Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00775 and MMJJ_RS00780 are separated by 11 nucleotides MMJJ_RS00780 and MMJJ_RS00785 are separated by 28 nucleotides MMJJ_RS00785 and MMJJ_RS00790 are separated by 132 nucleotides MMJJ_RS00790 and MMJJ_RS00795 are separated by 14 nucleotides
MMJJ_RS00775: MMJJ_RS00775 - hypothetical protein, at 147,959 to 148,429
_RS00775
MMJJ_RS00780: MMJJ_RS00780 - M48 family metallopeptidase, at 148,441 to 149,109
_RS00780
MMJJ_RS00785: MMJJ_RS00785 - hypothetical protein, at 149,138 to 149,329
_RS00785
MMJJ_RS00790: MMJJ_RS00790 - ribonuclease H family protein, at 149,462 to 150,067
_RS00790
MMJJ_RS00795: MMJJ_RS00795 - 2-hydroxyacyl-CoA dehydratase family protein, at 150,082 to 151,203
_RS00795
Position (kb) 149
150 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 148.180 kb on + strand, within MMJJ_RS00775 at 148.197 kb on + strand, within MMJJ_RS00775 at 148.197 kb on + strand, within MMJJ_RS00775 at 148.198 kb on - strand, within MMJJ_RS00775 at 148.198 kb on - strand, within MMJJ_RS00775 at 148.236 kb on + strand, within MMJJ_RS00775 at 148.287 kb on - strand, within MMJJ_RS00775 at 148.288 kb on + strand, within MMJJ_RS00775 at 148.338 kb on - strand, within MMJJ_RS00775 at 148.338 kb on - strand, within MMJJ_RS00775 at 148.353 kb on - strand, within MMJJ_RS00775 at 148.353 kb on - strand, within MMJJ_RS00775 at 148.354 kb on + strand, within MMJJ_RS00775 at 148.354 kb on + strand, within MMJJ_RS00775 at 148.380 kb on - strand, within MMJJ_RS00775 at 148.380 kb on - strand, within MMJJ_RS00775 at 148.395 kb on - strand at 148.415 kb on + strand at 148.415 kb on + strand at 148.419 kb on - strand at 148.419 kb on - strand at 148.420 kb on + strand at 148.427 kb on - strand at 148.428 kb on + strand at 148.470 kb on - strand at 148.506 kb on - strand at 148.519 kb on + strand, within MMJJ_RS00780 at 148.537 kb on - strand, within MMJJ_RS00780 at 148.565 kb on - strand, within MMJJ_RS00780 at 148.565 kb on - strand, within MMJJ_RS00780 at 148.565 kb on - strand, within MMJJ_RS00780 at 148.565 kb on - strand, within MMJJ_RS00780 at 148.572 kb on - strand, within MMJJ_RS00780 at 148.607 kb on + strand, within MMJJ_RS00780 at 148.689 kb on - strand, within MMJJ_RS00780 at 148.693 kb on - strand, within MMJJ_RS00780 at 148.698 kb on - strand, within MMJJ_RS00780 at 148.700 kb on - strand, within MMJJ_RS00780 at 148.700 kb on - strand, within MMJJ_RS00780 at 148.700 kb on - strand, within MMJJ_RS00780 at 148.700 kb on - strand, within MMJJ_RS00780 at 148.701 kb on + strand, within MMJJ_RS00780 at 148.701 kb on + strand, within MMJJ_RS00780 at 148.796 kb on + strand, within MMJJ_RS00780 at 148.796 kb on + strand, within MMJJ_RS00780 at 148.835 kb on - strand, within MMJJ_RS00780 at 148.855 kb on - strand, within MMJJ_RS00780 at 148.856 kb on + strand, within MMJJ_RS00780 at 148.856 kb on + strand, within MMJJ_RS00780 at 148.866 kb on - strand, within MMJJ_RS00780 at 148.866 kb on - strand, within MMJJ_RS00780 at 148.867 kb on + strand, within MMJJ_RS00780 at 148.868 kb on - strand, within MMJJ_RS00780 at 148.869 kb on + strand, within MMJJ_RS00780 at 148.883 kb on - strand, within MMJJ_RS00780 at 148.986 kb on - strand, within MMJJ_RS00780 at 148.986 kb on - strand, within MMJJ_RS00780 at 148.995 kb on - strand, within MMJJ_RS00780 at 149.000 kb on - strand, within MMJJ_RS00780 at 149.001 kb on + strand, within MMJJ_RS00780 at 149.032 kb on - strand, within MMJJ_RS00780 at 149.063 kb on - strand at 149.063 kb on - strand at 149.105 kb on + strand at 149.171 kb on - strand, within MMJJ_RS00785 at 149.290 kb on - strand, within MMJJ_RS00785 at 149.291 kb on + strand, within MMJJ_RS00785 at 149.352 kb on + strand at 149.356 kb on - strand at 149.395 kb on + strand at 149.399 kb on - strand at 149.400 kb on + strand at 149.412 kb on + strand at 149.418 kb on + strand at 149.426 kb on - strand at 149.426 kb on - strand at 149.426 kb on - strand at 149.426 kb on - strand at 149.427 kb on + strand at 149.427 kb on + strand at 149.428 kb on - strand at 149.428 kb on - strand at 149.429 kb on + strand at 149.429 kb on + strand at 149.429 kb on + strand at 149.430 kb on - strand at 149.430 kb on - strand at 149.430 kb on - strand at 149.431 kb on + strand at 149.431 kb on + strand at 149.431 kb on + strand at 149.431 kb on + strand at 149.473 kb on + strand at 149.473 kb on + strand at 149.474 kb on - strand at 149.475 kb on + strand at 149.475 kb on + strand at 149.573 kb on + strand, within MMJJ_RS00790 at 149.597 kb on - strand, within MMJJ_RS00790 at 149.601 kb on - strand, within MMJJ_RS00790 at 149.629 kb on - strand, within MMJJ_RS00790 at 149.634 kb on - strand, within MMJJ_RS00790 at 149.702 kb on + strand, within MMJJ_RS00790 at 149.709 kb on + strand, within MMJJ_RS00790 at 149.730 kb on - strand, within MMJJ_RS00790 at 149.731 kb on + strand, within MMJJ_RS00790 at 149.756 kb on + strand, within MMJJ_RS00790 at 149.871 kb on - strand, within MMJJ_RS00790 at 149.871 kb on - strand, within MMJJ_RS00790 at 149.873 kb on - strand, within MMJJ_RS00790 at 149.945 kb on - strand, within MMJJ_RS00790 at 149.948 kb on + strand, within MMJJ_RS00790 at 149.966 kb on - strand, within MMJJ_RS00790 at 150.019 kb on - strand at 150.040 kb on - strand at 150.041 kb on + strand at 150.041 kb on + strand at 150.074 kb on + strand at 150.079 kb on + strand at 150.118 kb on - strand at 150.159 kb on - strand at 150.160 kb on + strand at 150.160 kb on + strand at 150.200 kb on + strand, within MMJJ_RS00795 at 150.216 kb on - strand, within MMJJ_RS00795 at 150.217 kb on + strand, within MMJJ_RS00795 at 150.230 kb on - strand, within MMJJ_RS00795 at 150.231 kb on + strand, within MMJJ_RS00795 at 150.235 kb on - strand, within MMJJ_RS00795 at 150.236 kb on + strand, within MMJJ_RS00795 at 150.236 kb on + strand, within MMJJ_RS00795 at 150.236 kb on + strand, within MMJJ_RS00795 at 150.240 kb on - strand, within MMJJ_RS00795 at 150.240 kb on - strand, within MMJJ_RS00795 at 150.240 kb on - strand, within MMJJ_RS00795 at 150.240 kb on - strand, within MMJJ_RS00795 at 150.240 kb on - strand, within MMJJ_RS00795 at 150.241 kb on + strand, within MMJJ_RS00795 at 150.241 kb on + strand, within MMJJ_RS00795 at 150.241 kb on + strand, within MMJJ_RS00795 at 150.241 kb on + strand, within MMJJ_RS00795 at 150.241 kb on + strand, within MMJJ_RS00795 at 150.242 kb on - strand, within MMJJ_RS00795 at 150.242 kb on - strand, within MMJJ_RS00795 at 150.243 kb on + strand, within MMJJ_RS00795 at 150.243 kb on + strand, within MMJJ_RS00795 at 150.246 kb on + strand, within MMJJ_RS00795 at 150.246 kb on + strand, within MMJJ_RS00795 at 150.275 kb on + strand, within MMJJ_RS00795 at 150.285 kb on - strand, within MMJJ_RS00795
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Nitrofurantoin 0.025 mM remove 148,180 + MMJJ_RS00775 0.47 -0.3 148,197 + MMJJ_RS00775 0.51 +1.2 148,197 + MMJJ_RS00775 0.51 -3.0 148,198 - MMJJ_RS00775 0.51 -0.5 148,198 - MMJJ_RS00775 0.51 -3.2 148,236 + MMJJ_RS00775 0.59 +1.6 148,287 - MMJJ_RS00775 0.70 +2.2 148,288 + MMJJ_RS00775 0.70 -0.5 148,338 - MMJJ_RS00775 0.80 +2.0 148,338 - MMJJ_RS00775 0.80 +2.8 148,353 - MMJJ_RS00775 0.84 +0.7 148,353 - MMJJ_RS00775 0.84 +1.3 148,354 + MMJJ_RS00775 0.84 +2.7 148,354 + MMJJ_RS00775 0.84 +2.0 148,380 - MMJJ_RS00775 0.89 -0.3 148,380 - MMJJ_RS00775 0.89 -1.5 148,395 - -0.0 148,415 + +2.3 148,415 + +1.1 148,419 - -2.3 148,419 - -2.2 148,420 + +0.6 148,427 - -2.6 148,428 + +2.6 148,470 - -2.7 148,506 - +1.5 148,519 + MMJJ_RS00780 0.12 -2.2 148,537 - MMJJ_RS00780 0.14 +4.2 148,565 - MMJJ_RS00780 0.19 -0.3 148,565 - MMJJ_RS00780 0.19 -2.4 148,565 - MMJJ_RS00780 0.19 -0.6 148,565 - MMJJ_RS00780 0.19 -2.4 148,572 - MMJJ_RS00780 0.20 +2.4 148,607 + MMJJ_RS00780 0.25 -1.2 148,689 - MMJJ_RS00780 0.37 +1.2 148,693 - MMJJ_RS00780 0.38 -0.7 148,698 - MMJJ_RS00780 0.38 +1.9 148,700 - MMJJ_RS00780 0.39 -1.8 148,700 - MMJJ_RS00780 0.39 -2.0 148,700 - MMJJ_RS00780 0.39 +2.0 148,700 - MMJJ_RS00780 0.39 +1.3 148,701 + MMJJ_RS00780 0.39 -1.2 148,701 + MMJJ_RS00780 0.39 -1.3 148,796 + MMJJ_RS00780 0.53 -2.6 148,796 + MMJJ_RS00780 0.53 +0.7 148,835 - MMJJ_RS00780 0.59 -0.5 148,855 - MMJJ_RS00780 0.62 -0.4 148,856 + MMJJ_RS00780 0.62 -1.1 148,856 + MMJJ_RS00780 0.62 -0.7 148,866 - MMJJ_RS00780 0.64 +0.7 148,866 - MMJJ_RS00780 0.64 +3.4 148,867 + MMJJ_RS00780 0.64 +0.8 148,868 - MMJJ_RS00780 0.64 -0.4 148,869 + MMJJ_RS00780 0.64 -1.9 148,883 - MMJJ_RS00780 0.66 -3.0 148,986 - MMJJ_RS00780 0.81 +1.0 148,986 - MMJJ_RS00780 0.81 -0.9 148,995 - MMJJ_RS00780 0.83 -1.0 149,000 - MMJJ_RS00780 0.84 +1.2 149,001 + MMJJ_RS00780 0.84 +3.7 149,032 - MMJJ_RS00780 0.88 +1.3 149,063 - -1.3 149,063 - -1.0 149,105 + -2.3 149,171 - MMJJ_RS00785 0.17 -1.4 149,290 - MMJJ_RS00785 0.79 -3.2 149,291 + MMJJ_RS00785 0.80 -0.3 149,352 + +1.2 149,356 - +2.2 149,395 + +2.2 149,399 - -1.3 149,400 + -0.1 149,412 + +2.0 149,418 + -2.2 149,426 - -0.6 149,426 - +1.3 149,426 - +1.8 149,426 - +1.0 149,427 + +0.5 149,427 + -1.0 149,428 - -1.5 149,428 - +1.8 149,429 + +1.5 149,429 + -3.9 149,429 + +1.5 149,430 - -2.4 149,430 - -2.1 149,430 - -1.9 149,431 + +2.2 149,431 + +1.9 149,431 + -0.9 149,431 + -0.1 149,473 + +2.3 149,473 + -1.3 149,474 - +0.7 149,475 + +2.5 149,475 + -1.5 149,573 + MMJJ_RS00790 0.18 -0.4 149,597 - MMJJ_RS00790 0.22 +3.0 149,601 - MMJJ_RS00790 0.23 +1.4 149,629 - MMJJ_RS00790 0.28 +0.6 149,634 - MMJJ_RS00790 0.28 -0.3 149,702 + MMJJ_RS00790 0.40 +3.0 149,709 + MMJJ_RS00790 0.41 +1.5 149,730 - MMJJ_RS00790 0.44 +1.3 149,731 + MMJJ_RS00790 0.44 +3.6 149,756 + MMJJ_RS00790 0.49 -1.3 149,871 - MMJJ_RS00790 0.67 +1.5 149,871 - MMJJ_RS00790 0.67 +1.7 149,873 - MMJJ_RS00790 0.68 -0.4 149,945 - MMJJ_RS00790 0.80 +1.2 149,948 + MMJJ_RS00790 0.80 -0.3 149,966 - MMJJ_RS00790 0.83 -2.4 150,019 - +0.4 150,040 - -2.8 150,041 + -0.4 150,041 + -1.1 150,074 + -1.3 150,079 + -0.7 150,118 - +2.9 150,159 - -2.6 150,160 + +1.5 150,160 + -0.1 150,200 + MMJJ_RS00795 0.11 -1.8 150,216 - MMJJ_RS00795 0.12 -0.9 150,217 + MMJJ_RS00795 0.12 +3.6 150,230 - MMJJ_RS00795 0.13 +0.5 150,231 + MMJJ_RS00795 0.13 +1.4 150,235 - MMJJ_RS00795 0.14 +1.3 150,236 + MMJJ_RS00795 0.14 -2.0 150,236 + MMJJ_RS00795 0.14 -1.7 150,236 + MMJJ_RS00795 0.14 +2.2 150,240 - MMJJ_RS00795 0.14 -1.3 150,240 - MMJJ_RS00795 0.14 +2.0 150,240 - MMJJ_RS00795 0.14 -2.7 150,240 - MMJJ_RS00795 0.14 +1.5 150,240 - MMJJ_RS00795 0.14 +2.1 150,241 + MMJJ_RS00795 0.14 -0.0 150,241 + MMJJ_RS00795 0.14 -3.3 150,241 + MMJJ_RS00795 0.14 +1.4 150,241 + MMJJ_RS00795 0.14 +2.7 150,241 + MMJJ_RS00795 0.14 -0.9 150,242 - MMJJ_RS00795 0.14 -2.2 150,242 - MMJJ_RS00795 0.14 -1.5 150,243 + MMJJ_RS00795 0.14 +0.8 150,243 + MMJJ_RS00795 0.14 +1.0 150,246 + MMJJ_RS00795 0.15 +2.5 150,246 + MMJJ_RS00795 0.15 -2.3 150,275 + MMJJ_RS00795 0.17 -0.9 150,285 - MMJJ_RS00795 0.18 +0.4
Or see this region's nucleotide sequence