Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS09090

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,679,957	+		MMJJ_RS09085	0.59	-2.1
1,679,958	-		MMJJ_RS09085	0.59	-2.5
1,679,959	+		MMJJ_RS09085	0.59	-0.0
1,679,959	+		MMJJ_RS09085	0.59	-3.6
1,679,959	+		MMJJ_RS09085	0.59	-1.8
1,680,168	-		MMJJ_RS09085	0.68	+0.0
1,680,168	-		MMJJ_RS09085	0.68	-2.5
1,680,168	-		MMJJ_RS09085	0.68	-1.8
1,680,168	-		MMJJ_RS09085	0.68	-2.7
1,680,168	-		MMJJ_RS09085	0.68	-3.3
1,680,168	-		MMJJ_RS09085	0.68	-3.7
1,680,175	-		MMJJ_RS09085	0.69	-2.0
1,680,175	-		MMJJ_RS09085	0.69	-3.2
1,680,204	+		MMJJ_RS09085	0.70	-1.2
1,680,259	+		MMJJ_RS09085	0.73	-0.8
1,680,263	+		MMJJ_RS09085	0.73	-0.8
1,680,270	+		MMJJ_RS09085	0.73	-1.6
1,680,273	-		MMJJ_RS09085	0.73	-0.3
1,680,274	+		MMJJ_RS09085	0.73	-1.6
1,680,274	+		MMJJ_RS09085	0.73	-0.4
1,680,278	-		MMJJ_RS09085	0.74	-0.4
1,680,297	+		MMJJ_RS09085	0.74	-2.6
1,680,320	-		MMJJ_RS09085	0.76	-2.0
1,680,399	+		MMJJ_RS09085	0.79	-2.1
1,680,446	+		MMJJ_RS09085	0.81	-2.8
1,680,459	-		MMJJ_RS09085	0.82	-1.9
1,680,472	+		MMJJ_RS09085	0.83	-1.1
1,680,550	+		MMJJ_RS09085	0.86	-3.0
1,680,579	+		MMJJ_RS09085	0.88	+0.8
1,680,607	+		MMJJ_RS09085	0.89	+2.4
1,680,607	+		MMJJ_RS09085	0.89	-0.8
1,680,610	-		MMJJ_RS09085	0.89	-0.8
1,680,667	-				-1.9
1,680,691	+				+0.2
1,680,825	+				-2.5
1,680,827	-				-3.7
1,680,829	-				-2.8
1,680,856	-				+0.6
1,680,857	+				+3.0
1,680,902	+				+0.9
1,680,903	-				-1.5
1,680,907	-				+1.5
1,680,908	+				-1.8
1,680,922	+				+2.7
1,680,922	+				-1.6
1,680,926	-				+1.5
1,680,927	+				-0.4
1,680,927	+				+1.2
1,680,927	+				-2.2
1,680,927	+				+0.6
1,680,930	-				-2.2
1,680,930	-				+4.1
1,680,930	-				-2.1
1,680,931	+				+1.1
1,680,940	-				-0.6
1,680,941	+				+1.0
1,680,945	+				-1.4
1,680,945	+				-3.3
1,680,945	+				-0.0
1,680,959	+				+1.9
1,681,026	-		MMJJ_RS09090	0.12	-1.6
1,681,052	+		MMJJ_RS09090	0.16	-0.8
1,681,052	+		MMJJ_RS09090	0.16	+0.9
1,681,087	-		MMJJ_RS09090	0.22	-2.4
1,681,236	+		MMJJ_RS09090	0.47	+0.4
1,681,253	+		MMJJ_RS09090	0.50	+1.8
1,681,292	+		MMJJ_RS09090	0.56	-3.6
1,681,292	+		MMJJ_RS09090	0.56	-0.5
1,681,296	-		MMJJ_RS09090	0.57	+2.7
1,681,297	+		MMJJ_RS09090	0.57	-1.1
1,681,297	+		MMJJ_RS09090	0.57	-0.1
1,681,297	+		MMJJ_RS09090	0.57	-0.2
1,681,297	+		MMJJ_RS09090	0.57	-0.9
1,681,324	-		MMJJ_RS09090	0.62	-2.8
1,681,325	+		MMJJ_RS09090	0.62	-2.4
1,681,325	+		MMJJ_RS09090	0.62	-2.3
1,681,334	+		MMJJ_RS09090	0.63	-0.1
1,681,356	+		MMJJ_RS09090	0.67	+0.2
1,681,356	+		MMJJ_RS09090	0.67	-0.5
1,681,377	-		MMJJ_RS09090	0.70	-0.4
1,681,502	-				+1.2
1,681,502	-				-3.2
1,681,502	-				+0.4
1,681,502	-				-1.2
1,681,502	-				-3.8
1,681,503	+				-0.4
1,681,516	-				+0.5
1,681,516	-				-1.0
1,681,516	-				-1.1
1,681,517	+				+0.6
1,681,578	-				+1.9
1,681,602	-				-1.7
1,681,603	+				+2.6
1,681,627	+				+1.1
1,681,695	+				-0.5
1,681,752	-				-1.8
1,681,854	+		MMJJ_RS09095	0.18	-1.4
1,681,871	-		MMJJ_RS09095	0.20	+1.2
1,681,925	-		MMJJ_RS09095	0.25	-2.1
1,682,094	+		MMJJ_RS09095	0.39	-2.5
1,682,120	-		MMJJ_RS09095	0.41	-3.1
1,682,121	+		MMJJ_RS09095	0.41	-2.2
1,682,125	-		MMJJ_RS09095	0.42	-1.1
1,682,319	-		MMJJ_RS09095	0.58	-0.8
1,682,320	+		MMJJ_RS09095	0.58	-2.8
1,682,335	-		MMJJ_RS09095	0.60	-0.8
1,682,336	+		MMJJ_RS09095	0.60	-3.4
1,682,346	-		MMJJ_RS09095	0.61	-1.9
1,682,351	-		MMJJ_RS09095	0.61	-2.9
1,682,352	+		MMJJ_RS09095	0.61	-1.4
1,682,372	-		MMJJ_RS09095	0.63	-2.7
1,682,422	+		MMJJ_RS09095	0.67	-1.6
1,682,510	+		MMJJ_RS09095	0.75	-1.6
1,682,552	-		MMJJ_RS09095	0.78	-1.4