Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00010 and MMJJ_RS00015 are separated by 327 nucleotides
MMJJ_RS00010: MMJJ_RS00010 - D-aminoacyl-tRNA deacylase, at 440 to 1,204
_RS00010
MMJJ_RS00015: MMJJ_RS00015 - DNA topoisomerase VI subunit B, at 1,532 to 3,526
_RS00015
Position (kb) 0
1
2 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 0.055 kb on - strand at 0.055 kb on - strand at 0.056 kb on + strand at 0.056 kb on + strand at 0.056 kb on + strand at 0.057 kb on - strand at 0.066 kb on - strand at 0.069 kb on - strand at 0.070 kb on + strand at 0.088 kb on - strand at 0.088 kb on - strand at 0.093 kb on + strand at 0.093 kb on + strand at 0.098 kb on - strand at 0.098 kb on - strand at 0.099 kb on + strand at 0.099 kb on + strand at 0.103 kb on - strand at 0.122 kb on - strand at 0.143 kb on - strand at 0.143 kb on - strand at 0.143 kb on - strand at 0.144 kb on + strand at 0.144 kb on + strand at 0.144 kb on + strand at 0.168 kb on - strand at 0.168 kb on - strand at 0.168 kb on - strand at 0.168 kb on - strand at 0.169 kb on + strand at 0.169 kb on + strand at 0.169 kb on + strand at 0.169 kb on + strand at 0.170 kb on - strand at 0.170 kb on - strand at 0.170 kb on - strand at 0.170 kb on - strand at 0.171 kb on + strand at 0.171 kb on + strand at 0.171 kb on + strand at 0.171 kb on + strand at 0.171 kb on + strand at 0.171 kb on + strand at 0.171 kb on + strand at 0.171 kb on + strand at 0.172 kb on - strand at 0.172 kb on - strand at 0.222 kb on + strand at 0.232 kb on - strand at 0.256 kb on - strand at 0.344 kb on - strand at 0.355 kb on - strand at 0.355 kb on - strand at 0.355 kb on - strand at 0.355 kb on - strand at 0.355 kb on - strand at 0.355 kb on - strand at 0.356 kb on + strand at 0.356 kb on + strand at 0.356 kb on + strand at 0.356 kb on + strand at 0.357 kb on - strand at 0.358 kb on + strand at 0.358 kb on + strand at 0.358 kb on + strand at 0.367 kb on + strand at 0.371 kb on - strand at 0.371 kb on - strand at 0.372 kb on + strand at 0.372 kb on + strand at 0.372 kb on + strand at 0.377 kb on + strand at 0.377 kb on + strand at 0.377 kb on + strand at 0.386 kb on - strand at 0.386 kb on - strand at 0.386 kb on - strand at 0.386 kb on - strand at 0.386 kb on - strand at 0.387 kb on + strand at 0.387 kb on + strand at 0.387 kb on + strand at 0.387 kb on + strand at 0.387 kb on + strand at 0.398 kb on - strand at 0.399 kb on + strand at 0.399 kb on + strand at 0.402 kb on + strand at 0.402 kb on + strand at 0.403 kb on - strand at 0.403 kb on - strand at 0.404 kb on + strand at 0.405 kb on - strand at 0.406 kb on + strand at 0.420 kb on + strand at 0.461 kb on + strand at 0.482 kb on - strand at 0.497 kb on + strand at 0.566 kb on - strand, within MMJJ_RS00010 at 0.571 kb on - strand, within MMJJ_RS00010 at 0.571 kb on - strand, within MMJJ_RS00010 at 0.571 kb on - strand, within MMJJ_RS00010 at 0.615 kb on - strand, within MMJJ_RS00010 at 0.615 kb on - strand, within MMJJ_RS00010 at 0.616 kb on + strand, within MMJJ_RS00010 at 0.616 kb on + strand, within MMJJ_RS00010 at 0.616 kb on + strand, within MMJJ_RS00010 at 0.618 kb on - strand, within MMJJ_RS00010 at 0.619 kb on + strand, within MMJJ_RS00010 at 0.650 kb on + strand, within MMJJ_RS00010 at 0.728 kb on + strand, within MMJJ_RS00010 at 0.897 kb on - strand, within MMJJ_RS00010 at 0.902 kb on + strand, within MMJJ_RS00010 at 0.921 kb on + strand, within MMJJ_RS00010 at 0.921 kb on + strand, within MMJJ_RS00010 at 0.925 kb on - strand, within MMJJ_RS00010 at 0.925 kb on - strand, within MMJJ_RS00010 at 0.979 kb on - strand, within MMJJ_RS00010 at 1.003 kb on - strand, within MMJJ_RS00010 at 1.003 kb on - strand, within MMJJ_RS00010 at 1.004 kb on + strand, within MMJJ_RS00010 at 1.007 kb on - strand, within MMJJ_RS00010 at 1.007 kb on - strand, within MMJJ_RS00010 at 1.007 kb on - strand, within MMJJ_RS00010 at 1.007 kb on - strand, within MMJJ_RS00010 at 1.007 kb on - strand, within MMJJ_RS00010 at 1.007 kb on - strand, within MMJJ_RS00010 at 1.008 kb on + strand, within MMJJ_RS00010 at 1.008 kb on + strand, within MMJJ_RS00010 at 1.008 kb on + strand, within MMJJ_RS00010 at 1.008 kb on + strand, within MMJJ_RS00010 at 1.008 kb on + strand, within MMJJ_RS00010 at 1.008 kb on + strand, within MMJJ_RS00010 at 1.008 kb on + strand, within MMJJ_RS00010 at 1.055 kb on - strand, within MMJJ_RS00010 at 1.055 kb on - strand, within MMJJ_RS00010 at 1.055 kb on - strand, within MMJJ_RS00010 at 1.056 kb on + strand, within MMJJ_RS00010 at 1.056 kb on + strand, within MMJJ_RS00010 at 1.056 kb on + strand, within MMJJ_RS00010 at 1.056 kb on + strand, within MMJJ_RS00010 at 1.059 kb on - strand, within MMJJ_RS00010 at 1.059 kb on - strand, within MMJJ_RS00010 at 1.059 kb on - strand, within MMJJ_RS00010 at 1.059 kb on - strand, within MMJJ_RS00010 at 1.060 kb on + strand, within MMJJ_RS00010 at 1.060 kb on + strand, within MMJJ_RS00010 at 1.060 kb on + strand, within MMJJ_RS00010 at 1.060 kb on + strand, within MMJJ_RS00010 at 1.087 kb on + strand, within MMJJ_RS00010 at 1.117 kb on - strand, within MMJJ_RS00010 at 1.118 kb on + strand, within MMJJ_RS00010 at 1.118 kb on + strand, within MMJJ_RS00010 at 1.121 kb on - strand, within MMJJ_RS00010 at 1.197 kb on - strand at 1.198 kb on + strand at 1.262 kb on + strand at 1.262 kb on + strand at 1.265 kb on - strand at 1.265 kb on - strand at 1.265 kb on - strand at 1.266 kb on + strand at 1.267 kb on - strand at 1.268 kb on + strand at 1.268 kb on + strand at 1.268 kb on + strand at 1.271 kb on - strand at 1.271 kb on - strand at 1.272 kb on + strand at 1.272 kb on + strand at 1.291 kb on - strand at 1.303 kb on - strand at 1.304 kb on + strand at 1.324 kb on - strand at 1.366 kb on - strand at 1.369 kb on - strand at 1.369 kb on - strand at 1.369 kb on - strand at 1.369 kb on - strand at 1.369 kb on - strand at 1.370 kb on + strand at 1.370 kb on + strand at 1.370 kb on + strand at 1.370 kb on + strand at 1.370 kb on + strand at 1.399 kb on - strand at 1.404 kb on - strand at 1.406 kb on - strand at 1.406 kb on - strand at 1.406 kb on - strand at 1.406 kb on - strand at 1.406 kb on - strand at 1.406 kb on - strand at 1.407 kb on + strand at 1.407 kb on + strand at 1.407 kb on + strand at 1.407 kb on + strand at 1.407 kb on + strand at 1.408 kb on - strand at 1.409 kb on + strand at 1.409 kb on + strand at 1.428 kb on - strand at 1.479 kb on + strand at 1.511 kb on - strand at 1.512 kb on + strand at 2.090 kb on - strand, within MMJJ_RS00015 at 2.090 kb on - strand, within MMJJ_RS00015 at 2.090 kb on - strand, within MMJJ_RS00015 at 2.095 kb on - strand, within MMJJ_RS00015
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Nitrofurantoin 0.025 mM remove 55 - +1.4 55 - -0.7 56 + +1.8 56 + -3.7 56 + -1.9 57 - -1.7 66 - -1.7 69 - -3.4 70 + +1.0 88 - -1.9 88 - -0.3 93 + +1.2 93 + -1.4 98 - -0.9 98 - +0.3 99 + +3.0 99 + -0.9 103 - -1.9 122 - +3.3 143 - -1.3 143 - +0.7 143 - +2.4 144 + -0.3 144 + -2.4 144 + -3.1 168 - -3.0 168 - -0.7 168 - -1.8 168 - +2.0 169 + +0.4 169 + +0.4 169 + +2.1 169 + +0.4 170 - +2.4 170 - +1.5 170 - +0.8 170 - -0.2 171 + +1.0 171 + -0.8 171 + +1.0 171 + -2.9 171 + +2.0 171 + +3.1 171 + +3.1 171 + +1.1 172 - +1.6 172 - +0.4 222 + +1.6 232 - +2.9 256 - -0.2 344 - +3.3 355 - -3.3 355 - -0.8 355 - -4.3 355 - -1.4 355 - -1.5 355 - +2.3 356 + -2.7 356 + -0.5 356 + -4.5 356 + -3.6 357 - -1.3 358 + -2.9 358 + +0.4 358 + -4.4 367 + -1.6 371 - -2.1 371 - -1.1 372 + +1.8 372 + +1.7 372 + +1.2 377 + -2.2 377 + +0.2 377 + +1.1 386 - +1.1 386 - -3.3 386 - -0.4 386 - -2.9 386 - +0.3 387 + +1.1 387 + +1.0 387 + +1.4 387 + +0.0 387 + +1.8 398 - -0.7 399 + +0.9 399 + -3.3 402 + -3.3 402 + +2.3 403 - +3.3 403 - -0.6 404 + -1.0 405 - -1.6 406 + -0.7 420 + +1.6 461 + +0.4 482 - -2.0 497 + +0.5 566 - MMJJ_RS00010 0.16 +2.4 571 - MMJJ_RS00010 0.17 -0.9 571 - MMJJ_RS00010 0.17 -0.1 571 - MMJJ_RS00010 0.17 -0.7 615 - MMJJ_RS00010 0.23 -2.9 615 - MMJJ_RS00010 0.23 +0.5 616 + MMJJ_RS00010 0.23 -2.6 616 + MMJJ_RS00010 0.23 +2.5 616 + MMJJ_RS00010 0.23 +0.0 618 - MMJJ_RS00010 0.23 -3.8 619 + MMJJ_RS00010 0.23 -1.8 650 + MMJJ_RS00010 0.27 -0.0 728 + MMJJ_RS00010 0.38 +2.6 897 - MMJJ_RS00010 0.60 +1.2 902 + MMJJ_RS00010 0.60 +0.4 921 + MMJJ_RS00010 0.63 -1.5 921 + MMJJ_RS00010 0.63 -0.7 925 - MMJJ_RS00010 0.63 -0.3 925 - MMJJ_RS00010 0.63 -1.3 979 - MMJJ_RS00010 0.70 +0.9 1,003 - MMJJ_RS00010 0.74 -0.3 1,003 - MMJJ_RS00010 0.74 -2.1 1,004 + MMJJ_RS00010 0.74 +0.5 1,007 - MMJJ_RS00010 0.74 -4.9 1,007 - MMJJ_RS00010 0.74 +0.0 1,007 - MMJJ_RS00010 0.74 -1.2 1,007 - MMJJ_RS00010 0.74 -3.5 1,007 - MMJJ_RS00010 0.74 +0.1 1,007 - MMJJ_RS00010 0.74 -1.5 1,008 + MMJJ_RS00010 0.74 -0.7 1,008 + MMJJ_RS00010 0.74 -0.7 1,008 + MMJJ_RS00010 0.74 -0.9 1,008 + MMJJ_RS00010 0.74 -0.9 1,008 + MMJJ_RS00010 0.74 -3.2 1,008 + MMJJ_RS00010 0.74 -0.5 1,008 + MMJJ_RS00010 0.74 -1.0 1,055 - MMJJ_RS00010 0.80 +1.1 1,055 - MMJJ_RS00010 0.80 +0.3 1,055 - MMJJ_RS00010 0.80 +1.5 1,056 + MMJJ_RS00010 0.81 +2.3 1,056 + MMJJ_RS00010 0.81 +1.4 1,056 + MMJJ_RS00010 0.81 -0.9 1,056 + MMJJ_RS00010 0.81 +2.5 1,059 - MMJJ_RS00010 0.81 -0.2 1,059 - MMJJ_RS00010 0.81 -1.2 1,059 - MMJJ_RS00010 0.81 -1.2 1,059 - MMJJ_RS00010 0.81 +2.5 1,060 + MMJJ_RS00010 0.81 -4.0 1,060 + MMJJ_RS00010 0.81 +1.8 1,060 + MMJJ_RS00010 0.81 -1.9 1,060 + MMJJ_RS00010 0.81 +0.0 1,087 + MMJJ_RS00010 0.85 -2.3 1,117 - MMJJ_RS00010 0.88 +1.8 1,118 + MMJJ_RS00010 0.89 +2.4 1,118 + MMJJ_RS00010 0.89 +3.8 1,121 - MMJJ_RS00010 0.89 -3.9 1,197 - -1.1 1,198 + +0.2 1,262 + -0.4 1,262 + +0.3 1,265 - -0.2 1,265 - +0.7 1,265 - -0.9 1,266 + +1.9 1,267 - -0.6 1,268 + +0.7 1,268 + +0.9 1,268 + -0.8 1,271 - -0.1 1,271 - -2.6 1,272 + +2.0 1,272 + +1.9 1,291 - +0.6 1,303 - -2.5 1,304 + +2.1 1,324 - +0.1 1,366 - -2.9 1,369 - +2.4 1,369 - -0.8 1,369 - -3.9 1,369 - +2.9 1,369 - -1.0 1,370 + +3.1 1,370 + -3.2 1,370 + -3.7 1,370 + -1.9 1,370 + +2.7 1,399 - -0.3 1,404 - -0.9 1,406 - +0.9 1,406 - +3.5 1,406 - -2.9 1,406 - -2.6 1,406 - -2.8 1,406 - -1.0 1,407 + -2.4 1,407 + +2.9 1,407 + -0.5 1,407 + -0.6 1,407 + -3.3 1,408 - -2.9 1,409 + -0.3 1,409 + +1.3 1,428 - +0.3 1,479 + -0.3 1,511 - -2.3 1,512 + -0.7 2,090 - MMJJ_RS00015 0.28 -1.7 2,090 - MMJJ_RS00015 0.28 +0.3 2,090 - MMJJ_RS00015 0.28 -0.7 2,095 - MMJJ_RS00015 0.28 +2.3
Or see this region's nucleotide sequence