Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS09225

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,710,375	+		MMJJ_RS09215	0.85	-0.9
1,710,379	+		MMJJ_RS09215	0.85	+2.8
1,710,385	-		MMJJ_RS09215	0.86	-2.1
1,710,385	-		MMJJ_RS09215	0.86	-2.2
1,710,385	-		MMJJ_RS09215	0.86	+1.7
1,710,545	+				-2.7
1,710,682	-				-2.2
1,710,689	-				+1.0
1,710,707	-				-0.7
1,710,708	+				+0.6
1,710,736	+				-0.6
1,710,738	+				+2.3
1,710,758	-				-0.8
1,710,758	-				+0.3
1,710,761	-				+0.4
1,710,761	-				+0.5
1,710,762	+				+2.5
1,710,788	+				-1.3
1,710,820	+		MMJJ_RS09220	0.10	+2.4
1,710,867	-		MMJJ_RS09220	0.23	-1.1
1,710,867	-		MMJJ_RS09220	0.23	+0.0
1,710,868	+		MMJJ_RS09220	0.24	-1.5
1,710,902	-		MMJJ_RS09220	0.33	+0.9
1,710,902	-		MMJJ_RS09220	0.33	+2.4
1,710,925	+		MMJJ_RS09220	0.39	-1.3
1,710,987	+		MMJJ_RS09220	0.57	-0.2
1,710,987	+		MMJJ_RS09220	0.57	+1.9
1,710,994	+		MMJJ_RS09220	0.59	+1.2
1,710,994	+		MMJJ_RS09220	0.59	+0.7
1,710,999	+		MMJJ_RS09220	0.60	+1.0
1,710,999	+		MMJJ_RS09220	0.60	+2.4
1,711,047	+		MMJJ_RS09220	0.74	+2.6
1,711,060	+		MMJJ_RS09220	0.77	-2.2
1,711,060	+		MMJJ_RS09220	0.77	+4.5
1,711,073	-		MMJJ_RS09220	0.81	+0.3
1,711,081	-		MMJJ_RS09220	0.83	+0.0
1,711,081	-		MMJJ_RS09220	0.83	-1.9
1,711,084	+		MMJJ_RS09220	0.84	-0.4
1,711,084	+		MMJJ_RS09220	0.84	+1.5
1,711,084	+		MMJJ_RS09220	0.84	+2.1
1,711,084	+		MMJJ_RS09220	0.84	+5.3
1,711,084	+		MMJJ_RS09220	0.84	+1.2
1,711,087	-		MMJJ_RS09220	0.85	-1.0
1,711,087	-		MMJJ_RS09220	0.85	-1.6
1,711,088	+		MMJJ_RS09220	0.85	-0.8
1,711,088	+		MMJJ_RS09220	0.85	-1.3
1,711,090	-		MMJJ_RS09220	0.86	-2.9
1,711,090	-		MMJJ_RS09220	0.86	+0.4
1,711,091	+		MMJJ_RS09220	0.86	-1.9
1,711,095	-				-0.4
1,711,095	-		MMJJ_RS09220	0.87	-1.8
1,711,095	-		MMJJ_RS09220	0.87	+1.4
1,711,096	+		MMJJ_RS09220	0.87	+2.6
1,711,109	+				-1.5
1,711,111	+				+1.2
1,711,168	+				-1.1
1,711,193	+				-2.6
1,711,196	-				-0.1
1,711,220	-				+0.4
1,711,221	+				-0.8
1,711,251	+				-0.6
1,711,297	+				+2.1
1,711,297	+				+0.2
1,711,321	-				-0.6
1,711,344	-				+1.2
1,711,345	+				+2.7
1,711,352	+				+1.6
1,711,352	+				-1.6
1,711,357	+				-1.1
1,711,372	+				+1.6
1,711,486	-		MMJJ_RS09225	0.43	+2.3
1,711,488	-		MMJJ_RS09225	0.44	+1.6
1,711,488	-		MMJJ_RS09225	0.44	+1.0
1,711,488	-		MMJJ_RS09225	0.44	+2.7
1,711,488	-		MMJJ_RS09225	0.44	-2.0
1,711,488	-		MMJJ_RS09225	0.44	-1.1
1,711,488	-		MMJJ_RS09225	0.44	+0.6
1,711,488	-		MMJJ_RS09225	0.44	+3.7
1,711,488	-		MMJJ_RS09225	0.44	+0.6
1,711,489	+		MMJJ_RS09225	0.44	+0.3
1,711,489	+		MMJJ_RS09225	0.44	-0.0
1,711,497	+		MMJJ_RS09225	0.47	+3.4
1,711,521	+		MMJJ_RS09225	0.56	-2.0
1,711,521	+		MMJJ_RS09225	0.56	-0.6
1,711,521	+		MMJJ_RS09225	0.56	-0.7
1,711,521	+		MMJJ_RS09225	0.56	+3.6
1,711,588	-		MMJJ_RS09225	0.82	+3.4
1,711,589	+		MMJJ_RS09225	0.82	+0.2
1,711,634	+				+0.9
1,711,634	+				+4.8
1,711,663	-				-1.4
1,711,669	+				-2.2
1,711,679	-				-2.6
1,711,679	-				+0.8
1,711,680	+				-1.8
1,711,701	-				-0.7
1,711,701	-				+1.3
1,711,702	+				+0.2
1,711,706	+				+2.2
1,711,778	-				+1.4
1,711,789	-				+2.0
1,711,790	+				-0.4
1,711,790	+				+1.4
1,711,875	-		MMJJ_RS09230	0.19	+1.5
1,711,876	+		MMJJ_RS09230	0.19	+2.6
1,711,876	+		MMJJ_RS09230	0.19	+1.5
1,711,945	-		MMJJ_RS09230	0.35	-0.5
1,711,985	-		MMJJ_RS09230	0.45	-1.2
1,712,028	-		MMJJ_RS09230	0.55	+2.6
1,712,042	-		MMJJ_RS09230	0.58	+1.3
1,712,094	+		MMJJ_RS09230	0.70	-2.8
1,712,094	+		MMJJ_RS09230	0.70	+1.6
1,712,229	-				-0.4
1,712,230	+				+0.2
1,712,259	-				+1.7
1,712,260	+				+2.5
1,712,260	+				+0.8
1,712,260	+				-0.9
1,712,329	-		MMJJ_RS09235	0.16	+1.5
1,712,408	+		MMJJ_RS09235	0.56	+3.3
1,712,409	-		MMJJ_RS09235	0.56	-2.8
1,712,471	-		MMJJ_RS09235	0.87	+1.2
1,712,472	+		MMJJ_RS09235	0.88	-0.2
1,712,536	-				+0.9
1,712,537	+				-1.0
1,712,623	+				-0.9
1,712,623	+				-2.7