Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08985

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMJJ_RS08975 and MMJJ_RS08980 are separated by 10 nucleotidesMMJJ_RS08980 and MMJJ_RS08985 are separated by 60 nucleotidesMMJJ_RS08985 and MMJJ_RS08990 are separated by 52 nucleotides MMJJ_RS08975: MMJJ_RS08975 - V-type ATP synthase subunit C, at 1,654,260 to 1,655,435 _RS08975 MMJJ_RS08980: MMJJ_RS08980 - V-type ATP synthase subunit E family protein, at 1,655,446 to 1,656,057 _RS08980 MMJJ_RS08985: MMJJ_RS08985 - ATP synthase subunit K, at 1,656,118 to 1,656,786 _RS08985 MMJJ_RS08990: MMJJ_RS08990 - V-type ATP synthase subunit I, at 1,656,839 to 1,658,899 _RS08990 Position (kb) 1656 1657Strain fitness (log2 ratio) -1 0 1at 1657.480 kb on + strand, within MMJJ_RS08990at 1657.524 kb on - strand, within MMJJ_RS08990

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
remove
1,657,480 + MMJJ_RS08990 0.31 -0.4
1,657,524 - MMJJ_RS08990 0.33 -0.4

Or see this region's nucleotide sequence