Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS09085

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,677,853	-				-1.4
1,678,046	-				+0.5
1,678,047	+				-0.9
1,678,051	-				+1.2
1,678,060	-				+0.2
1,678,120	+				+2.4
1,678,126	-				+1.7
1,678,130	-				-1.4
1,678,136	+				+0.2
1,678,144	-				-2.5
1,678,145	+				-0.8
1,678,151	-				+0.2
1,678,165	+				-1.8
1,678,821	-				+1.2
1,678,906	+				-3.2
1,678,908	-				+0.3
1,678,908	-				-1.5
1,678,908	-				-2.5
1,678,908	-				-0.4
1,678,908	-				+2.5
1,678,909	+				-2.0
1,678,909	+				-1.8
1,678,910	-				-0.4
1,678,911	+				-4.1
1,678,911	+				-1.1
1,678,911	+				-0.1
1,678,919	+				+0.8
1,678,928	-		MMJJ_RS09085	0.10	-0.8
1,678,929	+		MMJJ_RS09085	0.10	-1.9
1,678,933	+		MMJJ_RS09085	0.11	-0.9
1,678,959	-		MMJJ_RS09085	0.12	-1.5
1,678,960	+		MMJJ_RS09085	0.12	-1.8
1,678,960	+		MMJJ_RS09085	0.12	-2.1
1,679,153	+		MMJJ_RS09085	0.21	-2.2
1,679,169	+		MMJJ_RS09085	0.22	-2.5
1,679,194	-		MMJJ_RS09085	0.23	-2.3
1,679,232	+		MMJJ_RS09085	0.25	-2.4
1,679,236	-		MMJJ_RS09085	0.25	-2.7
1,679,236	-		MMJJ_RS09085	0.25	-0.4
1,679,246	-		MMJJ_RS09085	0.25	-2.6
1,679,246	-		MMJJ_RS09085	0.25	+0.2
1,679,247	+		MMJJ_RS09085	0.25	-2.7
1,679,247	+		MMJJ_RS09085	0.25	-1.4
1,679,250	-		MMJJ_RS09085	0.25	-1.7
1,679,250	-		MMJJ_RS09085	0.25	+0.2
1,679,251	+		MMJJ_RS09085	0.25	-1.5
1,679,320	-		MMJJ_RS09085	0.29	-1.4
1,679,321	+		MMJJ_RS09085	0.29	-1.6
1,679,441	+		MMJJ_RS09085	0.34	-0.2
1,679,441	+				+1.2
1,679,441	+		MMJJ_RS09085	0.34	-0.6
1,679,441	+		MMJJ_RS09085	0.34	-2.4
1,679,449	+		MMJJ_RS09085	0.35	-2.2
1,679,482	+		MMJJ_RS09085	0.36	-1.9
1,679,502	+		MMJJ_RS09085	0.37	-1.1
1,679,512	+		MMJJ_RS09085	0.38	-0.8
1,679,584	-		MMJJ_RS09085	0.41	-1.4
1,679,797	+		MMJJ_RS09085	0.51	-0.8
1,679,890	-		MMJJ_RS09085	0.55	-1.8
1,679,891	+		MMJJ_RS09085	0.55	-0.2
1,679,957	+		MMJJ_RS09085	0.59	-2.1
1,679,958	-		MMJJ_RS09085	0.59	-2.5
1,679,959	+		MMJJ_RS09085	0.59	-0.0
1,679,959	+		MMJJ_RS09085	0.59	-3.6
1,679,959	+		MMJJ_RS09085	0.59	-1.8
1,680,168	-		MMJJ_RS09085	0.68	+0.0
1,680,168	-		MMJJ_RS09085	0.68	-2.5
1,680,168	-		MMJJ_RS09085	0.68	-1.8
1,680,168	-		MMJJ_RS09085	0.68	-2.7
1,680,168	-		MMJJ_RS09085	0.68	-3.3
1,680,168	-		MMJJ_RS09085	0.68	-3.7
1,680,175	-		MMJJ_RS09085	0.69	-2.0
1,680,175	-		MMJJ_RS09085	0.69	-3.2
1,680,204	+		MMJJ_RS09085	0.70	-1.2
1,680,259	+		MMJJ_RS09085	0.73	-0.8
1,680,263	+		MMJJ_RS09085	0.73	-0.8
1,680,270	+		MMJJ_RS09085	0.73	-1.6
1,680,273	-		MMJJ_RS09085	0.73	-0.3
1,680,274	+		MMJJ_RS09085	0.73	-1.6
1,680,274	+		MMJJ_RS09085	0.73	-0.4
1,680,278	-		MMJJ_RS09085	0.74	-0.4
1,680,297	+		MMJJ_RS09085	0.74	-2.6
1,680,320	-		MMJJ_RS09085	0.76	-2.0
1,680,399	+		MMJJ_RS09085	0.79	-2.1
1,680,446	+		MMJJ_RS09085	0.81	-2.8
1,680,459	-		MMJJ_RS09085	0.82	-1.9
1,680,472	+		MMJJ_RS09085	0.83	-1.1
1,680,550	+		MMJJ_RS09085	0.86	-3.0
1,680,579	+		MMJJ_RS09085	0.88	+0.8
1,680,607	+		MMJJ_RS09085	0.89	+2.4
1,680,607	+		MMJJ_RS09085	0.89	-0.8
1,680,610	-		MMJJ_RS09085	0.89	-0.8
1,680,667	-				-1.9
1,680,691	+				+0.2
1,680,825	+				-2.5
1,680,827	-				-3.7
1,680,829	-				-2.8
1,680,856	-				+0.6
1,680,857	+				+3.0
1,680,902	+				+0.9
1,680,903	-				-1.5
1,680,907	-				+1.5
1,680,908	+				-1.8
1,680,922	+				+2.7
1,680,922	+				-1.6
1,680,926	-				+1.5
1,680,927	+				-0.4
1,680,927	+				+1.2
1,680,927	+				-2.2
1,680,927	+				+0.6
1,680,930	-				-2.2
1,680,930	-				+4.1
1,680,930	-				-2.1
1,680,931	+				+1.1
1,680,940	-				-0.6
1,680,941	+				+1.0
1,680,945	+				-1.4
1,680,945	+				-3.3
1,680,945	+				-0.0
1,680,959	+				+1.9
1,681,026	-		MMJJ_RS09090	0.12	-1.6
1,681,052	+		MMJJ_RS09090	0.16	-0.8
1,681,052	+		MMJJ_RS09090	0.16	+0.9
1,681,087	-		MMJJ_RS09090	0.22	-2.4
1,681,236	+		MMJJ_RS09090	0.47	+0.4
1,681,253	+		MMJJ_RS09090	0.50	+1.8
1,681,292	+		MMJJ_RS09090	0.56	-3.6
1,681,292	+		MMJJ_RS09090	0.56	-0.5
1,681,296	-		MMJJ_RS09090	0.57	+2.7
1,681,297	+		MMJJ_RS09090	0.57	-1.1
1,681,297	+		MMJJ_RS09090	0.57	-0.1
1,681,297	+		MMJJ_RS09090	0.57	-0.2
1,681,297	+		MMJJ_RS09090	0.57	-0.9
1,681,324	-		MMJJ_RS09090	0.62	-2.8
1,681,325	+		MMJJ_RS09090	0.62	-2.4
1,681,325	+		MMJJ_RS09090	0.62	-2.3
1,681,334	+		MMJJ_RS09090	0.63	-0.1
1,681,356	+		MMJJ_RS09090	0.67	+0.2
1,681,356	+		MMJJ_RS09090	0.67	-0.5
1,681,377	-		MMJJ_RS09090	0.70	-0.4
1,681,502	-				+1.2
1,681,502	-				-3.2
1,681,502	-				+0.4
1,681,502	-				-1.2
1,681,502	-				-3.8
1,681,503	+				-0.4
1,681,516	-				+0.5
1,681,516	-				-1.0
1,681,516	-				-1.1
1,681,517	+				+0.6
1,681,578	-				+1.9
1,681,602	-				-1.7
1,681,603	+				+2.6
1,681,627	+				+1.1
1,681,695	+				-0.5
1,681,752	-				-1.8