Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04620 and MMJJ_RS09305 are separated by 25 nucleotides MMJJ_RS09305 and MMJJ_RS04625 are separated by 266 nucleotides
MMJJ_RS04620: MMJJ_RS04620 - homocitrate synthase family protein, at 860,538 to 861,698
_RS04620
MMJJ_RS09305: MMJJ_RS09305 - hypothetical protein, at 861,724 to 861,882
_RS09305
MMJJ_RS04625: MMJJ_RS04625 - SLC13 family permease, at 862,149 to 863,489
_RS04625
Position (kb) 861
862 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 860.856 kb on + strand, within MMJJ_RS04620 at 860.897 kb on + strand, within MMJJ_RS04620 at 860.901 kb on + strand, within MMJJ_RS04620 at 861.074 kb on - strand, within MMJJ_RS04620 at 861.112 kb on - strand at 861.113 kb on + strand at 861.124 kb on - strand, within MMJJ_RS04620 at 861.668 kb on - strand at 861.697 kb on + strand at 861.697 kb on + strand at 861.701 kb on - strand at 861.723 kb on - strand at 861.724 kb on + strand at 861.735 kb on - strand at 861.736 kb on + strand at 861.746 kb on - strand, within MMJJ_RS09305 at 861.746 kb on - strand, within MMJJ_RS09305 at 861.746 kb on - strand, within MMJJ_RS09305 at 861.746 kb on - strand, within MMJJ_RS09305 at 861.757 kb on + strand, within MMJJ_RS09305 at 861.757 kb on + strand, within MMJJ_RS09305 at 861.798 kb on - strand, within MMJJ_RS09305 at 861.810 kb on - strand, within MMJJ_RS09305 at 861.811 kb on + strand, within MMJJ_RS09305 at 861.811 kb on + strand, within MMJJ_RS09305 at 861.811 kb on + strand, within MMJJ_RS09305 at 861.818 kb on - strand, within MMJJ_RS09305 at 861.824 kb on - strand, within MMJJ_RS09305 at 861.825 kb on + strand, within MMJJ_RS09305 at 861.825 kb on + strand, within MMJJ_RS09305 at 861.827 kb on - strand, within MMJJ_RS09305 at 861.846 kb on + strand, within MMJJ_RS09305 at 861.851 kb on - strand, within MMJJ_RS09305 at 861.859 kb on - strand, within MMJJ_RS09305 at 861.860 kb on + strand, within MMJJ_RS09305 at 861.872 kb on - strand at 861.876 kb on + strand at 861.881 kb on + strand at 861.939 kb on + strand at 861.939 kb on + strand at 861.955 kb on - strand at 861.956 kb on + strand at 861.964 kb on - strand at 861.964 kb on - strand at 861.964 kb on - strand at 861.964 kb on - strand at 861.964 kb on - strand at 861.964 kb on - strand at 861.964 kb on - strand at 861.964 kb on - strand at 861.964 kb on - strand at 861.965 kb on + strand at 861.965 kb on + strand at 861.965 kb on + strand at 861.965 kb on + strand at 861.965 kb on + strand at 861.968 kb on - strand at 861.968 kb on - strand at 861.968 kb on - strand at 861.968 kb on - strand at 861.968 kb on - strand at 861.969 kb on + strand at 861.969 kb on + strand at 861.996 kb on - strand at 861.996 kb on - strand at 861.997 kb on + strand at 861.997 kb on + strand at 861.997 kb on + strand at 861.997 kb on + strand at 862.000 kb on - strand at 862.000 kb on - strand at 862.000 kb on - strand at 862.000 kb on - strand at 862.001 kb on + strand at 862.001 kb on + strand at 862.001 kb on + strand at 862.042 kb on - strand at 862.042 kb on - strand at 862.042 kb on - strand at 862.042 kb on - strand at 862.042 kb on - strand at 862.042 kb on - strand at 862.043 kb on + strand at 862.043 kb on + strand at 862.049 kb on - strand at 862.053 kb on - strand at 862.053 kb on - strand at 862.053 kb on - strand at 862.053 kb on - strand at 862.053 kb on - strand at 862.053 kb on - strand at 862.053 kb on - strand at 862.053 kb on - strand at 862.053 kb on - strand at 862.053 kb on - strand at 862.053 kb on - strand at 862.053 kb on - strand at 862.053 kb on - strand at 862.054 kb on + strand at 862.054 kb on + strand at 862.054 kb on + strand at 862.054 kb on + strand at 862.054 kb on + strand at 862.054 kb on + strand at 862.054 kb on + strand at 862.054 kb on + strand at 862.054 kb on + strand at 862.054 kb on + strand at 862.054 kb on + strand at 862.054 kb on + strand at 862.054 kb on + strand at 862.054 kb on + strand at 862.055 kb on - strand at 862.055 kb on - strand at 862.055 kb on - strand at 862.055 kb on - strand at 862.055 kb on - strand at 862.055 kb on - strand at 862.055 kb on - strand at 862.055 kb on - strand at 862.055 kb on - strand at 862.055 kb on - strand at 862.055 kb on - strand at 862.055 kb on - strand at 862.055 kb on - strand at 862.055 kb on - strand at 862.055 kb on - strand at 862.056 kb on + strand at 862.056 kb on + strand at 862.056 kb on + strand at 862.056 kb on + strand at 862.056 kb on + strand at 862.058 kb on - strand at 862.059 kb on + strand at 862.062 kb on - strand at 862.150 kb on - strand at 862.189 kb on + strand at 862.235 kb on - strand at 862.260 kb on - strand at 862.261 kb on + strand at 862.261 kb on + strand at 862.293 kb on - strand, within MMJJ_RS04625 at 862.480 kb on - strand, within MMJJ_RS04625 at 862.481 kb on + strand, within MMJJ_RS04625 at 862.481 kb on + strand, within MMJJ_RS04625 at 862.508 kb on - strand, within MMJJ_RS04625 at 862.509 kb on + strand, within MMJJ_RS04625 at 862.623 kb on - strand, within MMJJ_RS04625 at 862.623 kb on - strand, within MMJJ_RS04625 at 862.623 kb on - strand, within MMJJ_RS04625 at 862.632 kb on + strand, within MMJJ_RS04625 at 862.632 kb on + strand, within MMJJ_RS04625 at 862.657 kb on + strand, within MMJJ_RS04625 at 862.668 kb on + strand, within MMJJ_RS04625 at 862.686 kb on - strand, within MMJJ_RS04625 at 862.689 kb on - strand, within MMJJ_RS04625 at 862.690 kb on + strand, within MMJJ_RS04625 at 862.700 kb on - strand, within MMJJ_RS04625 at 862.701 kb on + strand, within MMJJ_RS04625 at 862.701 kb on + strand, within MMJJ_RS04625 at 862.730 kb on - strand, within MMJJ_RS04625 at 862.730 kb on - strand, within MMJJ_RS04625 at 862.748 kb on - strand, within MMJJ_RS04625 at 862.748 kb on - strand, within MMJJ_RS04625 at 862.791 kb on - strand, within MMJJ_RS04625 at 862.817 kb on + strand, within MMJJ_RS04625 at 862.832 kb on - strand, within MMJJ_RS04625 at 862.836 kb on - strand, within MMJJ_RS04625 at 862.836 kb on - strand, within MMJJ_RS04625 at 862.836 kb on - strand, within MMJJ_RS04625 at 862.837 kb on + strand, within MMJJ_RS04625 at 862.837 kb on + strand, within MMJJ_RS04625 at 862.838 kb on - strand, within MMJJ_RS04625 at 862.838 kb on - strand, within MMJJ_RS04625 at 862.839 kb on + strand, within MMJJ_RS04625 at 862.839 kb on + strand, within MMJJ_RS04625
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 860,856 + MMJJ_RS04620 0.27 +1.4 860,897 + MMJJ_RS04620 0.31 +1.4 860,901 + MMJJ_RS04620 0.31 +1.7 861,074 - MMJJ_RS04620 0.46 -0.6 861,112 - +1.4 861,113 + +0.4 861,124 - MMJJ_RS04620 0.50 +1.4 861,668 - -1.9 861,697 + +1.4 861,697 + +1.4 861,701 - +5.4 861,723 - -3.9 861,724 + -0.9 861,735 - -1.5 861,736 + -3.4 861,746 - MMJJ_RS09305 0.14 +0.4 861,746 - MMJJ_RS09305 0.14 +2.7 861,746 - MMJJ_RS09305 0.14 +0.9 861,746 - MMJJ_RS09305 0.14 +1.9 861,757 + MMJJ_RS09305 0.21 +0.2 861,757 + MMJJ_RS09305 0.21 +0.5 861,798 - MMJJ_RS09305 0.47 -1.9 861,810 - MMJJ_RS09305 0.54 -2.2 861,811 + MMJJ_RS09305 0.55 -0.9 861,811 + MMJJ_RS09305 0.55 -0.8 861,811 + MMJJ_RS09305 0.55 -1.1 861,818 - MMJJ_RS09305 0.59 -3.4 861,824 - MMJJ_RS09305 0.63 +0.5 861,825 + MMJJ_RS09305 0.64 -1.9 861,825 + MMJJ_RS09305 0.64 -1.2 861,827 - MMJJ_RS09305 0.65 -4.3 861,846 + MMJJ_RS09305 0.77 -3.1 861,851 - MMJJ_RS09305 0.80 -1.6 861,859 - MMJJ_RS09305 0.85 -2.1 861,860 + MMJJ_RS09305 0.86 -2.6 861,872 - -0.6 861,876 + +0.4 861,881 + +0.1 861,939 + -1.7 861,939 + -1.5 861,955 - +0.4 861,956 + +0.1 861,964 - +2.3 861,964 - -3.9 861,964 - -3.7 861,964 - +0.0 861,964 - +2.3 861,964 - -1.8 861,964 - -1.8 861,964 - -0.9 861,964 - -2.1 861,965 + +2.0 861,965 + -1.6 861,965 + -1.1 861,965 + -0.8 861,965 + -1.8 861,968 - +1.4 861,968 - +0.9 861,968 - -0.8 861,968 - -1.3 861,968 - +2.0 861,969 + +1.8 861,969 + -0.2 861,996 - +0.5 861,996 - -2.2 861,997 + -0.7 861,997 + +2.1 861,997 + +0.4 861,997 + -0.9 862,000 - -1.6 862,000 - +0.6 862,000 - -0.6 862,000 - +0.5 862,001 + +2.1 862,001 + +1.2 862,001 + -3.2 862,042 - +1.9 862,042 - -0.7 862,042 - +0.3 862,042 - -0.9 862,042 - +2.0 862,042 - -0.4 862,043 + +2.0 862,043 + -1.9 862,049 - -2.2 862,053 - +0.8 862,053 - +2.2 862,053 - -2.9 862,053 - -1.6 862,053 - +0.7 862,053 - +0.1 862,053 - +4.4 862,053 - +0.0 862,053 - -0.5 862,053 - -2.3 862,053 - -0.5 862,053 - -2.9 862,053 - -0.6 862,054 + -2.3 862,054 + +0.5 862,054 + -1.0 862,054 + +0.6 862,054 + -1.0 862,054 + -4.1 862,054 + -0.9 862,054 + +2.0 862,054 + -1.7 862,054 + +1.4 862,054 + -2.7 862,054 + -0.9 862,054 + -0.8 862,054 + -1.8 862,055 - +3.7 862,055 - -3.5 862,055 - -0.1 862,055 - +3.0 862,055 - -2.0 862,055 - -1.4 862,055 - -1.4 862,055 - +1.4 862,055 - +0.4 862,055 - -1.8 862,055 - +0.1 862,055 - -1.5 862,055 - -2.4 862,055 - -0.2 862,055 - -0.2 862,056 + +3.0 862,056 + +0.6 862,056 + -0.6 862,056 + +2.2 862,056 + -0.9 862,058 - -2.3 862,059 + +0.6 862,062 - -0.4 862,150 - +0.8 862,189 + +2.8 862,235 - +1.0 862,260 - +1.8 862,261 + +0.5 862,261 + -2.8 862,293 - MMJJ_RS04625 0.11 -0.7 862,480 - MMJJ_RS04625 0.25 +1.3 862,481 + MMJJ_RS04625 0.25 +0.3 862,481 + MMJJ_RS04625 0.25 +0.2 862,508 - MMJJ_RS04625 0.27 +0.9 862,509 + MMJJ_RS04625 0.27 -2.9 862,623 - MMJJ_RS04625 0.35 -1.4 862,623 - MMJJ_RS04625 0.35 +0.9 862,623 - MMJJ_RS04625 0.35 -0.4 862,632 + MMJJ_RS04625 0.36 +1.5 862,632 + MMJJ_RS04625 0.36 -1.6 862,657 + MMJJ_RS04625 0.38 +1.4 862,668 + MMJJ_RS04625 0.39 -0.1 862,686 - MMJJ_RS04625 0.40 +0.2 862,689 - MMJJ_RS04625 0.40 +2.6 862,690 + MMJJ_RS04625 0.40 +1.3 862,700 - MMJJ_RS04625 0.41 -1.4 862,701 + MMJJ_RS04625 0.41 +1.0 862,701 + MMJJ_RS04625 0.41 +1.8 862,730 - MMJJ_RS04625 0.43 -0.9 862,730 - MMJJ_RS04625 0.43 -1.2 862,748 - MMJJ_RS04625 0.45 +1.9 862,748 - MMJJ_RS04625 0.45 +0.1 862,791 - MMJJ_RS04625 0.48 -2.4 862,817 + MMJJ_RS04625 0.50 -0.9 862,832 - MMJJ_RS04625 0.51 +1.0 862,836 - MMJJ_RS04625 0.51 +0.8 862,836 - MMJJ_RS04625 0.51 +0.8 862,836 - MMJJ_RS04625 0.51 -1.6 862,837 + MMJJ_RS04625 0.51 -0.6 862,837 + MMJJ_RS04625 0.51 -0.2 862,838 - MMJJ_RS04625 0.51 -0.2 862,838 - MMJJ_RS04625 0.51 -2.9 862,839 + MMJJ_RS04625 0.51 +1.7 862,839 + MMJJ_RS04625 0.51 -2.2
Or see this region's nucleotide sequence