Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS09020

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,663,235	-		MMJJ_RS09010	0.86	+0.2
1,663,242	-		MMJJ_RS09010	0.87	-2.6
1,663,255	-				-2.8
1,663,255	-				+3.1
1,663,255	-				-0.6
1,663,255	-				-0.7
1,663,255	-				+2.2
1,663,255	-				-3.2
1,663,256	+				-1.6
1,663,256	+				+3.0
1,663,256	+				+0.3
1,663,259	-				+2.4
1,663,259	-				-0.3
1,663,271	+				-0.8
1,663,294	-				-1.7
1,663,294	-				+1.3
1,663,294	-				+0.1
1,663,302	-				-2.8
1,663,304	-				-0.4
1,663,329	+				-0.4
1,663,378	+				+0.2
1,663,464	-		MMJJ_RS09015	0.10	-1.9
1,663,683	+		MMJJ_RS09015	0.38	-3.6
1,663,767	-		MMJJ_RS09015	0.48	+3.5
1,663,819	+		MMJJ_RS09015	0.54	-1.2
1,663,830	-		MMJJ_RS09015	0.56	+0.2
1,663,860	-		MMJJ_RS09015	0.59	-2.1
1,663,862	-		MMJJ_RS09015	0.60	-0.1
1,663,863	+		MMJJ_RS09015	0.60	-0.4
1,663,906	+		MMJJ_RS09015	0.65	-3.1
1,663,925	+		MMJJ_RS09015	0.68	-0.1
1,663,964	-		MMJJ_RS09015	0.72	-1.8
1,663,993	+		MMJJ_RS09015	0.76	+0.0
1,663,998	+		MMJJ_RS09015	0.77	+3.6
1,664,004	-		MMJJ_RS09015	0.77	-0.3
1,664,004	-		MMJJ_RS09015	0.77	-2.4
1,664,004	-		MMJJ_RS09015	0.77	-3.3
1,664,004	-		MMJJ_RS09015	0.77	-1.8
1,664,004	-		MMJJ_RS09015	0.77	-0.2
1,664,004	-		MMJJ_RS09015	0.77	-1.8
1,664,005	+		MMJJ_RS09015	0.77	-0.4
1,664,005	+		MMJJ_RS09015	0.77	-1.8
1,664,005	+		MMJJ_RS09015	0.77	-0.8
1,664,010	-		MMJJ_RS09015	0.78	-1.8
1,664,010	-		MMJJ_RS09015	0.78	-0.4
1,664,010	-		MMJJ_RS09015	0.78	+1.1
1,664,016	-		MMJJ_RS09015	0.79	+3.7
1,664,016	-		MMJJ_RS09015	0.79	+0.9
1,664,016	-		MMJJ_RS09015	0.79	-2.0
1,664,022	-		MMJJ_RS09015	0.80	+0.2
1,664,023	+		MMJJ_RS09015	0.80	-2.5
1,664,040	-		MMJJ_RS09015	0.82	-1.9
1,664,040	-		MMJJ_RS09015	0.82	+1.2
1,664,049	+		MMJJ_RS09015	0.83	-1.1
1,664,091	-		MMJJ_RS09015	0.88	+0.2
1,664,093	-		MMJJ_RS09015	0.88	+1.7
1,664,093	-		MMJJ_RS09015	0.88	+1.6
1,664,094	+		MMJJ_RS09015	0.88	+1.7
1,664,133	-				+2.3
1,664,134	+				+3.3
1,664,136	-				+2.2
1,664,136	-				+0.5
1,664,136	-				+3.7
1,664,137	+				+1.1
1,664,139	-				+0.2
1,664,142	-				-1.4
1,664,143	+				+2.6
1,664,155	+				+0.2
1,664,156	-				-0.4
1,664,157	+				-0.8
1,664,171	-				+3.3
1,664,186	-				-2.2
1,664,186	-				+1.7
1,664,187	+				-0.4
1,664,187	+				-0.5
1,664,198	-				+2.0
1,664,211	-				-2.5
1,664,218	-				+1.2
1,664,219	+				+2.2
1,664,219	+				+2.3
1,664,219	+				-0.6
1,664,220	-				-1.4
1,664,221	+				+1.9
1,664,232	-				+1.0
1,664,232	-				-2.3
1,664,248	+				+3.7
1,664,254	+				-1.7
1,664,254	+				-2.6
1,664,265	+		MMJJ_RS09020	0.10	-2.2
1,664,268	-		MMJJ_RS09020	0.11	+1.1
1,664,269	+		MMJJ_RS09020	0.11	+0.2
1,664,334	-		MMJJ_RS09020	0.27	+0.3
1,664,338	+		MMJJ_RS09020	0.28	+2.5
1,664,458	-		MMJJ_RS09020	0.57	+3.7
1,664,459	+		MMJJ_RS09020	0.57	+1.2
1,664,459	+		MMJJ_RS09020	0.57	+2.9
1,664,459	+		MMJJ_RS09020	0.57	-0.0
1,664,470	+		MMJJ_RS09020	0.60	+2.1
1,664,482	+		MMJJ_RS09020	0.63	-3.4
1,664,530	-		MMJJ_RS09020	0.74	+1.4
1,664,564	-		MMJJ_RS09020	0.82	+1.5
1,664,610	-				-0.2
1,664,612	-				+1.1
1,664,613	+				-1.7
1,664,619	-				-0.1
1,664,620	+				-3.2
1,664,621	-				+0.7
1,664,622	+				-0.5
1,664,622	+				-0.6
1,664,623	-				+0.6
1,664,623	-				-0.9
1,664,628	-				-1.7
1,664,628	-				-0.8
1,664,628	-				-0.1
1,664,629	+				-1.8
1,664,629	+				+0.9
1,664,629	+				-3.6
1,664,664	+				+1.2
1,664,664	+				-1.1
1,664,664	+				-1.6
1,664,664	+				-1.6
1,664,665	-				-1.4
1,664,665	-				+3.5
1,664,666	+				-3.5
1,664,667	-				+1.5
1,664,667	-				-0.8
1,664,668	+				-3.5
1,664,668	+				-2.2
1,664,668	+				-1.9
1,664,668	+				+2.4
1,664,675	-				+4.3
1,664,675	-				-2.8
1,664,675	-				-0.8
1,664,676	+				-1.9
1,664,679	-				-1.7
1,664,680	+				+1.0
1,664,691	-				-1.8
1,664,700	-				-1.6
1,664,701	+				-3.0
1,664,702	-				+2.9
1,664,703	+				+0.1
1,664,703	+				-2.5
1,664,704	-				+0.5
1,664,704	-				-1.9
1,664,705	+				-1.4
1,664,709	-				-1.4
1,664,714	-				-1.4
1,664,717	+				-0.3
1,664,719	-				-0.8
1,665,157	-				+1.2
1,665,327	+				+0.2
1,665,355	+				-0.4
1,665,389	-				-2.7
1,665,390	+				-0.8
1,665,433	-				+0.2
1,665,481	-				-0.4
1,665,481	-				+0.5
1,665,481	-				-2.2
1,665,481	-				-0.8
1,665,481	-				-1.3
1,665,481	-				+1.8
1,665,481	-				-2.4
1,665,481	-				-0.6
1,665,482	+				+1.2
1,665,494	-				-2.5
1,665,497	-				+1.2
1,665,501	+				+3.0
1,665,521	-				+0.2
1,665,587	-				+1.2
1,665,623	-		MMJJ_RS09030	0.10	-0.4