJJ_RS01595 at 310.733 kb on + strand, within MMJJ_RS01595 at 310.801 kb on - strand, within MMJJ_RS01595 at 310.802 kb on + strand, within MMJJ_RS01595 at 310.852 kb on + strand, within MMJJ_RS01595 at 310.912 kb on + strand, within MMJJ_RS01595 at 310.956 kb on - strand, within MMJJ_RS01595 at 310.957 kb on + strand, within MMJJ_RS01595 at 311.014 kb on - strand, within MMJJ_RS01595 at 311.014 kb on - strand, within MMJJ_RS01595 at 311.019 kb on - strand, within MMJJ_RS01595 at 311.047 kb on + strand, within MMJJ_RS01595
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Nitrofurantoin 0.025 mM remove 308,534 + MMJJ_RS01585 0.30 +0.2 308,547 + MMJJ_RS01585 0.31 -0.5 308,547 + MMJJ_RS01585 0.31 +2.9 308,548 - MMJJ_RS01585 0.31 +0.3 308,579 + MMJJ_RS01585 0.34 -1.4 308,793 - MMJJ_RS01585 0.53 -2.0 308,793 - MMJJ_RS01585 0.53 -1.0 308,860 - MMJJ_RS01585 0.59 -2.5 308,860 - MMJJ_RS01585 0.59 -3.2 308,861 + MMJJ_RS01585 0.59 +2.3 308,861 + MMJJ_RS01585 0.59 +0.9 308,864 + MMJJ_RS01585 0.59 +0.4 308,871 - MMJJ_RS01585 0.60 -2.6 308,875 - MMJJ_RS01585 0.60 +2.0 308,884 - MMJJ_RS01585 0.61 -2.8 308,884 - MMJJ_RS01585 0.61 +0.3 308,897 + MMJJ_RS01585 0.62 +3.5 308,926 - MMJJ_RS01585 0.64 +0.1 308,927 + MMJJ_RS01585 0.65 -0.5 308,985 - MMJJ_RS01585 0.70 -3.4 308,986 + MMJJ_RS01585 0.70 -0.2 308,986 + MMJJ_RS01585 0.70 +2.1 308,990 + MMJJ_RS01585 0.70 -3.0 308,990 + MMJJ_RS01585 0.70 -1.5 308,990 + MMJJ_RS01585 0.70 -0.2 309,014 - MMJJ_RS01585 0.72 -0.3 309,014 - MMJJ_RS01585 0.72 +1.0 309,033 - MMJJ_RS01585 0.74 -1.5 309,033 - -1.0 309,044 - MMJJ_RS01585 0.75 -2.2 309,044 - MMJJ_RS01585 0.75 +0.5 309,045 + MMJJ_RS01585 0.75 +1.3 309,055 - MMJJ_RS01585 0.76 -1.8 309,056 + MMJJ_RS01585 0.76 -0.8 309,056 + MMJJ_RS01585 0.76 +2.2 309,066 - MMJJ_RS01585 0.77 -2.7 309,066 - MMJJ_RS01585 0.77 -2.1 309,067 + MMJJ_RS01585 0.77 -0.2 309,067 + MMJJ_RS01585 0.77 +3.3 309,073 - MMJJ_RS01585 0.78 -3.6 309,074 + MMJJ_RS01585 0.78 -3.1 309,089 - MMJJ_RS01585 0.79 -0.2 309,090 + MMJJ_RS01585 0.79 -0.4 309,099 - MMJJ_RS01585 0.80 -0.7 309,099 - MMJJ_RS01585 0.80 +2.8 309,099 - MMJJ_RS01585 0.80 +2.3 309,100 + MMJJ_RS01585 0.80 +2.2 309,101 - MMJJ_RS01585 0.80 -2.6 309,102 + MMJJ_RS01585 0.80 +0.1 309,102 + MMJJ_RS01585 0.80 +1.9 309,115 + MMJJ_RS01585 0.81 +0.3 309,137 + MMJJ_RS01585 0.83 +1.7 309,141 - MMJJ_RS01585 0.84 +0.1 309,142 + MMJJ_RS01585 0.84 -2.9 309,154 - MMJJ_RS01585 0.85 -1.2 309,154 - MMJJ_RS01585 0.85 -2.0 309,155 + MMJJ_RS01585 0.85 +1.3 309,160 - MMJJ_RS01585 0.85 -2.7 309,160 - MMJJ_RS01585 0.85 +3.6 309,160 - MMJJ_RS01585 0.85 -2.2 309,161 + MMJJ_RS01585 0.85 +2.6 309,161 + MMJJ_RS01585 0.85 +2.3 309,161 + MMJJ_RS01585 0.85 -0.2 309,161 + MMJJ_RS01585 0.85 +0.3 309,161 + MMJJ_RS01585 0.85 -0.7 309,163 - MMJJ_RS01585 0.86 +2.5 309,164 + MMJJ_RS01585 0.86 -1.0 309,164 + MMJJ_RS01585 0.86 +0.8 309,190 - MMJJ_RS01585 0.88 +0.5 309,202 - MMJJ_RS01585 0.89 +0.9 309,244 - -2.2 309,252 - +0.5 309,253 + -3.2 309,253 + +1.2 309,259 - -0.0 309,295 + +1.7 309,301 + +0.3 309,323 - +1.4 309,351 + +1.2 309,356 - +3.0 309,383 + -0.2 309,401 - -0.0 309,406 - +2.5 309,406 - -3.8 309,406 - +1.0 309,406 - -0.5 309,409 - +2.5 309,409 - +3.3 309,409 - +0.2 309,409 - +1.5 309,410 + +1.1 309,410 + +4.3 309,411 - -2.2 309,411 - +0.5 309,411 - +1.3 309,411 - -3.7 309,411 - +1.3 309,411 - -1.0 309,412 + +2.4 309,412 + +2.1 309,412 + -2.1 309,413 - +0.8 309,414 + +1.8 309,414 + +1.3 309,414 + -1.2 309,414 + -3.1 309,432 + +2.8 309,432 + -0.2 309,434 - +1.2 309,435 + +2.4 309,436 - -2.4 309,437 + -2.8 309,437 + -2.0 309,438 - -1.1 309,438 - -1.8 309,438 - -1.4 309,438 - +0.3 309,439 + +1.3 309,439 + -1.4 309,448 - +1.9 309,449 + +0.5 309,453 - -1.5 309,489 - -0.2 309,494 - +0.2 309,502 + -4.1 309,541 - +0.3 309,563 + -1.7 309,613 - MMJJ_RS01590 0.15 +1.4 309,917 + MMJJ_RS01590 0.74 +1.7 310,025 + +1.0 310,037 - -1.2 310,073 - +1.7 310,276 + MMJJ_RS01595 0.15 +1.7 310,279 - MMJJ_RS01595 0.15 +0.8 310,315 - MMJJ_RS01595 0.18 +4.0 310,330 - MMJJ_RS01595 0.19 -1.8 310,344 + MMJJ_RS01595 0.21 +0.5 310,373 + MMJJ_RS01595 0.23 +1.3 310,512 + MMJJ_RS01595 0.34 -0.7 310,553 + MMJJ_RS01595 0.38 -2.9 310,556 - MMJJ_RS01595 0.38 -2.7 310,568 + MMJJ_RS01595 0.39 -1.2 310,623 - MMJJ_RS01595 0.44 +0.0 310,639 - MMJJ_RS01595 0.45 -1.5 310,672 - MMJJ_RS01595 0.48 +2.8 310,703 + MMJJ_RS01595 0.50 -0.2 310,732 - MMJJ_RS01595 0.53 +1.3 310,733 + MMJJ_RS01595 0.53 -0.8 310,801 - MMJJ_RS01595 0.58 +0.2 310,802 + MMJJ_RS01595 0.58 +1.9 310,852 + MMJJ_RS01595 0.62 -1.0 310,912 + MMJJ_RS01595 0.67 -3.5 310,956 - MMJJ_RS01595 0.71 -3.0 310,957 + MMJJ_RS01595 0.71 +3.4 311,014 - MMJJ_RS01595 0.76 +0.1 311,014 - MMJJ_RS01595 0.76 +0.3 311,019 - MMJJ_RS01595 0.76 +2.5 311,047 + MMJJ_RS01595 0.79 -1.4
Or see this region's nucleotide sequence