Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS09055

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,671,513	+		MMJJ_RS09045	0.69	+1.2
1,671,672	-				+2.4
1,671,673	+				-0.8
1,671,673	+				-0.9
1,671,681	+				-2.1
1,671,713	+				+1.9
1,671,717	-				-1.5
1,671,717	-				-0.1
1,671,717	-				-0.7
1,671,718	+				-0.8
1,671,718	+				+0.7
1,671,728	-				-2.7
1,671,755	+				-0.0
1,671,760	+				-1.1
1,671,767	+				+1.2
1,671,788	+				-1.1
1,671,788	+				-2.2
1,671,819	+				-2.4
1,671,867	-		MMJJ_RS09050	0.16	-2.1
1,671,945	-		MMJJ_RS09050	0.37	-1.9
1,671,991	+		MMJJ_RS09050	0.50	-1.6
1,672,052	-		MMJJ_RS09050	0.67	-2.9
1,672,053	+		MMJJ_RS09050	0.67	+3.0
1,672,138	-				-1.9
1,672,139	+				+0.9
1,672,162	+				-0.2
1,672,187	+				-2.4
1,672,197	-				+1.3
1,672,305	-				-2.5
1,672,388	+				-2.9
1,672,390	-				-2.5
1,672,437	-				-0.4
1,672,437	-				-2.2
1,672,437	-				+0.3
1,672,437	-				+2.9
1,672,441	-				+0.1
1,672,442	+				-2.1
1,672,547	-		MMJJ_RS09055	0.14	-1.6
1,672,548	+		MMJJ_RS09055	0.14	-1.7
1,672,684	-		MMJJ_RS09055	0.21	-0.4
1,672,707	-		MMJJ_RS09055	0.22	+1.9
1,672,707	-		MMJJ_RS09055	0.22	-1.9
1,672,717	+		MMJJ_RS09055	0.22	-1.4
1,672,750	-		MMJJ_RS09055	0.24	+0.1
1,672,750	-		MMJJ_RS09055	0.24	-1.9
1,672,750	-		MMJJ_RS09055	0.24	-1.8
1,672,750	-		MMJJ_RS09055	0.24	+0.2
1,672,751	+		MMJJ_RS09055	0.24	-1.8
1,672,769	-		MMJJ_RS09055	0.25	-2.2
1,672,820	+		MMJJ_RS09055	0.28	-3.3
1,672,942	-		MMJJ_RS09055	0.33	-0.1
1,672,973	+		MMJJ_RS09055	0.35	-3.2
1,673,029	-		MMJJ_RS09055	0.38	-0.8
1,673,030	+		MMJJ_RS09055	0.38	-1.0
1,673,030	+		MMJJ_RS09055	0.38	-1.5
1,673,031	-		MMJJ_RS09055	0.38	-0.9
1,673,031	-		MMJJ_RS09055	0.38	-1.4
1,673,246	+		MMJJ_RS09055	0.48	-0.8
1,673,257	-		MMJJ_RS09055	0.49	-3.1
1,673,258	+				+2.2
1,673,356	+		MMJJ_RS09055	0.54	-0.9
1,673,403	-		MMJJ_RS09055	0.56	-2.1
1,673,564	+		MMJJ_RS09055	0.64	+0.2
1,673,564	+		MMJJ_RS09055	0.64	+0.6
1,673,723	+		MMJJ_RS09055	0.72	+0.2
1,673,917	-		MMJJ_RS09055	0.81	+0.5
1,673,917	-		MMJJ_RS09055	0.81	-0.8
1,673,938	-		MMJJ_RS09055	0.82	-1.8
1,674,022	+		MMJJ_RS09055	0.86	-0.4
1,674,051	-		MMJJ_RS09055	0.88	-1.9
1,674,113	+				-0.4
1,674,117	+				-3.2
1,674,117	+				-1.0
1,674,173	+				+1.2
1,674,346	-				-1.2
1,674,346	-				-1.3
1,674,347	+				+1.2
1,674,347	+				-0.2
1,674,350	-				-1.4
1,674,350	-				+1.5
1,674,355	+				-1.8
1,674,355	+				-2.4
1,674,361	-				-2.1
1,674,361	-				-0.8
1,674,361	-				+0.4
1,674,361	-				-1.0
1,674,362	+				-1.6
1,674,362	+				-2.3
1,674,370	-				-0.1
1,674,370	-				+0.9
1,674,379	+				+1.3
1,674,381	-				-0.0
1,674,381	-				+1.4
1,674,389	-				+1.1
1,674,389	-				+4.1
1,674,389	-				+0.1
1,674,390	+				-1.5
1,674,390	+				+2.7
1,674,390	+				+3.9
1,674,401	-				-0.8
1,674,410	+				+2.1
1,674,417	-				-1.1
1,674,418	+				-3.2
1,674,419	-				-0.5
1,674,419	-				+2.1
1,674,420	+				+0.3
1,674,420	+				+0.6
1,674,420	+				+2.5
1,674,422	+				+4.0
1,674,431	+				-3.8
1,674,432	-				+1.4
1,674,433	+				-0.4
1,674,433	+				-1.9
1,674,435	-				-2.0
1,674,435	-				-2.2
1,674,435	-				+1.6
1,674,435	-				+3.0
1,674,435	-				-0.7
1,674,436	+				-1.3
1,674,436	+				-1.8
1,674,436	+				+0.8
1,674,440	-				-1.4
1,674,441	+				+0.9
1,674,441	+				-2.1
1,674,442	-				+1.1
1,674,442	-				+0.5
1,674,443	+				-1.1
1,674,443	+				+0.5
1,674,443	+				+1.6
1,674,443	+				+3.9
1,674,443	+				-0.5
1,674,446	-				-0.8
1,674,446	-				+0.9
1,674,446	-				+1.8
1,674,446	-				-1.6
1,674,446	-				+0.2
1,674,446	-				-0.1
1,674,446	-				+1.6
1,674,447	+				+1.5
1,674,447	+				+0.4
1,674,447	+				-3.2
1,674,487	-				-1.2
1,674,492	+				+3.4
1,674,492	+				-1.0
1,674,521	+				-2.5
1,674,537	-				-0.4
1,674,540	+				+2.0
1,674,547	+				-4.3
1,674,547	+				+0.6
1,674,592	-				-0.6
1,674,593	+				-0.2
1,674,605	-				+2.1
1,674,631	+		MMJJ_RS09060	0.15	-1.2
1,674,643	+		MMJJ_RS09060	0.20	-0.8
1,674,657	-		MMJJ_RS09060	0.26	-1.5
1,674,657	-		MMJJ_RS09060	0.26	-1.0
1,674,678	-		MMJJ_RS09060	0.36	+0.3
1,674,687	-		MMJJ_RS09060	0.39	-1.3
1,674,687	-		MMJJ_RS09060	0.39	-0.6
1,674,687	-		MMJJ_RS09060	0.39	+1.1
1,674,688	+		MMJJ_RS09060	0.40	-2.7
1,674,688	+		MMJJ_RS09060	0.40	+0.7
1,674,688	+		MMJJ_RS09060	0.40	+1.6
1,674,689	-		MMJJ_RS09060	0.40	+0.2
1,674,689	-		MMJJ_RS09060	0.40	+1.4
1,674,689	-		MMJJ_RS09060	0.40	+2.7
1,674,689	-		MMJJ_RS09060	0.40	-0.8
1,674,689	-		MMJJ_RS09060	0.40	+1.7
1,674,690	+		MMJJ_RS09060	0.41	-2.1
1,674,690	+		MMJJ_RS09060	0.41	-2.2
1,674,690	+		MMJJ_RS09060	0.41	-0.6
1,674,690	+		MMJJ_RS09060	0.41	-1.1
1,674,690	+		MMJJ_RS09060	0.41	-2.8
1,674,690	+		MMJJ_RS09060	0.41	+1.8
1,674,690	+		MMJJ_RS09060	0.41	+2.4
1,674,691	-		MMJJ_RS09060	0.41	+2.2
1,674,691	-		MMJJ_RS09060	0.41	+1.0
1,674,691	-		MMJJ_RS09060	0.41	-0.8
1,674,692	+		MMJJ_RS09060	0.42	+0.2
1,674,692	+		MMJJ_RS09060	0.42	+0.6
1,674,692	+		MMJJ_RS09060	0.42	-0.9
1,674,732	-		MMJJ_RS09060	0.59	+0.6
1,674,754	+		MMJJ_RS09060	0.69	-2.6
1,674,775	-		MMJJ_RS09060	0.78	+0.1
1,674,827	-				-1.4
1,674,828	+				+0.9
1,674,867	+				+1.8
1,674,877	+				+1.0
1,674,878	-				+1.4
1,674,917	-				-1.7
1,674,957	+				-1.0
1,674,983	-				-1.6
1,674,983	-				+0.1
1,674,983	-				+1.1
1,674,984	+				+0.9
1,674,985	-				+1.9
1,674,986	+				+1.0
1,674,997	-				-4.3
1,674,997	-				-1.5
1,675,001	-				+1.0
1,675,001	-				-2.9
1,675,001	-				-1.9
1,675,001	-				-0.4
1,675,001	-				-2.8
1,675,001	-				-0.0
1,675,002	+				+2.0
1,675,002	+				-0.6
1,675,002	+				+1.5
1,675,017	-				+1.2
1,675,017	-				+4.0
1,675,021	-				-1.5
1,675,021	-				-0.1
1,675,081	-				-0.8
1,675,098	+				+0.6
1,675,145	+		MMJJ_RS09065	0.16	+2.5
1,675,153	+		MMJJ_RS09065	0.18	-1.3
1,675,153	+		MMJJ_RS09065	0.18	+1.2
1,675,159	-		MMJJ_RS09065	0.19	+1.4
1,675,235	+		MMJJ_RS09065	0.33	-1.6
1,675,235	+		MMJJ_RS09065	0.33	-0.8
1,675,253	-		MMJJ_RS09065	0.36	-0.3