Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00610

Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Nitrofurantoin 0.025 mM
115,346	-		MMJJ_RS00605	0.22	-2.6
115,483	+		MMJJ_RS00605	0.34	-3.6
115,495	+		MMJJ_RS00605	0.35	-1.6
115,581	+		MMJJ_RS00605	0.42	+0.2
115,600	+		MMJJ_RS00605	0.43	-1.0
115,600	+		MMJJ_RS00605	0.43	+2.6
115,640	+		MMJJ_RS00605	0.47	+0.7
115,802	-		MMJJ_RS00605	0.60	-1.7
115,834	-		MMJJ_RS00605	0.63	-0.3
115,839	+		MMJJ_RS00605	0.63	-3.3
115,896	-		MMJJ_RS00605	0.68	+3.9
115,897	+		MMJJ_RS00605	0.68	-1.3
116,135	+		MMJJ_RS00605	0.88	-1.4
116,168	-				+1.8
116,173	+				+0.1
116,183	-				-1.0
116,183	-				-3.1
116,205	+				+1.9
116,205	+				-0.8
116,205	+				+1.2
116,208	-				-0.3
116,235	-				-0.1
116,236	+				-1.0
116,236	+				-1.3
116,256	-				+3.0
116,257	+				+1.3
116,257	+				+0.8
116,257	+				+2.7
116,269	+				+2.4
116,293	-				-1.2
116,307	-				+3.5
116,307	-				-3.3
116,318	-				+1.4
116,319	+				-2.3
116,322	-				+0.4
116,322	-				-1.0
116,323	+				-3.3
116,323	+				+0.3
116,323	+				+1.8
116,327	+				-1.3
116,327	+				+1.1
116,336	+				+1.6
116,336	+				+1.3
116,337	-				-3.3
116,372	+				-2.1
116,386	-				+0.3
116,386	-				-1.9
116,406	+				-2.8
116,406	+				-2.3
116,431	-		MMJJ_RS00610	0.12	-1.2
116,431	-		MMJJ_RS00610	0.12	+0.4
116,431	-		MMJJ_RS00610	0.12	-0.8
116,431	-		MMJJ_RS00610	0.12	+2.7
116,432	+		MMJJ_RS00610	0.12	+2.7
116,432	+		MMJJ_RS00610	0.12	-2.5
116,433	-		MMJJ_RS00610	0.12	-1.0
116,433	-		MMJJ_RS00610	0.12	+1.4
116,433	-		MMJJ_RS00610	0.12	+2.4
116,433	-		MMJJ_RS00610	0.12	+2.4
116,433	-		MMJJ_RS00610	0.12	-1.5
116,433	-		MMJJ_RS00610	0.12	+0.2
116,433	-		MMJJ_RS00610	0.12	-2.5
116,434	+		MMJJ_RS00610	0.12	+2.7
116,434	+		MMJJ_RS00610	0.12	-0.7
116,434	+		MMJJ_RS00610	0.12	-1.6
116,434	+		MMJJ_RS00610	0.12	+2.5
116,434	+		MMJJ_RS00610	0.12	-1.5
116,434	+		MMJJ_RS00610	0.12	-3.0
116,434	+		MMJJ_RS00610	0.12	+0.1
116,434	+		MMJJ_RS00610	0.12	-0.3
116,434	+		MMJJ_RS00610	0.12	-1.5
116,434	+		MMJJ_RS00610	0.12	+0.1
116,434	+		MMJJ_RS00610	0.12	+0.3
116,434	+		MMJJ_RS00610	0.12	-2.5
116,434	+		MMJJ_RS00610	0.12	-3.9
116,434	+		MMJJ_RS00610	0.12	+1.4
116,434	+		MMJJ_RS00610	0.12	+0.8
116,434	+		MMJJ_RS00610	0.12	-1.6
116,435	-		MMJJ_RS00610	0.12	+0.1
116,435	-		MMJJ_RS00610	0.12	-3.1
116,435	-		MMJJ_RS00610	0.12	+1.7
116,435	-		MMJJ_RS00610	0.12	-0.5
116,436	+		MMJJ_RS00610	0.12	-2.4
116,436	+		MMJJ_RS00610	0.12	+0.2
116,436	+		MMJJ_RS00610	0.12	+0.3
116,436	+		MMJJ_RS00610	0.12	+1.5
116,439	-		MMJJ_RS00610	0.13	+1.4
116,439	-		MMJJ_RS00610	0.13	-4.0
116,440	+		MMJJ_RS00610	0.13	+0.8
116,451	-		MMJJ_RS00610	0.14	+2.7
116,463	-		MMJJ_RS00610	0.15	-0.3
116,464	+		MMJJ_RS00610	0.15	+0.7
116,575	+		MMJJ_RS00610	0.27	-4.0
116,665	-		MMJJ_RS00610	0.36	+2.2
116,746	-		MMJJ_RS00610	0.45	-2.2
116,815	-		MMJJ_RS00610	0.52	+1.2
116,916	-		MMJJ_RS00610	0.63	+1.6
116,944	+		MMJJ_RS00610	0.66	+1.5
116,998	-		MMJJ_RS00610	0.71	-1.3
116,999	+		MMJJ_RS00610	0.71	-0.9
117,031	+		MMJJ_RS00610	0.75	+3.8
117,042	-		MMJJ_RS00610	0.76	-0.6
117,044	-		MMJJ_RS00610	0.76	+2.1
117,044	-		MMJJ_RS00610	0.76	+1.1
117,044	-		MMJJ_RS00610	0.76	-2.9
117,044	-		MMJJ_RS00610	0.76	-0.8
117,045	+		MMJJ_RS00610	0.76	+0.6
117,057	-		MMJJ_RS00610	0.78	+0.5
117,068	-		MMJJ_RS00610	0.79	+2.7
117,068	-		MMJJ_RS00610	0.79	-3.4
117,069	+		MMJJ_RS00610	0.79	-2.4
117,109	-		MMJJ_RS00610	0.83	+1.4
117,110	+		MMJJ_RS00610	0.83	-3.5
117,110	+		MMJJ_RS00610	0.83	-1.0
117,183	+				+1.0
117,183	+				+1.1
117,262	-				-1.3
117,293	-				-0.5
117,298	-				-1.5
117,299	+				-0.0
117,304	+				-1.9
117,313	-				+2.4
117,345	+				-2.8
117,455	-		MMJJ_RS00615	0.35	+0.4
117,456	+		MMJJ_RS00615	0.35	-1.4
117,480	+		MMJJ_RS00615	0.41	-3.2
117,480	+		MMJJ_RS00615	0.41	+2.2
117,522	-		MMJJ_RS00615	0.50	-0.7
117,523	+		MMJJ_RS00615	0.50	+4.0
117,523	+		MMJJ_RS00615	0.50	-0.5
117,626	+		MMJJ_RS00615	0.74	-3.2
117,655	+		MMJJ_RS00615	0.81	+4.1
117,659	-		MMJJ_RS00615	0.82	+2.7
117,692	+		MMJJ_RS00615	0.89	+2.0
117,698	-				+1.2
117,699	+				+3.0
117,758	+				+1.3
117,766	+				+2.5
117,784	-				-1.0
117,805	-				-1.3
117,805	-				+3.7
117,806	+				-3.3
117,806	+				+2.3
117,807	-				-0.0
117,807	-				+0.5
117,807	-				-1.0
117,808	+				+3.4
117,809	-				+1.6
117,809	-				+0.1
117,809	-				-1.5
117,809	-				-1.2
117,809	-				-3.7
117,809	-				-0.3
117,809	-				+1.6
117,809	-				+1.3
117,809	-				-2.7
117,809	-				+0.3
117,810	+				-1.3
117,810	+				-0.8
117,810	+				+1.9
117,810	+				+1.8
117,810	+				-2.6
117,810	+				+1.7
117,811	-				+1.6
117,811	-				+2.0
117,811	-				+0.4
117,811	-				+4.5
117,811	-				+2.0
117,811	-				+1.8
117,811	-				+0.3
117,811	-				+1.2
117,811	-				-2.2
117,812	+				-0.7
117,812	+				-2.5
117,813	-				+0.0
117,813	-				+0.4
117,813	-				-0.4
117,816	+				-2.1
117,816	+				-1.5
117,853	+				-2.4
117,858	-				-1.0
117,858	-				+1.1
117,940	+				+1.3
117,987	-				-1.4
117,987	-				+0.8
117,987	-				+4.1
117,988	+				-2.3
117,989	-				+1.4
117,989	-				+1.1
117,989	-				-1.2
117,989	-				-0.3
117,989	-				+1.9
117,990	+				+0.0
117,990	+				-0.7
117,990	+				+0.5
117,990	+				-1.7
117,990	+				+4.0
117,991	-				-2.9
117,991	-				+2.7
117,991	-				+1.6
117,991	-				-1.3
117,991	-				-1.9
117,991	-				+2.1
117,991	-				-0.9
117,992	+				+1.7
117,992	+				+0.8
117,992	+				-1.3
117,992	+				-0.2
117,992	+				+1.8
117,996	-		MMJJ_RS00620	0.10	+5.5
117,997	+		MMJJ_RS00620	0.10	+1.5
117,997	+		MMJJ_RS00620	0.10	-2.6
117,997	+		MMJJ_RS00620	0.10	-1.0
118,001	-		MMJJ_RS00620	0.11	-3.7
118,001	-		MMJJ_RS00620	0.11	+0.1
118,001	-		MMJJ_RS00620	0.11	-0.9
118,012	-		MMJJ_RS00620	0.11	+1.2
118,013	+		MMJJ_RS00620	0.12	+0.5
118,013	+		MMJJ_RS00620	0.12	+1.4
118,041	-		MMJJ_RS00620	0.14	-0.3
118,042	+		MMJJ_RS00620	0.14	-3.4
118,051	+		MMJJ_RS00620	0.15	+1.5
118,108	+		MMJJ_RS00620	0.19	+0.7
118,108	+		MMJJ_RS00620	0.19	+2.8
118,108	+		MMJJ_RS00620	0.19	+0.3
118,109	-		MMJJ_RS00620	0.19	+3.7
118,150	-		MMJJ_RS00620	0.22	+0.3
118,151	+		MMJJ_RS00620	0.22	-0.6
118,167	+		MMJJ_RS00620	0.24	+0.2
118,172	-		MMJJ_RS00620	0.24	-2.9
118,172	-		MMJJ_RS00620	0.24	+0.6
118,172	-		MMJJ_RS00620	0.24	-1.0
118,172	-		MMJJ_RS00620	0.24	+2.7
118,172	-		MMJJ_RS00620	0.24	+0.5
118,172	-		MMJJ_RS00620	0.24	-2.3
118,172	-		MMJJ_RS00620	0.24	+1.5
118,172	-		MMJJ_RS00620	0.24	-1.0
118,172	-		MMJJ_RS00620	0.24	+0.5
118,172	-		MMJJ_RS00620	0.24	-0.6
118,172	-		MMJJ_RS00620	0.24	+4.3
118,173	+		MMJJ_RS00620	0.24	-1.2
118,173	+		MMJJ_RS00620	0.24	-1.1
118,173	+		MMJJ_RS00620	0.24	+1.7
118,173	+		MMJJ_RS00620	0.24	+2.0
118,173	+		MMJJ_RS00620	0.24	+3.0
118,173	+		MMJJ_RS00620	0.24	-2.1
118,173	+		MMJJ_RS00620	0.24	+0.8
118,173	+		MMJJ_RS00620	0.24	+0.4
118,173	+		MMJJ_RS00620	0.24	-3.2
118,176	-		MMJJ_RS00620	0.24	-1.2
118,177	+		MMJJ_RS00620	0.24	-1.3
118,182	-		MMJJ_RS00620	0.25	-1.9
118,182	-		MMJJ_RS00620	0.25	+3.4
118,183	+		MMJJ_RS00620	0.25	+4.2
118,183	+		MMJJ_RS00620	0.25	+1.8
118,183	+		MMJJ_RS00620	0.25	+2.5
118,184	-		MMJJ_RS00620	0.25	+0.2
118,184	-		MMJJ_RS00620	0.25	-1.2
118,184	-		MMJJ_RS00620	0.25	-1.4
118,184	-		MMJJ_RS00620	0.25	+2.9
118,185	+		MMJJ_RS00620	0.25	-1.4
118,185	+		MMJJ_RS00620	0.25	+3.0
118,185	+		MMJJ_RS00620	0.25	+2.1
118,185	+		MMJJ_RS00620	0.25	-2.3
118,185	+		MMJJ_RS00620	0.25	+3.3
118,185	+		MMJJ_RS00620	0.25	+0.3
118,185	+		MMJJ_RS00620	0.25	+1.0
118,192	-		MMJJ_RS00620	0.26	+3.0
118,192	-		MMJJ_RS00620	0.26	+1.4
118,193	+		MMJJ_RS00620	0.26	+0.2
118,217	-		MMJJ_RS00620	0.27	-3.6
118,241	-		MMJJ_RS00620	0.29	-4.0
118,245	-		MMJJ_RS00620	0.30	-2.8
118,246	+		MMJJ_RS00620	0.30	+1.3