Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS09360

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,317,701	+				-0.6
1,318,227	-				-0.1
1,318,228	+				-1.0
1,318,234	+				+1.2
1,318,267	+				-1.2
1,318,294	-				-2.4
1,318,295	+				-0.7
1,318,295	+				-0.3
1,318,299	-				-2.6
1,318,299	-				+0.8
1,318,299	-				-2.8
1,318,300	+				+2.2
1,318,300	+				-1.0
1,318,300	+				-2.2
1,318,330	-				-0.6
1,318,347	-				+1.0
1,318,347	-				+0.4
1,318,348	+				-1.9
1,318,349	-				+0.7
1,318,349	-				-1.3
1,318,352	-				+1.5
1,318,352	-				+2.1
1,318,352	-				+1.1
1,318,352	-				+2.0
1,318,352	-				+1.7
1,318,353	+				+0.6
1,318,353	+				+0.3
1,318,353	+				+0.8
1,318,355	-				+0.9
1,318,414	-		MMJJ_RS09360	0.26	+1.1
1,318,415	+		MMJJ_RS09360	0.26	-0.2
1,318,418	-		MMJJ_RS09360	0.28	+0.8
1,318,418	-		MMJJ_RS09360	0.28	-2.0
1,318,419	+		MMJJ_RS09360	0.29	+0.9
1,318,425	-		MMJJ_RS09360	0.32	-1.8
1,318,425	-		MMJJ_RS09360	0.32	+0.7
1,318,425	-		MMJJ_RS09360	0.32	-0.1
1,318,426	+		MMJJ_RS09360	0.33	-3.1
1,318,426	+		MMJJ_RS09360	0.33	-1.0
1,318,426	+		MMJJ_RS09360	0.33	-1.2
1,318,426	+		MMJJ_RS09360	0.33	-1.1
1,318,426	+		MMJJ_RS09360	0.33	+3.0
1,318,426	+		MMJJ_RS09360	0.33	-0.0
1,318,435	-		MMJJ_RS09360	0.38	-2.1
1,318,435	-		MMJJ_RS09360	0.38	+1.5
1,318,435	-		MMJJ_RS09360	0.38	-1.7
1,318,435	-		MMJJ_RS09360	0.38	-2.2
1,318,435	-		MMJJ_RS09360	0.38	+2.1
1,318,435	-		MMJJ_RS09360	0.38	+3.2
1,318,435	-		MMJJ_RS09360	0.38	+0.1
1,318,435	-		MMJJ_RS09360	0.38	+0.2
1,318,436	+		MMJJ_RS09360	0.39	-2.1
1,318,436	+		MMJJ_RS09360	0.39	+0.4
1,318,436	+		MMJJ_RS09360	0.39	+1.2
1,318,437	-		MMJJ_RS09360	0.39	+0.4
1,318,437	-		MMJJ_RS09360	0.39	-0.2
1,318,437	-		MMJJ_RS09360	0.39	-3.2
1,318,437	-		MMJJ_RS09360	0.39	-0.1
1,318,437	-		MMJJ_RS09360	0.39	+0.1
1,318,438	+		MMJJ_RS09360	0.40	-0.2
1,318,441	-		MMJJ_RS09360	0.42	+2.4
1,318,441	-		MMJJ_RS09360	0.42	+1.1
1,318,441	-				+1.4
1,318,442	+		MMJJ_RS09360	0.42	-0.3
1,318,484	+		MMJJ_RS09360	0.67	-1.0
1,318,497	-		MMJJ_RS09360	0.74	+0.4
1,318,498	+		MMJJ_RS09360	0.75	-2.2
1,318,519	-		MMJJ_RS09360	0.87	-0.7
1,318,530	-				-1.8
1,318,589	-				+1.4
1,318,589	-				-0.6
1,318,590	+				+2.9
1,318,592	-				-1.6
1,318,606	+				+1.2
1,318,619	-				-3.0
1,318,624	-				+2.6
1,318,624	-				-0.0
1,318,631	+				-1.2
1,318,643	-				-2.1
1,318,652	-				-3.0
1,318,653	+				+3.7
1,318,653	+				+2.0
1,318,653	+				-1.4
1,318,675	-				-2.0
1,318,676	+				-1.4
1,318,676	+				+0.8
1,318,681	-				+0.0
1,318,682	+				+0.5
1,318,698	+				-0.2
1,318,835	-		MMJJ_RS07200	0.16	-1.3
1,318,841	+		MMJJ_RS07200	0.17	-2.0
1,318,841	+		MMJJ_RS07200	0.17	-1.5
1,318,922	-		MMJJ_RS07200	0.24	+2.2
1,319,082	-		MMJJ_RS07200	0.38	+1.5
1,319,127	-		MMJJ_RS07200	0.42	+1.4
1,319,128	+		MMJJ_RS07200	0.42	-1.5
1,319,144	-		MMJJ_RS07200	0.43	-3.0
1,319,145	+		MMJJ_RS07200	0.43	-0.9
1,319,157	+		MMJJ_RS07200	0.44	-2.4
1,319,163	+		MMJJ_RS07200	0.45	-3.6
1,319,264	+		MMJJ_RS07200	0.54	-1.4
1,319,319	+		MMJJ_RS07200	0.58	-2.3
1,319,324	-		MMJJ_RS07200	0.59	+0.9
1,319,338	-		MMJJ_RS07200	0.60	+0.3
1,319,346	-		MMJJ_RS07200	0.61	-1.3
1,319,366	-		MMJJ_RS07200	0.62	-1.3
1,319,367	+		MMJJ_RS07200	0.63	-2.3
1,319,369	-		MMJJ_RS07200	0.63	+2.6
1,319,369	-		MMJJ_RS07200	0.63	-2.7
1,319,370	+		MMJJ_RS07200	0.63	-1.4
1,319,370	+		MMJJ_RS07200	0.63	+0.6
1,319,387	-		MMJJ_RS07200	0.64	-0.1
1,319,387	-		MMJJ_RS07200	0.64	-0.0
1,319,388	+		MMJJ_RS07200	0.64	+3.1
1,319,388	+		MMJJ_RS07200	0.64	+0.2
1,319,396	+		MMJJ_RS07200	0.65	-1.4
1,319,430	-		MMJJ_RS07200	0.68	-0.1
1,319,431	+		MMJJ_RS07200	0.68	-1.2
1,319,454	-		MMJJ_RS07200	0.70	-0.9
1,319,454	-		MMJJ_RS07200	0.70	+1.0
1,319,455	+		MMJJ_RS07200	0.70	+2.8
1,319,455	+		MMJJ_RS07200	0.70	+0.7
1,319,455	+		MMJJ_RS07200	0.70	-1.6
1,319,455	+				+0.4
1,319,455	+		MMJJ_RS07200	0.70	-1.9
1,319,459	-		MMJJ_RS07200	0.71	-2.9
1,319,464	-		MMJJ_RS07200	0.71	+1.2
1,319,465	+		MMJJ_RS07200	0.71	-0.9
1,319,465	+		MMJJ_RS07200	0.71	-1.8
1,319,465	+		MMJJ_RS07200	0.71	-1.9
1,319,465	+		MMJJ_RS07200	0.71	-0.9
1,319,503	+		MMJJ_RS07200	0.74	+0.5
1,319,517	-		MMJJ_RS07200	0.76	-1.1
1,319,537	-		MMJJ_RS07200	0.77	-3.5
1,319,537	-		MMJJ_RS07200	0.77	-0.6
1,319,538	+		MMJJ_RS07200	0.77	-2.7
1,319,538	+		MMJJ_RS07200	0.77	+2.3