Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS09095

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,680,667	-				-1.9
1,680,691	+				+0.2
1,680,825	+				-2.5
1,680,827	-				-3.7
1,680,829	-				-2.8
1,680,856	-				+0.6
1,680,857	+				+3.0
1,680,902	+				+0.9
1,680,903	-				-1.5
1,680,907	-				+1.5
1,680,908	+				-1.8
1,680,922	+				+2.7
1,680,922	+				-1.6
1,680,926	-				+1.5
1,680,927	+				-0.4
1,680,927	+				+1.2
1,680,927	+				-2.2
1,680,927	+				+0.6
1,680,930	-				-2.2
1,680,930	-				+4.1
1,680,930	-				-2.1
1,680,931	+				+1.1
1,680,940	-				-0.6
1,680,941	+				+1.0
1,680,945	+				-1.4
1,680,945	+				-3.3
1,680,945	+				-0.0
1,680,959	+				+1.9
1,681,026	-		MMJJ_RS09090	0.12	-1.6
1,681,052	+		MMJJ_RS09090	0.16	-0.8
1,681,052	+		MMJJ_RS09090	0.16	+0.9
1,681,087	-		MMJJ_RS09090	0.22	-2.4
1,681,236	+		MMJJ_RS09090	0.47	+0.4
1,681,253	+		MMJJ_RS09090	0.50	+1.8
1,681,292	+		MMJJ_RS09090	0.56	-3.6
1,681,292	+		MMJJ_RS09090	0.56	-0.5
1,681,296	-		MMJJ_RS09090	0.57	+2.7
1,681,297	+		MMJJ_RS09090	0.57	-1.1
1,681,297	+		MMJJ_RS09090	0.57	-0.1
1,681,297	+		MMJJ_RS09090	0.57	-0.2
1,681,297	+		MMJJ_RS09090	0.57	-0.9
1,681,324	-		MMJJ_RS09090	0.62	-2.8
1,681,325	+		MMJJ_RS09090	0.62	-2.4
1,681,325	+		MMJJ_RS09090	0.62	-2.3
1,681,334	+		MMJJ_RS09090	0.63	-0.1
1,681,356	+		MMJJ_RS09090	0.67	+0.2
1,681,356	+		MMJJ_RS09090	0.67	-0.5
1,681,377	-		MMJJ_RS09090	0.70	-0.4
1,681,502	-				+1.2
1,681,502	-				-3.2
1,681,502	-				+0.4
1,681,502	-				-1.2
1,681,502	-				-3.8
1,681,503	+				-0.4
1,681,516	-				+0.5
1,681,516	-				-1.0
1,681,516	-				-1.1
1,681,517	+				+0.6
1,681,578	-				+1.9
1,681,602	-				-1.7
1,681,603	+				+2.6
1,681,627	+				+1.1
1,681,695	+				-0.5
1,681,752	-				-1.8
1,681,854	+		MMJJ_RS09095	0.18	-1.4
1,681,871	-		MMJJ_RS09095	0.20	+1.2
1,681,925	-		MMJJ_RS09095	0.25	-2.1
1,682,094	+		MMJJ_RS09095	0.39	-2.5
1,682,120	-		MMJJ_RS09095	0.41	-3.1
1,682,121	+		MMJJ_RS09095	0.41	-2.2
1,682,125	-		MMJJ_RS09095	0.42	-1.1
1,682,319	-		MMJJ_RS09095	0.58	-0.8
1,682,320	+		MMJJ_RS09095	0.58	-2.8
1,682,335	-		MMJJ_RS09095	0.60	-0.8
1,682,336	+		MMJJ_RS09095	0.60	-3.4
1,682,346	-		MMJJ_RS09095	0.61	-1.9
1,682,351	-		MMJJ_RS09095	0.61	-2.9
1,682,352	+		MMJJ_RS09095	0.61	-1.4
1,682,372	-		MMJJ_RS09095	0.63	-2.7
1,682,422	+		MMJJ_RS09095	0.67	-1.6
1,682,510	+		MMJJ_RS09095	0.75	-1.6
1,682,552	-		MMJJ_RS09095	0.78	-1.4
1,682,565	+		MMJJ_RS09095	0.79	-1.7
1,682,565	+		MMJJ_RS09095	0.79	-0.9
1,682,565	+		MMJJ_RS09095	0.79	-3.3
1,682,568	+		MMJJ_RS09095	0.80	-1.1
1,682,571	-		MMJJ_RS09095	0.80	-3.5
1,682,595	-		MMJJ_RS09095	0.82	-0.8
1,682,595	-		MMJJ_RS09095	0.82	-3.4
1,682,596	+		MMJJ_RS09095	0.82	-1.6
1,682,674	+		MMJJ_RS09095	0.89	-2.6
1,682,682	-		MMJJ_RS09095	0.89	-2.9
1,682,694	-				-2.2
1,682,778	+				-0.8
1,682,823	-				-0.8
1,682,888	-				-0.8
1,682,890	-				-0.4
1,682,890	-				-0.4
1,682,891	+				-0.7
1,682,905	+				-2.5
1,682,928	-				-1.6
1,682,967	-		MMJJ_RS09100	0.11	+0.2
1,682,968	+		MMJJ_RS09100	0.11	-1.9
1,682,980	+		MMJJ_RS09100	0.12	-0.9
1,683,024	-		MMJJ_RS09100	0.14	-2.5
1,683,086	-		MMJJ_RS09100	0.18	-1.1
1,683,100	-		MMJJ_RS09100	0.19	-0.4
1,683,128	-		MMJJ_RS09100	0.21	-1.9
1,683,167	-		MMJJ_RS09100	0.23	+0.6
1,683,168	+		MMJJ_RS09100	0.24	-2.1
1,683,190	-		MMJJ_RS09100	0.25	+1.7
1,683,204	+		MMJJ_RS09100	0.26	-1.4
1,683,215	-		MMJJ_RS09100	0.27	-0.9
1,683,218	-		MMJJ_RS09100	0.27	+0.2
1,683,218	-		MMJJ_RS09100	0.27	-1.0
1,683,220	-		MMJJ_RS09100	0.27	+1.7
1,683,228	-		MMJJ_RS09100	0.27	-2.9
1,683,369	-		MMJJ_RS09100	0.36	-1.9
1,683,369	-		MMJJ_RS09100	0.36	-1.0
1,683,372	-		MMJJ_RS09100	0.37	-2.2
1,683,398	-		MMJJ_RS09100	0.38	-2.2
1,683,479	-		MMJJ_RS09100	0.43	-1.8
1,683,480	+		MMJJ_RS09100	0.43	-3.3
1,683,483	-		MMJJ_RS09100	0.44	-2.4
1,683,498	-		MMJJ_RS09100	0.45	-1.8
1,683,537	-		MMJJ_RS09100	0.47	+0.2
1,683,541	+		MMJJ_RS09100	0.47	-1.1
1,683,547	+		MMJJ_RS09100	0.48	+2.8
1,683,604	-		MMJJ_RS09100	0.51	-0.2
1,683,707	-		MMJJ_RS09100	0.58	-1.4
1,683,760	+		MMJJ_RS09100	0.61	-1.6
1,683,791	-		MMJJ_RS09100	0.63	-1.8