Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS09060

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,673,723	+		MMJJ_RS09055	0.72	+0.2
1,673,917	-		MMJJ_RS09055	0.81	+0.5
1,673,917	-		MMJJ_RS09055	0.81	-0.8
1,673,938	-		MMJJ_RS09055	0.82	-1.8
1,674,022	+		MMJJ_RS09055	0.86	-0.4
1,674,051	-		MMJJ_RS09055	0.88	-1.9
1,674,113	+				-0.4
1,674,117	+				-3.2
1,674,117	+				-1.0
1,674,173	+				+1.2
1,674,346	-				-1.2
1,674,346	-				-1.3
1,674,347	+				+1.2
1,674,347	+				-0.2
1,674,350	-				-1.4
1,674,350	-				+1.5
1,674,355	+				-1.8
1,674,355	+				-2.4
1,674,361	-				-2.1
1,674,361	-				-0.8
1,674,361	-				+0.4
1,674,361	-				-1.0
1,674,362	+				-1.6
1,674,362	+				-2.3
1,674,370	-				-0.1
1,674,370	-				+0.9
1,674,379	+				+1.3
1,674,381	-				-0.0
1,674,381	-				+1.4
1,674,389	-				+1.1
1,674,389	-				+4.1
1,674,389	-				+0.1
1,674,390	+				-1.5
1,674,390	+				+2.7
1,674,390	+				+3.9
1,674,401	-				-0.8
1,674,410	+				+2.1
1,674,417	-				-1.1
1,674,418	+				-3.2
1,674,419	-				-0.5
1,674,419	-				+2.1
1,674,420	+				+0.3
1,674,420	+				+0.6
1,674,420	+				+2.5
1,674,422	+				+4.0
1,674,431	+				-3.8
1,674,432	-				+1.4
1,674,433	+				-0.4
1,674,433	+				-1.9
1,674,435	-				-2.0
1,674,435	-				-2.2
1,674,435	-				+1.6
1,674,435	-				+3.0
1,674,435	-				-0.7
1,674,436	+				-1.3
1,674,436	+				-1.8
1,674,436	+				+0.8
1,674,440	-				-1.4
1,674,441	+				+0.9
1,674,441	+				-2.1
1,674,442	-				+1.1
1,674,442	-				+0.5
1,674,443	+				-1.1
1,674,443	+				+0.5
1,674,443	+				+1.6
1,674,443	+				+3.9
1,674,443	+				-0.5
1,674,446	-				-0.8
1,674,446	-				+0.9
1,674,446	-				+1.8
1,674,446	-				-1.6
1,674,446	-				+0.2
1,674,446	-				-0.1
1,674,446	-				+1.6
1,674,447	+				+1.5
1,674,447	+				+0.4
1,674,447	+				-3.2
1,674,487	-				-1.2
1,674,492	+				+3.4
1,674,492	+				-1.0
1,674,521	+				-2.5
1,674,537	-				-0.4
1,674,540	+				+2.0
1,674,547	+				-4.3
1,674,547	+				+0.6
1,674,592	-				-0.6
1,674,593	+				-0.2
1,674,605	-				+2.1
1,674,631	+		MMJJ_RS09060	0.15	-1.2
1,674,643	+		MMJJ_RS09060	0.20	-0.8
1,674,657	-		MMJJ_RS09060	0.26	-1.5
1,674,657	-		MMJJ_RS09060	0.26	-1.0
1,674,678	-		MMJJ_RS09060	0.36	+0.3
1,674,687	-		MMJJ_RS09060	0.39	-1.3
1,674,687	-		MMJJ_RS09060	0.39	-0.6
1,674,687	-		MMJJ_RS09060	0.39	+1.1
1,674,688	+		MMJJ_RS09060	0.40	-2.7
1,674,688	+		MMJJ_RS09060	0.40	+0.7
1,674,688	+		MMJJ_RS09060	0.40	+1.6
1,674,689	-		MMJJ_RS09060	0.40	+0.2
1,674,689	-		MMJJ_RS09060	0.40	+1.4
1,674,689	-		MMJJ_RS09060	0.40	+2.7
1,674,689	-		MMJJ_RS09060	0.40	-0.8
1,674,689	-		MMJJ_RS09060	0.40	+1.7
1,674,690	+		MMJJ_RS09060	0.41	-2.1
1,674,690	+		MMJJ_RS09060	0.41	-2.2
1,674,690	+		MMJJ_RS09060	0.41	-0.6
1,674,690	+		MMJJ_RS09060	0.41	-1.1
1,674,690	+		MMJJ_RS09060	0.41	-2.8
1,674,690	+		MMJJ_RS09060	0.41	+1.8
1,674,690	+		MMJJ_RS09060	0.41	+2.4
1,674,691	-		MMJJ_RS09060	0.41	+2.2
1,674,691	-		MMJJ_RS09060	0.41	+1.0
1,674,691	-		MMJJ_RS09060	0.41	-0.8
1,674,692	+		MMJJ_RS09060	0.42	+0.2
1,674,692	+		MMJJ_RS09060	0.42	+0.6
1,674,692	+		MMJJ_RS09060	0.42	-0.9
1,674,732	-		MMJJ_RS09060	0.59	+0.6
1,674,754	+		MMJJ_RS09060	0.69	-2.6
1,674,775	-		MMJJ_RS09060	0.78	+0.1
1,674,827	-				-1.4
1,674,828	+				+0.9
1,674,867	+				+1.8
1,674,877	+				+1.0
1,674,878	-				+1.4
1,674,917	-				-1.7
1,674,957	+				-1.0
1,674,983	-				-1.6
1,674,983	-				+0.1
1,674,983	-				+1.1
1,674,984	+				+0.9
1,674,985	-				+1.9
1,674,986	+				+1.0
1,674,997	-				-4.3
1,674,997	-				-1.5
1,675,001	-				+1.0
1,675,001	-				-2.9
1,675,001	-				-1.9
1,675,001	-				-0.4
1,675,001	-				-2.8
1,675,001	-				-0.0
1,675,002	+				+2.0
1,675,002	+				-0.6
1,675,002	+				+1.5
1,675,017	-				+1.2
1,675,017	-				+4.0
1,675,021	-				-1.5
1,675,021	-				-0.1
1,675,081	-				-0.8
1,675,098	+				+0.6
1,675,145	+		MMJJ_RS09065	0.16	+2.5
1,675,153	+		MMJJ_RS09065	0.18	-1.3
1,675,153	+		MMJJ_RS09065	0.18	+1.2
1,675,159	-		MMJJ_RS09065	0.19	+1.4
1,675,235	+		MMJJ_RS09065	0.33	-1.6
1,675,235	+		MMJJ_RS09065	0.33	-0.8
1,675,253	-		MMJJ_RS09065	0.36	-0.3
1,675,357	-		MMJJ_RS09065	0.55	-0.2
1,675,359	-		MMJJ_RS09065	0.55	+2.1
1,675,359	-		MMJJ_RS09065	0.55	-1.3
1,675,383	-		MMJJ_RS09065	0.59	+4.0
1,675,384	+		MMJJ_RS09065	0.60	+1.4
1,675,384	+		MMJJ_RS09065	0.60	-1.8
1,675,384	+		MMJJ_RS09065	0.60	+3.9
1,675,384	+		MMJJ_RS09065	0.60	+0.1
1,675,412	-		MMJJ_RS09065	0.65	-0.4
1,675,412	-		MMJJ_RS09065	0.65	+0.5
1,675,473	-		MMJJ_RS09065	0.76	-1.1
1,675,531	+		MMJJ_RS09065	0.86	-0.0
1,675,547	+		MMJJ_RS09065	0.89	-0.5
1,675,585	+				+2.4
1,675,619	-				+3.6
1,675,619	-				-2.6
1,675,620	+				+2.7
1,675,621	-				-1.0
1,675,622	+				+1.4
1,675,649	-				-1.1
1,675,652	+				-1.4
1,675,652	+				-2.0
1,675,652	+				-0.2
1,675,652	+				+0.6
1,675,653	-				-0.2
1,675,653	-				-2.0
1,675,653	-				-1.2
1,675,654	+				-0.0
1,675,654	+				+1.6
1,675,668	-				+1.0
1,675,668	-				-2.0
1,675,674	-				+1.7
1,675,674	-				+3.3
1,675,674	-				+0.1
1,675,674	-				-2.9
1,675,675	+				-0.2
1,675,675	+				-0.9
1,675,675	+				-2.0
1,675,687	-				-0.8
1,675,687	-				-0.5
1,675,687	-				+1.8
1,675,687	-				+3.5
1,675,688	+				-1.4
1,675,688	+				+3.1
1,675,688	+				-2.9
1,675,688	+				+1.5
1,675,694	-				+5.3
1,675,702	+				+1.7
1,675,703	-				+4.3
1,675,704	+				-0.6
1,675,704	+				-1.4
1,675,704	+				-0.3
1,675,704	+				+1.7
1,675,712	+				-1.0
1,675,712	+				-2.7
1,675,756	-				+1.5
1,675,756	-				+2.3
1,675,756	-				+2.3
1,675,756	-				-0.4
1,675,757	+				-0.3
1,675,764	+				+0.1
1,675,778	+				-1.9
1,675,778	+				-0.5
1,675,809	+				+3.0
1,675,820	-				-1.2
1,675,820	-				+0.2
1,675,820	-				+1.4
1,675,821	+				-1.9
1,675,821	+				-2.2
1,675,821	+				-3.2
1,675,821	+				-2.8
1,675,821	+				-3.6
1,675,821	+				+0.2
1,675,821	+				+5.6
1,675,821	+				+0.5
1,675,821	+				-0.7
1,675,821	+				-3.9
1,675,821	+				-0.0
1,675,821	+				+1.0